HEADER TRANSCRIPTION/INHIBITOR 08-OCT-19 6ULP TITLE BRD3-BD2 IN COMPLEX WITH THE CYCLIC PEPTIDE 3.2_3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SECOND BROMODOMAIN; COMPND 5 SYNONYM: RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIC PEPTIDE 3.2_3; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD3, KIAA0043, RING3L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS BET, BROMODOMAIN, MACROCYCLIC PEPTIDE, BRD3, INHIBITOR, RAPID, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.PATEL,J.L.WALSHE,L.J.WALPORT,J.P.MACKAY REVDAT 4 15-NOV-23 6ULP 1 REMARK REVDAT 3 11-OCT-23 6ULP 1 REMARK REVDAT 2 03-MAR-21 6ULP 1 JRNL REVDAT 1 19-AUG-20 6ULP 0 JRNL AUTH K.PATEL,L.J.WALPORT,J.L.WALSHE,P.D.SOLOMON,J.K.K.LOW, JRNL AUTH 2 D.H.TRAN,K.S.MOURADIAN,A.P.G.SILVA,L.WILKINSON-WHITE, JRNL AUTH 3 A.NORMAN,C.FRANCK,J.M.MATTHEWS,J.M.GUSS,R.J.PAYNE, JRNL AUTH 4 T.PASSIOURA,H.SUGA,J.P.MACKAY JRNL TITL CYCLIC PEPTIDES CAN ENGAGE A SINGLE BINDING POCKET THROUGH JRNL TITL 2 HIGHLY DIVERGENT MODES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 26728 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33046654 JRNL DOI 10.1073/PNAS.2003086117 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0500 - 4.0400 1.00 2931 116 0.1766 0.2024 REMARK 3 2 4.0400 - 3.2100 1.00 2842 172 0.2557 0.2930 REMARK 3 3 3.2100 - 2.8000 0.99 2818 138 0.3264 0.3737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.529 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 96.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1993 REMARK 3 ANGLE : 0.559 2679 REMARK 3 CHIRALITY : 0.038 266 REMARK 3 PLANARITY : 0.004 343 REMARK 3 DIHEDRAL : 10.481 1214 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 307 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4107 38.5734 16.7486 REMARK 3 T TENSOR REMARK 3 T11: 1.3874 T22: 1.1546 REMARK 3 T33: 0.9574 T12: -0.0764 REMARK 3 T13: 0.0284 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 9.1531 L22: 5.4695 REMARK 3 L33: 3.1962 L12: -5.3797 REMARK 3 L13: -2.7944 L23: 3.8332 REMARK 3 S TENSOR REMARK 3 S11: -1.0176 S12: -1.4616 S13: 0.0006 REMARK 3 S21: 2.4926 S22: 0.5954 S23: 0.8571 REMARK 3 S31: -0.0742 S32: -0.5354 S33: 0.3069 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4528 35.2607 2.6320 REMARK 3 T TENSOR REMARK 3 T11: 0.9231 T22: 0.8306 REMARK 3 T33: 0.9231 T12: 0.0008 REMARK 3 T13: -0.0988 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 9.4701 L22: 8.1109 REMARK 3 L33: 6.1434 L12: 2.3979 REMARK 3 L13: -0.2111 L23: -0.5101 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: 0.3012 S13: -0.0155 REMARK 3 S21: -0.0020 S22: 0.0441 S23: -1.0609 REMARK 3 S31: -0.0175 S32: 0.5714 S33: -0.1032 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 308 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0281 22.4932 -13.8852 REMARK 3 T TENSOR REMARK 3 T11: 1.3970 T22: 1.4674 REMARK 3 T33: 0.9394 T12: 0.0939 REMARK 3 T13: -0.0669 T23: 0.1902 REMARK 3 L TENSOR REMARK 3 L11: 2.5564 L22: 3.2678 REMARK 3 L33: 4.5985 L12: 0.0115 REMARK 3 L13: 0.6028 L23: -1.9920 REMARK 3 S TENSOR REMARK 3 S11: 0.6245 S12: 2.4047 S13: 0.3812 REMARK 3 S21: -1.4320 S22: -0.3181 S23: 0.4333 REMARK 3 S31: -0.0479 S32: 0.5162 S33: -0.2162 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 328 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8767 28.7639 1.9856 REMARK 3 T TENSOR REMARK 3 T11: 0.9918 T22: 0.8399 REMARK 3 