HEADER HYDROLASE/DNA 04-OCT-19 6UKE TITLE HHAI ENDONUCLEASE IN COMPLEX WITH IODINE-LABELLED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HHAI RESTRICTION ENDONUCLEASE; COMPND 3 CHAIN: X; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*TP*CP*CP*AP*AP*GP*CP*GP*CP*AP*AP*CP*G)-3'); COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*CP*GP*(5IT)P*TP*GP*CP*GP*CP*TP*(5IT)P*GP*GP*A)- COMPND 12 3'); COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 735; SOURCE 4 GENE: HMPREF1050_0931; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 10 ORGANISM_TAXID: 735; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 14 ORGANISM_TAXID: 735 KEYWDS RESTRICTION, MODIFICATION, PROTEIN-DNA COMPLEX, IODINE PHASING, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 13-MAR-24 6UKE 1 REMARK REVDAT 3 04-MAR-20 6UKE 1 JRNL REVDAT 2 08-JAN-20 6UKE 1 JRNL REVDAT 1 18-DEC-19 6UKE 0 JRNL AUTH J.R.HORTON,J.YANG,X.ZHANG,T.PETRONZIO,A.FOMENKOV,G.G.WILSON, JRNL AUTH 2 R.J.ROBERTS,X.CHENG JRNL TITL STRUCTURE OF HHAI ENDONUCLEASE WITH COGNATE DNA AT AN ATOMIC JRNL TITL 2 RESOLUTION OF 1.0 ANGSTROM. JRNL REF NUCLEIC ACIDS RES. V. 48 1466 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 31879785 JRNL DOI 10.1093/NAR/GKZ1195 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 69465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6500 - 4.7300 1.00 2756 139 0.1858 0.2306 REMARK 3 2 4.7300 - 3.7600 1.00 2703 141 0.1451 0.1594 REMARK 3 3 3.7600 - 3.2800 1.00 2789 143 0.1447 0.1640 REMARK 3 4 3.2800 - 2.9800 1.00 2730 144 0.1515 0.1875 REMARK 3 5 2.9800 - 2.7700 1.00 2743 143 0.1599 0.2270 REMARK 3 6 2.7700 - 2.6100 1.00 2734 147 0.1596 0.1784 REMARK 3 7 2.6100 - 2.4800 1.00 2747 142 0.1645 0.1987 REMARK 3 8 2.4800 - 2.3700 1.00 2727 143 0.1635 0.2094 REMARK 3 9 2.3700 - 2.2800 1.00 2782 146 0.1628 0.1697 REMARK 3 10 2.2800 - 2.2000 1.00 2700 140 0.1557 0.2137 REMARK 3 11 2.2000 - 2.1300 1.00 2786 145 0.1568 0.2301 REMARK 3 12 2.1300 - 2.0700 1.00 2716 138 0.1681 0.1979 REMARK 3 13 2.0700 - 2.0100 1.00 2756 149 0.1753 0.2438 REMARK 3 14 2.0100 - 1.9700 1.00 2673 141 0.1659 0.1767 REMARK 3 15 1.9700 - 1.9200 1.00 2788 144 0.1675 0.1939 REMARK 3 16 1.9200 - 1.8800 1.00 2733 144 0.1773 0.1998 REMARK 3 17 1.8800 - 1.8400 1.00 2723 143 0.1814 0.2111 REMARK 3 18 1.8400 - 1.8100 1.00 2733 142 0.1982 0.2277 REMARK 3 19 1.8100 - 1.7800 1.00 2704 143 0.1935 0.2269 REMARK 3 20 1.7800 - 1.7500 0.99 2754 145 0.2074 0.2455 REMARK 3 21 1.7500 - 1.7200 0.96 2673 138 0.2173 0.2573 REMARK 3 22 1.7200 - 1.6900 0.96 2575 138 0.2432 0.2507 REMARK 3 23 1.6900 - 1.6700 0.89 2473 131 0.2553 0.2938 REMARK 3 24 1.6700 - 1.6400 0.75 2074 102 0.2848 0.3069 REMARK 3 25 1.6400 - 1.6200 0.54 1442 80 0.3110 0.3010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.702 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2824 REMARK 3 ANGLE : 0.957 3891 REMARK 3 CHIRALITY : 