HEADER TRANSCRIPTION 03-OCT-19 6UJH TITLE DISCOVERY OF FRAGMENT-INSPIRED HETEROCYCLIC BENZENESULFONAMIDES AS TITLE 2 INHIBITORS OF THE WDR5-MYC INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS WDR5, MYC, STRUCTURE-BASED DESIGN, FRAGMENT SCREENING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,S.W.FESIK REVDAT 3 11-OCT-23 6UJH 1 REMARK REVDAT 2 06-MAY-20 6UJH 1 JRNL REVDAT 1 15-APR-20 6UJH 0 JRNL AUTH S.CHACON SIMON,F.WANG,L.R.THOMAS,J.PHAN,B.ZHAO, JRNL AUTH 2 E.T.OLEJNICZAK,J.D.MACDONALD,J.G.SHAW,C.SCHLUND,W.PAYNE, JRNL AUTH 3 J.CREIGHTON,S.R.STAUFFER,A.G.WATERSON,W.P.TANSEY,S.W.FESIK JRNL TITL DISCOVERY OF WD REPEAT-CONTAINING PROTEIN 5 (WDR5)-MYC JRNL TITL 2 INHIBITORS USING FRAGMENT-BASED METHODS AND STRUCTURE-BASED JRNL TITL 3 DESIGN. JRNL REF J.MED.CHEM. V. 63 4315 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32223236 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00224 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 87682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.250 REMARK 3 FREE R VALUE TEST SET COUNT : 8987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.5852 - 4.6325 0.96 2684 300 0.1420 0.1614 REMARK 3 2 4.6325 - 3.6798 0.98 2766 313 0.1230 0.1386 REMARK 3 3 3.6798 - 3.2155 0.98 2719 299 0.1235 0.1360 REMARK 3 4 3.2155 - 2.9218 0.98 2799 252 0.1439 0.1562 REMARK 3 5 2.9218 - 2.7126 0.98 2715 317 0.1458 0.1572 REMARK 3 6 2.7126 - 2.5528 0.98 2696 342 0.1519 0.1558 REMARK 3 7 2.5528 - 2.4250 0.97 2720 293 0.1546 0.1725 REMARK 3 8 2.4250 - 2.3195 0.97 2662 332 0.1500 0.1764 REMARK 3 9 2.3195 - 2.2303 0.97 2665 361 0.1458 0.1741 REMARK 3 10 2.2303 - 2.1533 0.97 2657 332 0.1443 0.1860 REMARK 3 11 2.1533 - 2.0860 0.96 2686 304 0.1407 0.1727 REMARK 3 12 2.0860 - 2.0264 0.95 2639 317 0.1425 0.1604 REMARK 3 13 2.0264 - 1.9731 0.97 2701 271 0.1447 0.1605 REMARK 3 14 1.9731 - 1.9250 0.95 2639 334 0.1389 0.1703 REMARK 3 15 1.9250 - 1.8812 0.96 2655 283 0.1400 0.1781 REMARK 3 16 1.8812 - 1.8412 0.94 2687 286 0.1492 0.1726 REMARK 3 17 1.8412 - 1.8044 0.94 2585 306 0.1437 0.1760 REMARK 3 18 1.8044 - 1.7703 0.94 2617 312 0.1564 0.1798 REMARK 3 19 1.7703 - 1.7387 0.94 2623 296 0.1576 0.1998 REMARK 3 20 1.7387 - 1.7092 0.94 2570 341 0.1633 0.1977 REMARK 3 21 1.7092 - 1.6817 0.94 2575 344 0.1541 0.1825 REMARK 3 22 1.6817 - 1.6558 0.92 2563 297 0.1553 0.1887 REMARK 3 23 1.6558 - 1.6315 0.94 2569 303 0.1617 0.2093 REMARK 3 24 1.6315 - 1.6085 0.91 2608 254 0.1610 0.1838 REMARK 3 25 1.6085 - 1.5867 0.93 2619 277 0.1645 0.2041 REMARK 3 26 1.5867 - 1.5661 0.92 2560 269 0.1729 0.1971 REMARK 3 27 1.5661 - 1.5466 0.91 2566 273 0.1787 0.2173 REMARK 3 28 1.5466 - 1.5279 0.92 2536 276 0.2015 0.2134 REMARK 3 29 1.5279 - 1.5102 0.89 2547 274 0.2027 0.2397 REMARK 3 30 1.5102 - 1.4932 0.75 2067 229 0.2228 0.2475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5288 REMARK 3 ANGLE : 1.222 7225 REMARK 3 CHIRALITY : 0.090 802 REMARK 3 PLANARITY : 0.009 912 REMARK 3 DIHEDRAL : 12.159 1893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2085 1.4967 -2.6818 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0822 REMARK 3 T33: 0.0954 T12: -0.0081 REMARK 3 T13: -0.0075 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.5054 L22: 0.6658 REMARK 3 L33: 1.3056 L12: -0.3233 REMARK 3 L13: -0.2045 L23: 0.3577 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.0754 S13: 0.0358 REMARK 3 S21: -0.0060 S22: 0.0537 S23: -0.0618 REMARK 3 S31: -0.2404 S32: 0.0891 S33: -0.0596 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0652 -16.9825 -11.4966 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0580 REMARK 3 T33: 0.0867 T12: 0.0187 REMARK 3 T13: -0.0161 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.9472 L22: 1.3299 REMARK 3 L33: 1.2096 L12: -0.1079 REMARK 3 L13: -0.1530 L23: 0.2615 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: -0.0056 S13: -0.0821 REMARK 3 S21: 0.1386 S22: 0.0764 S23: -0.0907 REMARK 3 S31: 0.1157 S32: 0.0613 S33: -0.0288 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5738 -19.4297 -4.9899 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.1235 REMARK 3 T33: 0.1721 T12: -0.0286 REMARK 3 T13: 0.0047 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.5311 L22: 0.8688 REMARK 3 L33: 1.8279 L12: -0.0633 REMARK 3 L13: -0.0481 L23: -0.