T33: 1.2414 T12: 0.0361 REMARK 3 T13: 0.1342 T23: 0.1210 REMARK 3 L TENSOR REMARK 3 L11: 7.8217 L22: 7.0953 REMARK 3 L33: 6.6509 L12: -4.0979 REMARK 3 L13: 3.0653 L23: 2.6160 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: -0.5526 S13: 1.7072 REMARK 3 S21: 0.2538 S22: 0.3091 S23: -0.3060 REMARK 3 S31: -0.9941 S32: -0.2784 S33: -0.2605 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 396 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0175 15.8737 -3.6225 REMARK 3 T TENSOR REMARK 3 T11: 1.0898 T22: 0.8837 REMARK 3 T33: 0.8734 T12: -0.0782 REMARK 3 T13: -0.0569 T23: 0.1475 REMARK 3 L TENSOR REMARK 3 L11: 6.9101 L22: 7.7981 REMARK 3 L33: 5.5212 L12: -5.8051 REMARK 3 L13: 2.4187 L23: 1.5757 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: -0.0658 S13: -1.2246 REMARK 3 S21: -0.7956 S22: -0.0232 S23: 1.4993 REMARK 3 S31: 1.0068 S32: -0.1516 S33: 0.1051 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0275 29.5002 2.5792 REMARK 3 T TENSOR REMARK 3 T11: 1.1928 T22: 1.4690 REMARK 3 T33: 1.1112 T12: 0.1517 REMARK 3 T13: 0.1138 T23: -0.0975 REMARK 3 L TENSOR REMARK 3 L11: 4.9575 L22: 6.9531 REMARK 3 L33: 6.3992 L12: -3.8428 REMARK 3 L13: -3.7520 L23: -0.8868 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: -0.5538 S13: 1.0642 REMARK 3 S21: 0.2028 S22: 0.9172 S23: -0.6163 REMARK 3 S31: 0.6138 S32: -0.4022 S33: -0.7572 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 308 THROUGH 356 OR REMARK 3 RESID 358 THROUGH 402 OR RESID 404 REMARK 3 THROUGH 410 OR RESID 412 THROUGH 415)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 308 THROUGH 356 OR REMARK 3 RESID 358 THROUGH 402 OR RESID 404 REMARK 3 THROUGH 410 OR RESID 412 THROUGH 415)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ULP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000243905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9024 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3S92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 0.1 REMARK 280 M TRIS 8.0, 20 % W/V PEG 6000, PH 8.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.78400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.78400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.87400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.78400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.78400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.87400 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.78400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.78400 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.87400 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.78400 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.78400 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.87400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 301 REMARK 465 GLY A 302 REMARK 465 PRO A 303 REMARK 465 LEU A 304 REMARK 465 GLY A 305 REMARK 465 SER A 306 REMARK 465 ASP A 417 REMARK 465 GLU A 418 REMARK 465 PRO A 419 REMARK 465 GLN B 301 REMARK 465 GLY B 302 REMARK 465 PRO B 303 REMARK 465 LEU B 304 REMARK 465 GLY B 305 REMARK 465 SER B 306 REMARK 465 LYS B 307 REMARK 465 ASP B 417 REMARK 465 GLU B 418 REMARK 465 PRO B 419 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR B 390 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 12 O - C - N ANGL. DEV. = -26.