0.055 413 REMARK 3 PLANARITY : 0.006 405 REMARK 3 DIHEDRAL : 20.870 1059 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1217 1.6738 62.9515 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.1053 REMARK 3 T33: 0.0714 T12: 0.0147 REMARK 3 T13: -0.0147 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 7.9296 L22: 8.7794 REMARK 3 L33: 1.9658 L12: 7.5248 REMARK 3 L13: -3.5718 L23: -3.6808 REMARK 3 S TENSOR REMARK 3 S11: 0.1227 S12: -0.3088 S13: -0.0907 REMARK 3 S21: 0.1363 S22: -0.2588 S23: -0.2469 REMARK 3 S31: -0.0366 S32: 0.2100 S33: 0.1345 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 19 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3277 -4.1487 52.0482 REMARK 3 T TENSOR REMARK 3 T11: 0.1469 T22: 0.1147 REMARK 3 T33: 0.1514 T12: -0.0032 REMARK 3 T13: 0.0375 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 5.3168 L22: 2.9220 REMARK 3 L33: 4.0660 L12: -0.5065 REMARK 3 L13: -0.1846 L23: 0.6956 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.3450 S13: 0.1936 REMARK 3 S21: -0.3138 S22: -0.0146 S23: -0.4488 REMARK 3 S31: -0.1779 S32: 0.4980 S33: 0.0403 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 43 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8157 19.3941 39.3268 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0971 REMARK 3 T33: 0.0547 T12: 0.0009 REMARK 3 T13: 0.0020 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.0691 L22: 2.0790 REMARK 3 L33: 2.3212 L12: 0.2125 REMARK 3 L13: -0.6148 L23: -1.7861 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.2287 S13: -0.0022 REMARK 3 S21: -0.1171 S22: -0.0144 S23: 0.0061 REMARK 3 S31: 0.0206 S32: -0.0566 S33: 0.0108 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 97 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6185 15.2061 49.6058 REMARK 3 T TENSOR REMARK 3 T11: 0.0671 T22: 0.0406 REMARK 3 T33: 0.0366 T12: 0.0014 REMARK 3 T13: -0.0004 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.3095 L22: 0.7874 REMARK 3 L33: 0.6772 L12: 0.1098 REMARK 3 L13: -0.1249 L23: -0.3116 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0429 S13: 0.0256 REMARK 3 S21: 0.1036 S22: 0.0076 S23: -0.0051 REMARK 3 S31: -0.0193 S32: 0.0232 S33: -0.0301 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 166 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9348 4.9986 48.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.2133 REMARK 3 T33: 0.1722 T12: 0.0461 REMARK 3 T13: -0.0248 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 1.7597 L22: 3.2835 REMARK 3 L33: 6.1351 L12: 1.2233 REMARK 3 L13: 0.3019 L23: 0.3887 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.1011 S13: -0.2080 REMARK 3 S21: -0.1254 S22: 0.0867 S23: -0.1205 REMARK 3 S31: 0.1952 S32: 0.2267 S33: -0.0529 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 199 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7666 10.1243 46.4734 REMARK 3 T TENSOR REMARK 