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: 0.0306 S13: -0.2587 REMARK 3 S21: 0.0257 S22: -0.0841 S23: 0.1440 REMARK 3 S31: 0.3729 S32: -0.2411 S33: 0.0752 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1447 -1.9919 -2.0658 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.1697 REMARK 3 T33: 0.1225 T12: 0.0293 REMARK 3 T13: -0.0153 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.8324 L22: 1.2139 REMARK 3 L33: 1.1615 L12: 0.1136 REMARK 3 L13: -0.1846 L23: 0.6988 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.0177 S13: -0.0289 REMARK 3 S21: -0.1204 S22: -0.1438 S23: 0.1636 REMARK 3 S31: -0.1324 S32: -0.2582 S33: 0.0893 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3819 -20.3912 19.7307 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.0972 REMARK 3 T33: 0.0973 T12: -0.0092 REMARK 3 T13: 0.0136 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.3710 L22: 0.7170 REMARK 3 L33: 0.7897 L12: 0.2670 REMARK 3 L13: -0.0236 L23: -0.1366 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: 0.1171 S13: 0.0228 REMARK 3 S21: -0.0511 S22: 0.0599 S23: -0.0147 REMARK 3 S31: -0.1306 S32: -0.0666 S33: -0.0679 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4565 -38.0508 31.8729 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: 0.0634 REMARK 3 T33: 0.0916 T12: -0.0222 REMARK 3 T13: 0.0066 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9127 L22: 0.9092 REMARK 3 L33: 0.9808 L12: -0.3520 REMARK 3 L13: 0.0772 L23: -0.2245 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0008 S13: -0.0755 REMARK 3 S21: 0.0264 S22: 0.0176 S23: 0.0606 REMARK 3 S31: 0.1136 S32: -0.0588 S33: -0.0302 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 210 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9944 -25.7043 23.8266 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.0966 REMARK 3 T33: 0.1003 T12: -0.0232 REMARK 3 T13: 0.0102 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.8255 L22: 1.1782 REMARK 3 L33: 1.1003 L12: -0.0917 REMARK 3 L13: 0.0129 L23: -0.3037 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: 0.0144 S13: -0.0124 REMARK 3 S21: 0.0299 S22: -0.0191 S23: -0.1264 REMARK 3 S31: -0.0166 S32: 0.1056 S33: 0.0104 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.493 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Y7R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 0.2 M AMMONIUM ACETATE, REMARK 280 32% PEG3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 785 O HOH B 836 1.80 REMARK 500 NZ LYS B 256 O HOH B 501 1.80 REMARK 500 O HOH A 835 O HOH A 840 1.84 REMARK 500 O HOH A 778 O HOH A 795 1.85 REMARK 500 O HOH A 648 O HOH A 803 1.89 REMARK 500 O HOH A 616 O HOH A 655 1.91 REMARK 500 O HOH A 818 O HOH A 860 1.93 REMARK 500 O HOH B 641 O HOH B 645 1.95 REMARK 500 O HOH A 795 O HOH A 820 1.96 REMARK 500 O HOH B 689 O HOH B 810 1.96 REMARK 500 O HOH A 782 O HOH A 817 1.97 REMARK 500 O HOH B 967 O HOH B 971 1.99 REMARK 500 O HOH A 809 O HOH A 865 2.00 REMARK 500 O HOH A 552 O HOH A 781 2.00 REMARK 500 O HOH A 763 O HOH A 909 2.00 REMARK 500 O HOH B 706 O HOH B 864 2.07 REMARK 500 O HOH A 825 O HOH A 878 2.08 REMARK 500 O HOH A 533 O HOH A 814 2.09 REMARK 500 O HOH A 582 O HOH A 846 2.09 REMARK 500 NH1 ARG B 181 O HOH B 502 2.09 REMARK 500 O HOH A 528 O HOH A 879 2.09 REMARK 500 O HOH B 568 O HOH B 812 2.11 REMARK 500 O HOH A 741 O HOH A 798 2.11 REMARK 500 O HOH A 779 O HOH A 800 2.11 REMARK 500 O HOH A 770 O HOH B 889 2.11 REMARK 500 O HOH A 750 O HOH A 916 2.12 REMARK 500 O HOH A 655 O HOH A 687 2.19 REMARK 500 O HOH A 681 O HOH A 832 2.19 REMARK 500 O HOH A 749 O HOH A 758 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 754 O HOH B 865 1554 2.06 REMARK 500 O HOH A 940 O HOH B 934 1565 2.15 REMARK 500 O HOH B 575 O HOH B 732 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 151 7.08 80.27 REMARK 500 ASP A 192 -8.61 -54.48 REMARK 500 ASP A 192 -8.61 -51.05 REMARK 500 LEU A 234 40.51 -78.60 REMARK 500 ASN A 257 89.07 -151.31 REMARK 500 LYS A 259 -48.16 -131.70 REMARK 500 LEU B 234 41.60 -80.11 REMARK 500 LEU B 321 -167.92 -77.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 190 -12.79 REMARK 500 SER A 190 -10.24 REMARK 500 LYS B 27 10.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QBS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QBS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 405 DBREF 6UJH A 22 334 UNP P61964 WDR5_HUMAN 22 334 DBREF 6UJH B 22 334 UNP P61964 WDR5_HUMAN 22 334 SEQRES 1 A 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 A 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 A 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 A 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 A 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 A 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 A 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 A 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 A 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 A 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 A 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 