HEADER TRANSFERASE 06-OCT-19 6UL5
TITLE CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH
TITLE 2 4-[(4-{4-[(E)-2-CYANOETHENYL]-2,6-DIMETHYLPHENOXY}THIENO[3,2-
TITLE 3 D]PYRIMIDIN-2-YL)AMINO]-2-FLUOROBENZONITRILE (24B), A NON-NUCLEOSIDE
TITLE 4 RT INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE P66;
COMPND 3 CHAIN: A;
COMPND 4 EC: 2.7.7.49;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: REVERSE TRANSCRIPTASE P51;
COMPND 9 CHAIN: B;
COMPND 10 ENGINEERED: YES;
COMPND 11 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1;
SOURCE 3 ORGANISM_COMMON: HIV-1;
SOURCE 4 ORGANISM_TAXID: 11676;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 MOL_ID: 2;
SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1;
SOURCE 9 ORGANISM_COMMON: HIV-1;
SOURCE 10 ORGANISM_TAXID: 11676;
SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS HUMAN IMMUNODEFICIENCY VIRUS 1, NON NUCLEOTIDE-REVERSE TRANSCRIPTASE
KEYWDS 2 INHIBITOR, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.X.RUIZ,A.PILCH,E.ARNOLD
REVDAT 3 11-OCT-23 6UL5 1 LINK
REVDAT 2 26-FEB-20 6UL5 1 JRNL
REVDAT 1 05-FEB-20 6UL5 0
JRNL AUTH D.KANG,F.X.RUIZ,D.FENG,A.PILCH,T.ZHAO,F.WEI,Z.WANG,Y.SUN,
JRNL AUTH 2 Z.FANG,E.DE CLERCQ,C.PANNECOUQUE,E.ARNOLD,X.LIU,P.ZHAN
JRNL TITL DISCOVERY AND CHARACTERIZATION OF FLUORINE-SUBSTITUTED
JRNL TITL 2 DIARYLPYRIMIDINE DERIVATIVES AS NOVEL HIV-1 NNRTIS WITH
JRNL TITL 3 HIGHLY IMPROVED RESISTANCE PROFILES AND LOW ACTIVITY FOR THE
JRNL TITL 4 HERG ION CHANNEL.
JRNL REF J.MED.CHEM. V. 63 1298 2020
JRNL REFN ISSN 0022-2623
JRNL PMID 31935327
JRNL DOI 10.1021/ACS.JMEDCHEM.9B01769
REMARK 2
REMARK 2 RESOLUTION. 2.23 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_3051
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.27
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 3 NUMBER OF REFLECTIONS : 59912
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.212
REMARK 3 R VALUE (WORKING SET) : 0.211
REMARK 3 FREE R VALUE : 0.245
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.340
REMARK 3 FREE R VALUE TEST SET COUNT : 2000
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 41.2700 - 5.3800 1.00 4369 151 0.1922 0.1831
REMARK 3 2 5.3800 - 4.2700 1.00 4255 147 0.1782 0.2056
REMARK 3 3 4.2700 - 3.7300 1.00 4254 147 0.1803 0.2193
REMARK 3 4 3.7300 - 3.3900 1.00 4223 145 0.2026 0.2491
REMARK 3 5 3.3900 - 3.1500 1.00 4235 147 0.2161 0.3056
REMARK 3 6 3.1500 - 2.9600 1.00 4213 146 0.2220 0.2682
REMARK 3 7 2.9600 - 2.8100 1.00 4213 145 0.2198 0.2761
REMARK 3 8 2.8100 - 2.6900 1.00 4214 145 0.2195 0.2632
REMARK 3 9 2.6900 - 2.5900 1.00 4225 147 0.2378 0.2821
REMARK 3 10 2.5900 - 2.5000 1.00 4211 145 0.2529 0.3102
REMARK 3 11 2.5000 - 2.4200 1.00 4171 144 0.2793 0.3253
REMARK 3 12 2.4200 - 2.3500 0.98 4100 141 0.2950 0.3266
REMARK 3 13 2.3500 - 2.2900 0.94 3966 137 0.3137 0.3444
REMARK 3 14 2.2900 - 2.2300 0.78 3263 113 0.3349 0.3505
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.326
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.548
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 43.39
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.99
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.004 8295
REMARK 3 ANGLE : 0.717 11275
REMARK 3 CHIRALITY : 0.045 1211
REMARK 3 PLANARITY : 0.006 1448
REMARK 3 DIHEDRAL : 16.878 3154
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6UL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-19.