3 T11: 0.0808 T22: 0.1596 REMARK 3 T33: 0.1683 T12: -0.0096 REMARK 3 T13: -0.0030 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 7.3043 L22: 3.7813 REMARK 3 L33: 1.6239 L12: -3.6900 REMARK 3 L13: 2.6252 L23: -0.1678 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: 0.1511 S13: -0.0829 REMARK 3 S21: 0.0707 S22: -0.1013 S23: -0.2080 REMARK 3 S31: 0.0862 S32: 0.3410 S33: -0.0597 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 228 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8846 10.5000 58.7113 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.0508 REMARK 3 T33: 0.0395 T12: 0.0168 REMARK 3 T13: -0.0079 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.1838 L22: 1.1771 REMARK 3 L33: 1.4619 L12: 0.9019 REMARK 3 L13: -1.4258 L23: -0.4030 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: -0.0969 S13: 0.1416 REMARK 3 S21: 0.1831 S22: -0.0478 S23: 0.1428 REMARK 3 S31: -0.0998 S32: -0.0226 S33: -0.0637 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5180 10.7288 45.3462 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.1384 REMARK 3 T33: 0.1843 T12: 0.0251 REMARK 3 T13: -0.0020 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.4035 L22: 2.6443 REMARK 3 L33: 2.3722 L12: -0.2097 REMARK 3 L13: -0.4289 L23: -0.9414 REMARK 3 S TENSOR REMARK 3 S11: 0.1424 S12: 0.0561 S13: -0.1928 REMARK 3 S21: -0.0185 S22: -0.0943 S23: -0.3577 REMARK 3 S31: 0.2300 S32: 0.4818 S33: -0.1080 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7031 11.5978 44.6136 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.2285 REMARK 3 T33: 0.1708 T12: 0.0343 REMARK 3 T13: -0.0861 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.7482 L22: 4.0747 REMARK 3 L33: 5.1154 L12: 1.0573 REMARK 3 L13: -0.1306 L23: -0.3144 REMARK 3 S TENSOR REMARK 3 S11: 0.2286 S12: 0.3944 S13: -0.3039 REMARK 3 S21: -0.5563 S22: -0.3008 S23: 0.0964 REMARK 3 S31: 0.2090 S32: -0.3920 S33: 0.0477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UKE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 28.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 17.80 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% V/V 2-PROPANOL, 0.1 M SODIUM REMARK 280 PHOSPHATE DIBASIC / CITRIC ACID, PH 4.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.59650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 4 NZ REMARK 470 LYS X 16 CD CE NZ REMARK 470 SER X 30 OG REMARK 470 THR X 31 OG1 CG2 REMARK 470 LYS X 67 CE NZ REMARK 470 GLU X 95 CD OE1 OE2 REMARK 470 LYS X 124 CE NZ REMARK 470 LYS X 178 CD CE NZ REMARK 470 LYS X 179 CG CD CE NZ REMARK 470 ARG X 186 CG CD NE CZ NH1 NH2 REMARK 470 GLU X 189 CG CD OE1 OE2 REMARK 470 ASP X 204 CG OD1 OD2 REMARK 470 GLU X 212 CD OE1 OE2 REMARK 470 ASN X 213 CG OD1 ND2 REMARK 470 ASN X 214 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 34 -100.76 -88.35 REMARK 500 CYS X 54 51.37 -158.88 REMARK 500 PRO X 107 47.47 -89.43 REMARK 500 ASN X 214 -111.33 55.