HEADER VIRAL PROTEIN 08-OCT-19 6UM3 TITLE STRUCTURE OF ZIKA VIRUS NS2B-NS3 PROTEASE MUTANT STABILIZING THE TITLE 2 SUPER-OPEN CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS2B-NS3 PROTEASE FUSION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVIVIRUS, SERINE PROTEASE, ZIKA VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.ALESHIN,S.A.SHIRYAEV,R.C.LIDDINGTON REVDAT 2 11-OCT-23 6UM3 1 REMARK REVDAT 1 19-FEB-20 6UM3 0 JRNL AUTH A.E.ALESHIN,S.A.SHIRYAEV,R.C.LIDDINGTON JRNL TITL STRUCTURE OF ZIKA VIRUS NS2B-NS3 PROTEASE MUTANT STABILIZING JRNL TITL 2 THE SUPER-OPEN CONFORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 10386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 637 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.33000 REMARK 3 B22 (A**2) : 2.83000 REMARK 3 B33 (A**2) : -3.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.505 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2514 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2324 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3410 ; 1.481 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5373 ; 1.187 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 7.157 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;30.140 ;21.613 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 403 ;17.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2839 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 49 68 B 49 68 407 0.120 0.050 REMARK 3 2 A 18 156 B 18 156 3916 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6UM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979460 REMARK 200 MONOCHROMATOR : SI(111) AND SI(220) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10922 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TFO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, NACL, TRIS-CL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.94900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 46 REMARK 465 SER A 47 REMARK 465 SER A 48 REMARK 465 GLY A 965 REMARK 465 ASN A 966 REMARK 465 SER A 967 REMARK 465 PRO A 968 REMARK 465 ARG A 969 REMARK 465 LEU A 970 REMARK 465 ASP A 971 REMARK 465 VAL A 972 REMARK 465 ALA A 973 REMARK 465 LEU A 974 REMARK 465 ASP A 975 REMARK 465 GLU A 976 REMARK 465 SER A 977 REMARK 465 GLY A 978 REMARK 465 ASP A 979 REMARK 465 PHE A 980 REMARK 465 SER A 981 REMARK 465 LEU A 982 REMARK 465 VAL A 983 REMARK 465 GLU A 984 REMARK 465 ASP A 985 REMARK 465 ASP A 986 REMARK 465 GLY A 987 REMARK 465 PRO A 988 REMARK 465 PRO A 989 REMARK 465 MET A 990 REMARK 465 ALA A 991 REMARK 465 GLY A 992 REMARK 465 GLY A 993 REMARK 465 GLY A 994 REMARK 465 GLY A 995 REMARK 465 SER A 996 REMARK 465 GLY A 997 REMARK 465 GLY A 998 REMARK 465 GLY A 999 REMARK 465 GLY A 1000 REMARK 465 SER A 1001 REMARK 465 GLY A 1002 REMARK 465 ALA A 1003 REMARK 465 LEU A 1004 REMARK 465 TRP A 1005 REMARK 465 ASP A 1006 REMARK 465 VAL A 1007 REMARK 465 PRO A 1008 REMARK 465 ALA A 1009 REMARK 465 PRO A 1010 REMARK 465 LYS A 1011 REMARK 465 GLU A 1012 REMARK 465 VAL A 1013 REMARK 465 LYS A 1014 REMARK 465 LYS A 1015 REMARK 465 ASN A 1158 REMARK 465 GLY A 1159 REMARK 