REMARK 100 THE DEPOSITION ID IS D_1000244793.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-JUL-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.3
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 23-ID-B
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.03
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59921
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3
REMARK 200 DATA REDUNDANCY : 7.400
REMARK 200 R MERGE (I) : 0.12300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3200
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28
REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1
REMARK 200 DATA REDUNDANCY IN SHELL : 2.20
REMARK 200 R MERGE FOR SHELL (I) : 0.64200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.440
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4G1Q
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.95
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10%(V/V) PEG 8000, 4%(V/V) PEG 400,
REMARK 280 100 MM MES PH 6.3, 10 MM SPERMINE, 15 MM MGSO4, 100 MM AMMONIUM
REMARK 280 SULFATE, AND 5 MM TRIS(2-CARBOXYETHYL)PHOSPHINE, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 277.0K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.24400
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.53400
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.24400
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.53400
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 46800 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 770 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 555
REMARK 465 GLY B 0
REMARK 465 PRO B 1
REMARK 465 ILE B 2
REMARK 465 SER B 3
REMARK 465 PRO B 4
REMARK 465 THR B 216
REMARK 465 PRO B 217
REMARK 465 ASP B 218
REMARK 465 LYS B 219
REMARK 465 LYS B 220
REMARK 465 HIS B 221
REMARK 465 GLN B 222
REMARK 465 LYS B 223
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 PRO B 272 C - N - CD ANGL. DEV. = -13.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 MET A 184 -126.29 57.15
REMARK 500 LYS A 219 108.73 -57.82
REMARK 500 ILE A 270 -26.66 -147.44
REMARK 500 LEU A 282 1.49 -67.70
REMARK 500 LEU A 310 20.49 -79.60
REMARK 500 ASN B 136 14.33 59.45
REMARK 500 MET B 184 -122.02 52.78
REMARK 500 PHE B 227 16.72 -149.97
REMARK 500 LEU B 283 49.01 -81.97
REMARK 500 LYS B 347 69.46 -119.50
REMARK 500 ARG B 356 57.99 -105.47
REMARK 500 ALA B 360 40.13 -145.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 611 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 443 OD1
REMARK 620 2 ASP A 443 OD2 47.5
REMARK 620 3 HOH A 743 O 58.5 104.6
REMARK 620 4 HOH A 760 O 118.5 95.0 108.5
REMARK 620 5 HOH A 827 O 76.8 88.7 87.7 161.7
REMARK 620 6 HOH A 831 O 138.6 163.2 87.2 92.5 79.6
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue QAG A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 609
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 610
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 611
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504
DBREF 6UL5 A 1 555 UNP P03366 POL_HV1B1 600 1154
DBREF 6UL5 B 1 428 UNP P03366 POL_HV1B1 600 1027
SEQADV 6UL5 MET A -1 UNP P03366 INITIATING METHIONINE
SEQADV 6UL5 VAL A 0 UNP P03366 EXPRESSION TAG
SEQADV 6UL5 ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION
SEQADV 6UL5 ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION
SEQADV 6UL5 SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION
SEQADV 6UL5 GLY B 0 UNP P03366 EXPRESSION TAG
SEQADV 6UL5 SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION
SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS
SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP
SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE
SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE
SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE
SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP
SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU
SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS
SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR
SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR
SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY
SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS
SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE
SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE
SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU
SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG
SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS
SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR
SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL
SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN
SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR
SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG
SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU
SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU
SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS
SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN
SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU
SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR
SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE
SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS
SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP
SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP
SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR
SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE
SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY
SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL
SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU
SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU
SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE
SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL
SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL
SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY
SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY
SEQRES 1 B 429 GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU
SEQRES 2 B 429 LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO
SEQRES 3 B 429 LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS
SEQRES 4 B 429 THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY
SEQRES 5 B 429 PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS
SEQRES 6 B 429 LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE
SEQRES 7 B 429 ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL
SEQRES 8 B 429 GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS
SEQRES 9 B 429 LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE
SEQRES 10 B 429 SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA
SEQRES 11 B 429 PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE
SEQRES 12 B 429 ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY
SEQRES 13 B 429 SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU
SEQRES 14 B 429 GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR
SEQRES 15 B 429 GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU
SEQRES 16 B 429 ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN
SEQRES 17 B 429 HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS
SEQRES 18 B 429 HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU
SEQRES 19 B 429 LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU
SEQRES 20 B 429 PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS
SEQRES 21 B 429 LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO
SEQRES 22 B 429 GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY
SEQRES 23 B 429 THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU
SEQRES 24 B 429 ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS
SEQRES 25 B 429 GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP
SEQRES 26 B 429 LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP
SEQRES 27 B 429 THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS
SEQRES 28 B 429 THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN
SEQRES 29 B 429 ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR
SEQRES 30 B 429 THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE
SEQRES 31 B 429 LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP
SEQRES 32 B 429 THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU
SEQRES 33 B 429 PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN
HET QAG A 601 32
HET SO4 A 602 5
HET SO4 A 603 5
HET SO4 A 604 5
HET SO4 A 605 5
HET EDO A 606 4
HET EDO A 607 4
HET EDO A 608 4
HET EDO A 609 4
HET EDO A 610 4
HET MG A 611 1
HET SO4 B 501 5
HET SO4 B 502 5
HET SO4 B 503 5
HET EDO B 504 4
HETNAM QAG 4-[(4-{4-[(E)-2-CYANOETHENYL]-2,6-
HETNAM 2 QAG DIMETHYLPHENOXY}THIENO[3,2-D]PYRIMIDIN-2-YL)AMINO]-2-
HETNAM 3 QAG FLUOROBENZONITRILE
HETNAM SO4 SULFATE ION
HETNAM EDO 1,2-ETHANEDIOL
HETNAM MG MAGNESIUM ION
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 QAG C24 H16 F N5 O S
FORMUL 4 SO4 7(O4 S 2-)
FORMUL 8 EDO 6(C2 H6 O2)
FORMUL 13 MG MG 2+
FORMUL 18 HOH *317(H2 O)
HELIX 1 AA1 THR A 27 GLU A 44 1 18
HELIX 2 AA2 PHE A 77 THR A 84 1 8
HELIX 3 AA3 HIS A 96 LEU A 100 5 5
HELIX 4 AA4 ASP A 113 VAL A 118 5 6
HELIX 5 AA5 PHE A 124 ALA A 129 5 6
HELIX 6 AA6 SER A 134 GLU A 138 5 5
HELIX 7 AA7 GLY A 155 GLN A 174 1 20
HELIX 8 AA8 GLU A 194 ARG A 211 1 18
HELIX 9 AA9 THR A 253 SER A 268 1 16