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER X 151 OG REMARK 620 2 THR X 153 OG1 145.2 REMARK 620 3 EDO X 615 O2 145.6 58.0 REMARK 620 4 HOH X 732 O 106.9 86.1 98.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA X 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT X 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 X 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 DBREF 6UKE X 1 258 UNP I3DBY6 I3DBY6_HAEPH 1 258 DBREF 6UKE A 1 13 PDB 6UKE 6UKE 1 13 DBREF 6UKE B 1 13 PDB 6UKE 6UKE 1 13 SEQRES 1 X 258 MET ASN TRP LYS GLU PHE GLU VAL PHE CYS VAL THR TYR SEQRES 2 X 258 LEU ASN LYS THR TYR GLY ASN LYS PHE ALA LYS LYS GLY SEQRES 3 X 258 GLU SER ASP SER THR THR SER ASP ILE LEU PHE THR GLY SEQRES 4 X 258 ASN ASN PRO PHE TYR ILE GLU ALA LYS MET PRO HIS SER SEQRES 5 X 258 GLN CYS GLY GLN PHE VAL LEU ILE PRO ASN ARG ALA GLU SEQRES 6 X 258 TYR LYS PHE ASP TYR SER PRO LYS ASN LYS SER GLU ILE SEQRES 7 X 258 ASN PRO TYR THR GLN LYS ILE MET GLN PHE MET SER GLU SEQRES 8 X 258 ASN PHE SER GLU TYR ALA ASN LEU SER THR LYS GLY LYS SEQRES 9 X 258 ILE ILE PRO LEU PRO GLU SER VAL PHE VAL ASN TRP ILE SEQRES 10 X 258 LYS GLU TYR TYR LYS SER LYS SER VAL LYS PHE PHE ILE SEQRES 11 X 258 THR SER ASN GLY ASP PHE ILE ILE PHE PRO ILE GLU HIS SEQRES 12 X 258 PHE GLU HIS TYR PHE ASN VAL SER CYS THR TYR ARG ILE SEQRES 13 X 258 LYS LYS SER GLY SER ARG HIS LEU ASN SER LYS SER LEU SEQRES 14 X 258 PRO ASP PHE LYS GLN ALA LEU ASP LYS LYS GLY ILE SER SEQRES 15 X 258 TYR THR MET ARG GLY LEU GLU LEU HIS SER ASP GLU ASN SEQRES 16 X 258 ILE HIS ASP LYS ARG ILE SER GLY ASP ASP LYS ASP PHE SEQRES 17 X 258 LEU ILE LYS GLU ASN ASN GLY ALA TYR HIS VAL LYS ILE SEQRES 18 X 258 LEU SER ASN THR PHE ASN ALA ASN VAL ILE PHE SER ILE SEQRES 19 X 258 SER LEU LYS ASN ASN ILE SER LEU PHE ILE LEU ASN GLU SEQRES 20 X 258 ASP ARG LYS ALA PHE GLU ALA ALA ILE SER LEU SEQRES 1 A 13 DT DC DC DA DA DG DC DG DC DA DA DC DG SEQRES 1 B 13 DC DG 5IU DT DG DC DG DC DT 5IU DG DG DA HET 5IU B 3 20 HET 5IU B 10 20 HET CA X 601 1 HET EDO X 602 4 HET EDO X 603 4 HET EDO X 604 4 HET EDO X 605 4 HET EDO X 606 8 HET EDO X 607 4 HET EDO X 608 4 HET EDO X 609 4 HET EDO X 610 4 HET EDO X 611 4 HET EDO X 612 4 HET EDO X 613 4 HET EDO X 614 4 HET EDO X 615 4 HET EDO X 616 4 HET ACT X 617 4 HET PO4 X 618 5 HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HET ACT A 704 4 HET EDO B 101 4 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 5IU 2(C9 H12 I N2 O8 P) FORMUL 4 CA CA 2+ FORMUL 5 EDO 19(C2 H6 O2) FORMUL 20 ACT 2(C2 H3 O2 1-) FORMUL 21 PO4 O4 P 3- FORMUL 27 HOH *203(H2 O) HELIX 1 AA1 ASN X 2 GLY X 19 1 18 HELIX 2 AA2 ASN X 79 ASN X 92 1 14 HELIX 3 AA3 ASN X 92 ALA X 97 1 6 HELIX 4 AA4 PRO X 109 LYS X 124 1 16 HELIX 5 AA5 GLU X 142 HIS X 146 5 5 HELIX 6 AA6 SER X 168 GLY X 180 1 13 HELIX 7 AA7 SER X 241 ILE X 256 1 16 SHEET 1 AA1 5 PHE X 22 ALA