465 SER A 1160 REMARK 465 TYR A 1161 REMARK 465 VAL A 1162 REMARK 465 SER A 1163 REMARK 465 ALA A 1164 REMARK 465 ILE A 1165 REMARK 465 THR A 1166 REMARK 465 GLN A 1167 REMARK 465 GLY A 1168 REMARK 465 ARG A 1169 REMARK 465 ARG A 1170 REMARK 465 GLU A 1171 REMARK 465 GLU A 1172 REMARK 465 GLU A 1173 REMARK 465 THR A 1174 REMARK 465 PRO A 1175 REMARK 465 VAL A 1176 REMARK 465 GLU A 1177 REMARK 465 SER A 1178 REMARK 465 PHE A 1179 REMARK 465 GLU A 1180 REMARK 465 PRO A 1181 REMARK 465 SER A 1182 REMARK 465 GLY B 46 REMARK 465 SER B 47 REMARK 465 SER B 48 REMARK 465 GLY B 965 REMARK 465 ASN B 966 REMARK 465 SER B 967 REMARK 465 PRO B 968 REMARK 465 ARG B 969 REMARK 465 LEU B 970 REMARK 465 ASP B 971 REMARK 465 VAL B 972 REMARK 465 ALA B 973 REMARK 465 LEU B 974 REMARK 465 ASP B 975 REMARK 465 GLU B 976 REMARK 465 SER B 977 REMARK 465 GLY B 978 REMARK 465 ASP B 979 REMARK 465 PHE B 980 REMARK 465 SER B 981 REMARK 465 LEU B 982 REMARK 465 VAL B 983 REMARK 465 GLU B 984 REMARK 465 ASP B 985 REMARK 465 ASP B 986 REMARK 465 GLY B 987 REMARK 465 PRO B 988 REMARK 465 PRO B 989 REMARK 465 MET B 990 REMARK 465 ALA B 991 REMARK 465 GLY B 992 REMARK 465 GLY B 993 REMARK 465 GLY B 994 REMARK 465 GLY B 995 REMARK 465 SER B 996 REMARK 465 GLY B 997 REMARK 465 GLY B 998 REMARK 465 GLY B 999 REMARK 465 GLY B 1000 REMARK 465 SER B 1001 REMARK 465 GLY B 1002 REMARK 465 ALA B 1003 REMARK 465 LEU B 1004 REMARK 465 TRP B 1005 REMARK 465 ASP B 1006 REMARK 465 VAL B 1007 REMARK 465 PRO B 1008 REMARK 465 ALA B 1009 REMARK 465 PRO B 1010 REMARK 465 LYS B 1011 REMARK 465 GLU B 1012 REMARK 465 VAL B 1013 REMARK 465 LYS B 1014 REMARK 465 LYS B 1015 REMARK 465 GLY B 1016 REMARK 465 GLU B 1017 REMARK 465 GLY B 1159 REMARK 465 SER B 1160 REMARK 465 TYR B 1161 REMARK 465 VAL B 1162 REMARK 465 SER B 1163 REMARK 465 ALA B 1164 REMARK 465 ILE B 1165 REMARK 465 THR B 1166 REMARK 465 GLN B 1167 REMARK 465 GLY B 1168 REMARK 465 ARG B 1169 REMARK 465 ARG B 1170 REMARK 465 GLU B 1171 REMARK 465 GLU B 1172 REMARK 465 GLU B 1173 REMARK 465 THR B 1174 REMARK 465 PRO B 1175 REMARK 465 VAL B 1176 REMARK 465 GLU B 1177 REMARK 465 SER B 1178 REMARK 465 PHE B 1179 REMARK 465 GLU B 1180 REMARK 465 PRO B 1181 REMARK 465 SER B 1182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 49 CG1 CG2 REMARK 470 VAL B 49 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B1030 -122.13 56.30 REMARK 500 HIS B1092 -37.58 -145.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1201 DBREF1 6UM3 A 48 990 UNP A0A1V0E2E5_ZIKV DBREF2 6UM3 A A0A1V0E2E5 1420 1466 DBREF1 6UM3 A 1001 1182 UNP A0A219YLK5_ZIKV DBREF2 6UM3 A A0A219YLK5 1499 1680 DBREF1 6UM3 B 48 990 UNP A0A1V0E2E5_ZIKV DBREF2 6UM3 B A0A1V0E2E5 1420 1466 DBREF1 6UM3 B 1001 1182 UNP A0A219YLK5_ZIKV DBREF2 6UM3 B A0A219YLK5 1499 1680 SEQADV 6UM3 GLY A 46 UNP A0A1V0E2E EXPRESSION TAG SEQADV 6UM3 SER A 47 UNP A0A1V0E2E EXPRESSION TAG SEQADV 6UM3 ALA A 991 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 992 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 993 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 994 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 995 