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 414 67.83 -107.96 REMARK 500 LYS B 414 68.60 -107.82 REMARK 500 GLN C 3 -90.25 -115.90 REMARK 500 TRP C 4 -166.40 66.19 REMARK 500 LYS C 5 85.81 -58.81 REMARK 500 LEU C 9 112.39 -169.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ULP A 307 419 UNP Q15059 BRD3_HUMAN 307 419 DBREF 6ULP B 307 419 UNP Q15059 BRD3_HUMAN 307 419 DBREF 6ULP C 0 13 PDB 6ULP 6ULP 0 13 SEQADV 6ULP GLN A 301 UNP Q15059 EXPRESSION TAG SEQADV 6ULP GLY A 302 UNP Q15059 EXPRESSION TAG SEQADV 6ULP PRO A 303 UNP Q15059 EXPRESSION TAG SEQADV 6ULP LEU A 304 UNP Q15059 EXPRESSION TAG SEQADV 6ULP GLY A 305 UNP Q15059 EXPRESSION TAG SEQADV 6ULP SER A 306 UNP Q15059 EXPRESSION TAG SEQADV 6ULP GLN B 301 UNP Q15059 EXPRESSION TAG SEQADV 6ULP GLY B 302 UNP Q15059 EXPRESSION TAG SEQADV 6ULP PRO B 303 UNP Q15059 EXPRESSION TAG SEQADV 6ULP LEU B 304 UNP Q15059 EXPRESSION TAG SEQADV 6ULP GLY B 305 UNP Q15059 EXPRESSION TAG SEQADV 6ULP SER B 306 UNP Q15059 EXPRESSION TAG SEQRES 1 A 119 GLN GLY PRO LEU GLY SER LYS LEU SER GLU HIS LEU ARG SEQRES 2 A 119 TYR CYS ASP SER ILE LEU ARG GLU MET LEU SER LYS LYS SEQRES 3 A 119 HIS ALA ALA TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP SEQRES 4 A 119 ALA GLU ALA LEU GLU LEU HIS ASP TYR HIS ASP ILE ILE SEQRES 5 A 119 LYS HIS PRO MET ASP LEU SER THR VAL LYS ARG LYS MET SEQRES 6 A 119 ASP GLY ARG GLU TYR PRO ASP ALA GLN GLY PHE ALA ALA SEQRES 7 A 119 ASP VAL ARG LEU MET PHE SER ASN CYS TYR LYS TYR ASN SEQRES 8 A 119 PRO PRO ASP HIS GLU VAL VAL ALA MET ALA ARG LYS LEU SEQRES 9 A 119 GLN ASP VAL PHE GLU MET ARG PHE ALA LYS MET PRO ASP SEQRES 10 A 119 GLU PRO SEQRES 1 B 119 GLN GLY PRO LEU GLY SER LYS LEU SER GLU HIS LEU ARG SEQRES 2 B 119 TYR CYS ASP SER ILE LEU ARG GLU MET LEU SER LYS LYS SEQRES 3 B 119 HIS ALA ALA TYR ALA TRP PRO PHE TYR LYS PRO VAL ASP SEQRES 4 B 119 ALA GLU ALA LEU GLU LEU HIS ASP TYR HIS ASP ILE ILE SEQRES 5 B 119 LYS HIS PRO MET ASP LEU SER THR VAL LYS ARG LYS MET SEQRES 6 B 119 ASP GLY ARG GLU TYR PRO ASP ALA GLN GLY PHE ALA ALA SEQRES 7 B 119 ASP VAL ARG LEU MET PHE SER ASN CYS TYR LYS TYR ASN SEQRES 8 B 119 PRO PRO ASP HIS GLU VAL VAL ALA MET ALA ARG LYS LEU SEQRES 9 B 119 GLN ASP VAL PHE GLU MET ARG PHE ALA LYS MET PRO ASP SEQRES 10 B 119 GLU PRO SEQRES 1 C 14 ACE TRP ALY GLN TRP LYS ALY TYR GLY LEU LYS ILE CYS SEQRES 2 C 14 NH2 HET ACE C 0 3 HET ALY C 2 12 HET ALY C 6 12 HET NH2 C 13 1 HETNAM ACE ACETYL GROUP HETNAM ALY N(6)-ACETYLLYSINE HETNAM NH2 AMINO GROUP FORMUL 3 ACE C2 H4 O FORMUL 3 ALY 2(C8 H16 N2 O3) FORMUL 3 NH2 H2 N HELIX 1 AA1 SER A 309 LEU A 323 1 15 HELIX 2 AA2 SER A 324 LYS A 326 5 3 HELIX 3 AA3 HIS A 327 TRP A 332 1 6 HELIX 4 AA4 PRO A 333 TYR A 335 5 3 HELIX 5 AA5 ASP A 347 ILE A 352 1 6 HELIX 6 AA6 ASP A 357 GLY A 367 1 11 HELIX 7 AA7 ASP A 372 ASN A 391 1 20 HELIX 8 AA8 HIS A 395 LYS A 414 1 20 HELIX 9 AA9 SER B 309 LEU B 323 1 15 HELIX 10 AB1 HIS B 327 TRP B 332 1 6 HELIX 11 AB2 PRO B 333 TYR B 335 5 3 HELIX 12 AB3 ASP B 347 ILE B 352 1 6 HELIX 13 AB4 ASP B 357 GLY B 367 1 11 HELIX 14 AB5 ASP B 372 ASN B 391 1 20 HELIX 15 AB6 HIS B 395 ALA B 413 1 19 LINK C ACE C 0 N TRP C 1 1555 1555 1.33 LINK CH3 ACE C 0 SG CYS C 12 1555 1555 1.77 LINK C TRP C 1 N ALY C 2 1555 1555 1.33 LINK C ALY C 2 N GLN C 3 1555 1555 1.33 LINK C LYS C 5 N ALY C 6 1555 1555 1.33 LINK C ALY C 6 N TYR C 7 1555 1555 1.33 LINK C CYS C 12 N NH2 C 13 1555 1555 1.43 CRYST1 97.568 97.568 77.748 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012862 0.00000