X 23 0 SHEET 2 AA1 5 ILE X 35 PHE X 37 -1 O LEU X 36 N ALA X 23 SHEET 3 AA1 5 PHE X 43 ALA X 47 -1 O ILE X 45 N ILE X 35 SHEET 4 AA1 5 VAL X 126 SER X 132 1 O PHE X 128 N GLU X 46 SHEET 5 AA1 5 PHE X 136 PRO X 140 -1 O ILE X 137 N THR X 131 SHEET 1 AA2 5 LYS X 67 TYR X 70 0 SHEET 2 AA2 5 HIS X 51 ASN X 62 -1 N ASN X 62 O LYS X 67 SHEET 3 AA2 5 ALA X 228 LEU X 236 -1 O ILE X 234 N SER X 52 SHEET 4 AA2 5 PHE X 148 ILE X 156 -1 N ASN X 149 O SER X 235 SHEET 5 AA2 5 LYS X 104 ILE X 105 -1 N LYS X 104 O TYR X 154 SHEET 1 AA3 4 ARG X 162 HIS X 163 0 SHEET 2 AA3 4 ALA X 216 ILE X 221 -1 O ILE X 221 N ARG X 162 SHEET 3 AA3 4 LYS X 206 ASN X 213 -1 N LYS X 211 O HIS X 218 SHEET 4 AA3 4 LYS X 199 GLY X 203 -1 N ILE X 201 O PHE X 208 SHEET 1 AA4 2 THR X 184 ARG X 186 0 SHEET 2 AA4 2 GLU X 189 HIS X 191 -1 O GLU X 189 N ARG X 186 LINK O3' DG B 2 P 5IU B 3 1555 1555 1.60 LINK O3' 5IU B 3 P DT B 4 1555 1555 1.60 LINK O3' DT B 9 P 5IU B 10 1555 1555 1.61 LINK O3' 5IU B 10 P DG B 11 1555 1555 1.61 LINK OG SER X 151 CA CA X 601 1555 1555 2.77 LINK OG1ATHR X 153 CA CA X 601 1555 1555 2.62 LINK CA CA X 601 O2 EDO X 615 1555 1555 2.88 LINK CA CA X 601 O HOH X 732 1555 1555 2.96 SITE 1 AC1 4 SER X 151 THR X 153 EDO X 615 HOH X 732 SITE 1 AC2 3 DT B 4 DG B 5 THR X 101 SITE 1 AC3 6 DA A 11 MET X 49 PRO X 50 HIS X 51 SITE 2 AC3 6 HOH X 750 HOH X 758 SITE 1 AC4 9 LYS X 25 ASN X 149 VAL X 150 SER X 151 SITE 2 AC4 9 SER X 233 SER X 235 EDO X 610 HOH X 707 SITE 3 AC4 9 HOH X 763 SITE 1 AC5 6 GLY X 19 ASN X 20 ASN X 149 LYS X 237 SITE 2 AC5 6 ASN X 238 ASN X 239 SITE 1 AC6 5 HIS X 163 LEU X 164 LEU X 188 HIS X 218 SITE 2 AC6 5 VAL X 219 SITE 1 AC7 7 ALA X 23 LYS X 24 LYS X 25 SER X 33 SITE 2 AC7 7 ASP X 34 TYR X 44 HOH X 730 SITE 1 AC8 3 PRO X 42 PRO X 107 SER X 125 SITE 1 AC9 2 GLU X 253 HOH X 774 SITE 1 AD1 5 ASN X 20 PHE X 22 LYS X 25 THR X 38 SITE 2 AD1 5 EDO X 604 SITE 1 AD2 5 GLU X 91 ASN X 92 PHE X 93 SER X 94 SITE 2 AD2 5 HOH X 711 SITE 1 AD3 4 TYR X 18 PHE X 37 ILE X 256 HOH X 726 SITE 1 AD4 4 TYR X 13 ASP X 135 PHE X 136 ARG X 249 SITE 1 AD5 5 DC A 9 GLU X 7 LYS X 24 ASP X 34 SITE 2 AD5 5 HOH X 703 SITE 1 AD6 8 5IU B 3 LYS X 25 GLY X 26 LYS X 102 SITE 2 AD6 8 GLY X 103 THR X 153 CA X 601 HOH X 775 SITE 1 AD7 4 DG B 5 DC B 6 LYS X 158 ARG X 200 SITE 1 AD8 4 PHE X 68 MET X 86 SER X 90 HOH X 729 SITE 1 AD9 4 GLU X 145 HIS X 146 LYS X 237 HOH X 734 SITE 1 AE1 5 DG A 8 DC A 9 HOH A 802 DG B 7 SITE 2 AE1 5 HOH B 502 SITE 1 AE2 4 DA A 11 DC A 12 DT B 4 DG B 5 SITE 1 AE3 3 DA A 11 DC A 12 ASN X 2 SITE 1 AE4 5 DA A 5 DG A 6 HOH A 805 5IU B 10 SITE 2 AE4 5 LYS X 75 SITE 1 AE5 8 DC A 7 DG A 8 DG B 7 DC B 8 SITE 2 AE5 8 DT B 9 HOH B 502 ASP X 29 SER X 30 CRYST1 60.890 37.193 68.744 90.00 109.80 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016423 0.000000 0.005911 0.00000 SCALE2 0.000000 0.026887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015460 0.00000