UNP A0A1V0E2E LINKER SEQADV 6UM3 SER A 996 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 997 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 998 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 999 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY A 1000 UNP A0A1V0E2E LINKER SEQADV 6UM3 SER A 1080 UNP A0A219YLK CYS 1578 CONFLICT SEQADV 6UM3 CYS A 1088 UNP A0A219YLK ALA 1586 CONFLICT SEQADV 6UM3 SER A 1143 UNP A0A219YLK CYS 1641 CONFLICT SEQADV 6UM3 CYS A 1157 UNP A0A219YLK LYS 1655 CONFLICT SEQADV 6UM3 SER A 1178 UNP A0A219YLK CYS 1676 CONFLICT SEQADV 6UM3 GLY B 46 UNP A0A1V0E2E EXPRESSION TAG SEQADV 6UM3 SER B 47 UNP A0A1V0E2E EXPRESSION TAG SEQADV 6UM3 ALA B 991 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 992 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 993 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 994 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 995 UNP A0A1V0E2E LINKER SEQADV 6UM3 SER B 996 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 997 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 998 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 999 UNP A0A1V0E2E LINKER SEQADV 6UM3 GLY B 1000 UNP A0A1V0E2E LINKER SEQADV 6UM3 SER B 1080 UNP A0A219YLK CYS 1578 CONFLICT SEQADV 6UM3 CYS B 1088 UNP A0A219YLK ALA 1586 CONFLICT SEQADV 6UM3 SER B 1143 UNP A0A219YLK CYS 1641 CONFLICT SEQADV 6UM3 CYS B 1157 UNP A0A219YLK LYS 1655 CONFLICT SEQADV 6UM3 SER B 1178 UNP A0A219YLK CYS 1676 CONFLICT SEQRES 1 A 241 GLY SER SER VAL ASP MET TYR ILE GLU ARG ALA GLY ASP SEQRES 2 A 241 ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY ASN SER SEQRES 3 A 241 PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY ASP PHE SEQRES 4 A 241 SER LEU VAL GLU ASP ASP GLY PRO PRO MET ALA GLY GLY SEQRES 5 A 241 GLY GLY SER GLY GLY GLY GLY SER GLY ALA LEU TRP ASP SEQRES 6 A 241 VAL PRO ALA PRO LYS GLU VAL LYS LYS GLY GLU THR THR SEQRES 7 A 241 ASP GLY VAL TYR ARG VAL MET THR ARG ARG LEU LEU GLY SEQRES 8 A 241 SER THR GLN VAL GLY VAL GLY VAL MET GLN GLU GLY VAL SEQRES 9 A 241 PHE HIS THR MET TRP HIS VAL THR LYS GLY SER ALA LEU SEQRES 10 A 241 ARG SER GLY GLU GLY ARG LEU ASP PRO TYR TRP GLY ASP SEQRES 11 A 241 VAL LYS GLN ASP LEU VAL SER TYR SER GLY PRO TRP LYS SEQRES 12 A 241 LEU ASP ALA CYS TRP ASP GLY HIS SER GLU VAL GLN LEU SEQRES 13 A 241 LEU ALA VAL PRO PRO GLY GLU ARG ALA ARG ASN ILE GLN SEQRES 14 A 241 THR LEU PRO GLY ILE PHE LYS THR LYS ASP GLY ASP ILE SEQRES 15 A 241 GLY ALA VAL ALA LEU ASP TYR PRO ALA GLY THR SER GLY SEQRES 16 A 241 SER PRO ILE LEU ASP LYS SER GLY ARG VAL ILE GLY LEU SEQRES 17 A 241 TYR GLY ASN GLY VAL VAL ILE CYS ASN GLY SER TYR VAL SEQRES 18 A 241 SER ALA ILE THR GLN GLY ARG ARG GLU GLU GLU THR PRO SEQRES 19 A 241 VAL GLU SER PHE GLU PRO SER SEQRES 1 B 241 GLY SER SER VAL ASP MET TYR ILE GLU ARG ALA GLY ASP SEQRES 2 B 241 ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY ASN SER SEQRES 3 B 241 PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY ASP PHE SEQRES 4 B 241 SER LEU VAL GLU ASP ASP GLY PRO PRO MET ALA GLY GLY SEQRES 5 B 241 GLY GLY SER GLY GLY GLY GLY SER GLY ALA LEU TRP ASP SEQRES 6 