HELIX 10 AB1 VAL A 276 LEU A 282 1 7
HELIX 11 AB2 THR A 296 LEU A 310 1 15
HELIX 12 AB3 ASN A 363 GLY A 384 1 22
HELIX 13 AB4 GLN A 394 TYR A 405 1 12
HELIX 14 AB5 THR A 473 ASP A 488 1 16
HELIX 15 AB6 SER A 499 GLN A 507 1 9
HELIX 16 AB7 SER A 515 LYS A 528 1 14
HELIX 17 AB8 GLY A 544 ALA A 554 1 11
HELIX 18 AB9 THR B 27 GLU B 44 1 18
HELIX 19 AC1 PHE B 77 THR B 84 1 8
HELIX 20 AC2 GLY B 99 LYS B 103 5 5
HELIX 21 AC3 GLY B 112 VAL B 118 5 7
HELIX 22 AC4 PHE B 124 ALA B 129 5 6
HELIX 23 AC5 SER B 134 GLU B 138 5 5
HELIX 24 AC6 LYS B 154 LEU B 168 1 15
HELIX 25 AC7 LEU B 168 ASN B 175 1 8
HELIX 26 AC8 GLU B 194 LEU B 214 1 21
HELIX 27 AC9 HIS B 235 TRP B 239 5 5
HELIX 28 AD1 VAL B 254 SER B 268 1 15
HELIX 29 AD2 VAL B 276 LEU B 283 1 8
HELIX 30 AD3 THR B 296 LEU B 310 1 15
HELIX 31 AD4 ASN B 363 GLY B 384 1 22
HELIX 32 AD5 GLN B 394 TRP B 402 1 9
HELIX 33 AD6 THR B 403 TYR B 405 5 3
HELIX 34 AD7 PRO B 421 LEU B 425 5 5
SHEET 1 AA1 3 ILE A 47 LYS A 49 0
SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48
SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142
SHEET 1 AA2 2 VAL A 60 LYS A 64 0
SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61
SHEET 1 AA3 3 SER A 105 ASP A 110 0
SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107
SHEET 3 AA3 3 ILE A 178 TYR A 183 -1 N TYR A 181 O TYR A 188
SHEET 1 AA4 3 PHE A 227 TRP A 229 0
SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227
SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233
SHEET 1 AA5 5 LYS A 347 ALA A 355 0
SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LEU A 349
SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342
SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327
SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391
SHEET 1 AA6 2 HIS A 361 THR A 362 0
SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362
SHEET 1 AA7 5 GLN A 464 LEU A 469 0
SHEET 2 AA7 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469
SHEET 3 AA7 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458
SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440
SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495
SHEET 1 AA8 3 ILE B 47 LYS B 49 0
SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48
SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142
SHEET 1 AA9 2 VAL B 60 ILE B 63 0
SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O LEU B 74 N PHE B 61
SHEET 1 AB1 4 VAL B 179 TYR B 183 0
SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181
SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N THR B 107 O VAL B 189
SHEET 4 AB1 4 TYR B 232 LEU B 234 -1 O LEU B 234 N VAL B 106
SHEET 1 AB2 2 TRP B 252 THR B 253 0
SHEET 2 AB2 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252
SHEET 1 AB3 5 ASN B 348 TYR B 354 0
SHEET 2 AB3 5 GLN B 336 TYR B 342 -1 N TRP B 337 O TYR B 354
SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342
SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327
SHEET 5 AB3 5 GLU B 413 PHE B 416 1 O GLU B 415 N PHE B 389
LINK OD1 ASP A 443 MG MG A 611 1555 1555 2.97
LINK OD2 ASP A 443 MG MG A 611 1555 1555 2.10
LINK MG MG A 611 O HOH A 743 1555 1555 2.16
LINK MG MG A 611 O HOH A 760 1555 1555 2.22
LINK MG MG A 611 O HOH A 827 1555 1555 2.11
LINK MG MG A 611 O HOH A 831 1555 1555 2.11
CISPEP 1 PRO A 225 PRO A 226 0 1.75
CISPEP 2 PRO A 420 PRO A 421 0 -1.16
SITE 1 AC1 13 LEU A 100 LYS A 101 LYS A 103 TYR A 181
SITE 2 AC1 13 TYR A 188 PHE A 227 TRP A 229 LEU A 234
SITE 3 AC1 13 HIS A 235 PRO A 236 TYR A 318 GLU B 138
SITE 4 AC1 13 HOH B 647
SITE 1 AC2 4 LYS A 73 TYR A 146 PRO A 150 GLN A 151
SITE 1 AC3 4 LYS A 476 SER A 515 GLU A 516 LEU A 517
SITE 1 AC4 5 LYS A 331 GLY A 333 GLN A 334 LYS A 512
SITE 2 AC4 5 HOH A 728
SITE 1 AC5 4 ARG A 277 GLN A 278 LYS A 281 HOH A 714
SITE 1 AC6 3 THR A 473 ASN A 474 GLN A 475
SITE 1 AC7 2 SER A 3 HOH A 722
SITE 1 AC8 5 LEU A 425 TRP A 426 TYR A 427 GLN A 509
SITE 2 AC8 5 HOH A 805
SITE 1 AC9 7 GLN A 161 ILE A 180 TYR A 181 GLN A 182
SITE 2 AC9 7 GLU B 138 THR B 139 PRO B 140
SITE 1 AD1 4 GLU A 6 VAL A 8 SER A 163 HOH A 830
SITE 1 AD2 7 ASP A 443 ASP A 498 ASP A 549 HOH A 743
SITE 2 AD2 7 HOH A 760 HOH A 827 HOH A 831
SITE 1 AD3 2 HIS B 235 TRP B 239
SITE 1 AD4 8 THR A 403 GLU A 404 TYR A 405 LYS B 331
SITE 2 AD4 8 GLN B 332 GLY B 333 LYS B 424 HOH B 682
SITE 1 AD5 4 LYS A 104 PRO B 97 ALA B 98 GLY B 99
SITE 1 AD6 5 TRP B 24 GLU B 399 TRP B 402 THR B 403
SITE 2 AD6 5 HOH B 601
CRYST1 162.488 73.068 109.085 90.00 100.29 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.006154 0.000000 0.001117 0.00000
SCALE2 0.000000 0.013686 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009317 0.00000