A 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 A 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 A 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 A 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 A 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 A 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 A 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 A 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 A 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 A 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 A 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 A 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 A 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 A 313 CYS SEQRES 1 B 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 B 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 B 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 B 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 B 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 B 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 B 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 B 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 B 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 B 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 B 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 B 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 B 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 B 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 B 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 B 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 B 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 B 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 B 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 B 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 B 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 B 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 B 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 B 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 B 313 CYS HET QBS A 401 13 HET SO4 A 402 5 HET SO4 A 403 5 HET QBS B 401 13 HET SO4 B 402 5 HET DMS B 403 4 HET DMS B 404 4 HET DMS B 405 4 HETNAM QBS (2R)-2-(4-CHLOROPHENYL)-3-OXOBUTANENITRILE HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 QBS 2(C10 H8 CL N O) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 DMS 3(C2 H6 O S) FORMUL 11 HOH *919(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N SER A 306 O ALA A 319 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 LYS A 120 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LEU A 249 N LEU A 240 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O VAL A 275 N ASN A 265 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O LEU A 297 N VAL A 283 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O ALA B 61 N LYS B 52 SHEET 3 AA9 4 ILE B 69 GLY B 73 -1 O LYS B 70 N SER B 62 SHEET 4 AA9 4 PHE B 79 ILE B 83 -1 O ILE B 83 N ILE B 69 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O ALA B 105 N SER B 91 SHEET 3 AB1 4 LEU B 111 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 AB1 4 LYS B 120 LEU B 125 -1 O LEU B 125 N LEU B 111 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 209 N CYS B 195 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 TYR B 228 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O LYS B 247 N ASP B 242 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O VAL B 275 N ASN B 265 SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O VAL B 294 N ILE B 285 SITE 1 AC1 9 PRO A 224 ASN A 225 VAL A 268 LYS A 272 SITE 2 AC1 9 HOH A 530 HOH A 701 TYR B 75 ASP B 76 SITE 3 AC1 9 LYS B 331 SITE 1 AC2 9 LYS A 123 THR A 124 LYS A 256 HOH A 519 SITE 2 AC2 9 HOH A 529 HOH A 544 HOH A 630 HOH A 664 SITE 3 AC2 9 HOH A 706 SITE 1 AC3 11 LYS A 221 ASN A 265 ALA A 308 CYS A 309 SITE 2 AC3 11 HOH A 514 HOH A 567 HOH A 579 HOH A 648 SITE 3 AC3 11 HOH A 689 HOH A 696 HOH A 724 SITE 1 AC4 10 TYR A 75 ASP A 76 LYS A 331 PRO B 224 SITE 2 AC4 10 ASN B 225 TYR B 228 VAL B 268 LYS B 272 SITE 3 AC4 10 HOH B 626 HOH B 698 SITE 1 AC5 11 LYS B 221 ASN B 265 ALA B 308 CYS B 309 SITE 2 AC5 11 HOH B 505 HOH B 538 HOH B 558 HOH B 621 SITE 3 AC5 11 HOH B 641 HOH B 681 HOH B 682 SITE 1 AC6 6 CYS B 248 LEU B 249 LYS B 250 THR B 251 SITE 2 AC6 6 HOH B 552 HOH B 622 SITE 1 AC7 4 TRP B 95 SER B 97 PHE B 137 ASN B 138 SITE 1 AC8 2 TYR B 228 GLN B 289 CRYST1 47.135 47.274 68.542 89.98 90.50 104.35 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021216 0.005427 0.000194 0.00000 SCALE2 0.000000 0.021834 0.000039 0.00000 SCALE3 0.000000 0.000000 0.014590 0.00000