B 241 VAL PRO ALA PRO LYS GLU VAL LYS LYS GLY GLU THR THR SEQRES 7 B 241 ASP GLY VAL TYR ARG VAL MET THR ARG ARG LEU LEU GLY SEQRES 8 B 241 SER THR GLN VAL GLY VAL GLY VAL MET GLN GLU GLY VAL SEQRES 9 B 241 PHE HIS THR MET TRP HIS VAL THR LYS GLY SER ALA LEU SEQRES 10 B 241 ARG SER GLY GLU GLY ARG LEU ASP PRO TYR TRP GLY ASP SEQRES 11 B 241 VAL LYS GLN ASP LEU VAL SER TYR SER GLY PRO TRP LYS SEQRES 12 B 241 LEU ASP ALA CYS TRP ASP GLY HIS SER GLU VAL GLN LEU SEQRES 13 B 241 LEU ALA VAL PRO PRO GLY GLU ARG ALA ARG ASN ILE GLN SEQRES 14 B 241 THR LEU PRO GLY ILE PHE LYS THR LYS ASP GLY ASP ILE SEQRES 15 B 241 GLY ALA VAL ALA LEU ASP TYR PRO ALA GLY THR SER GLY SEQRES 16 B 241 SER PRO ILE LEU ASP LYS SER GLY ARG VAL ILE GLY LEU SEQRES 17 B 241 TYR GLY ASN GLY VAL VAL ILE CYS ASN GLY SER TYR VAL SEQRES 18 B 241 SER ALA ILE THR GLN GLY ARG ARG GLU GLU GLU THR PRO SEQRES 19 B 241 VAL GLU SER PHE GLU PRO SER HET EDO A1201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *70(H2 O) HELIX 1 AA1 MET A 1049 LYS A 1054 1 6 HELIX 2 AA2 MET B 1049 LYS B 1054 1 6 SHEET 1 AA1 6 MET A 51 GLY A 57 0 SHEET 2 AA1 6 GLY A1021 ARG A1029 -1 O VAL A1022 N ALA A 56 SHEET 3 AA1 6 GLY A1032 GLN A1042 -1 O GLY A1037 N VAL A1025 SHEET 4 AA1 6 VAL A1045 THR A1048 -1 O HIS A1047 N VAL A1040 SHEET 5 AA1 6 LEU A1076 TYR A1079 -1 O VAL A1077 N THR A1048 SHEET 6 AA1 6 PRO A1067 ASP A1071 -1 N TRP A1069 O SER A1078 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 ARG A1107 THR A1111 1 O GLN A1110 N GLU A 66 SHEET 3 AA2 5 VAL A1095 ALA A1099 -1 N VAL A1095 O THR A1111 SHEET 4 AA2 5 PRO A1138 LEU A1140 -1 O LEU A1140 N GLN A1096 SHEET 5 AA2 5 VAL A1146 LEU A1149 -1 O ILE A1147 N ILE A1139 SHEET 1 AA3 2 LEU A1058 SER A1060 0 SHEET 2 AA3 2 GLY A1063 LEU A1065 -1 O LEU A1065 N LEU A1058 SHEET 1 AA4 2 GLY A1114 LYS A1117 0 SHEET 2 AA4 2 ASP A1122 ALA A1125 -1 O ILE A1123 N PHE A1116 SHEET 1 AA5 6 ASP B 50 GLY B 57 0 SHEET 2 AA5 6 GLY B1021 ARG B1029 -1 O MET B1026 N TYR B 52 SHEET 3 AA5 6 GLY B1032 GLN B1042 -1 O GLY B1037 N VAL B1025 SHEET 4 AA5 6 VAL B1045 THR B1048 -1 O HIS B1047 N VAL B1040 SHEET 5 AA5 6 LEU B1076 TYR B1079 -1 O VAL B1077 N THR B1048 SHEET 6 AA5 6 PRO B1067 ASP B1071 -1 N TRP B1069 O SER B1078 SHEET 1 AA6 6 GLU B 66 VAL B 67 0 SHEET 2 AA6 6 ARG B1107 THR B1111 1 O GLN B1110 N GLU B 66 SHEET 3 AA6 6 VAL B1095 ALA B1099 -1 N LEU B1097 O ILE B1109 SHEET 4 AA6 6 PRO B1138 LEU B1140 -1 O LEU B1140 N GLN B1096 SHEET 5 AA6 6 VAL B1146 LEU B1149 -1 O ILE B1147 N ILE B1139 SHEET 6 AA6 6 GLY B1153 VAL B1154 -1 N GLY B1153 O LEU B1149 SHEET 1 AA7 2 LEU B1058 SER B1060 0 SHEET 2 AA7 2 GLY B1063 LEU B1065 -1 O LEU B1065 N LEU B1058 SHEET 1 AA8 2 GLY B1114 LYS B1117 0 SHEET 2 AA8 2 ASP B1122 ALA B1125 -1 O ILE B1123 N PHE B1116 SSBOND 1 CYS A 1088 CYS A 1157 1555 1555 2.06 SSBOND 2 CYS B 1088 CYS B 1157 1555 1555 1.99 SITE 1 AC1 5 ARG A1024 MET A1026 GLN A1035 PRO A1102 SITE 2 AC1 5 GLY A1103 CRYST1 51.742 55.898 61.675 90.00 112.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019327 0.000000 0.008166 0.00000 SCALE2 0.000000 0.017890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017602 0.00000