HEADER LYASE 11-OCT-19 6UND TITLE PSEUDOMONAS FLUORESCENS ISOCYANIDE HYDRATASE THIOIMIDATE INTERMEDIATE TITLE 2 AT 298 K XFEL DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISONITRILE HYDRATASE INHA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS (STRAIN ATCC BAA-477 / SOURCE 3 NRRL B-23932 / PF-5); SOURCE 4 ORGANISM_TAXID: 220664; SOURCE 5 STRAIN: ATCC BAA-477 / NRRL B-23932 / PF-5; SOURCE 6 GENE: INHA, PFL_4109; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS COVALENT CATALYTIC INTERMEDIATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DASGUPTA,H.VAN DEN BEDEM,M.A.WILSON REVDAT 5 16-OCT-24 6UND 1 REMARK REVDAT 4 11-OCT-23 6UND 1 REMARK REVDAT 3 01-JAN-20 6UND 1 JRNL REVDAT 2 18-DEC-19 6UND 1 JRNL REVDAT 1 20-NOV-19 6UND 0 JRNL AUTH M.DASGUPTA,D.BUDDAY,S.H.P.DE OLIVEIRA,P.MADZELAN, JRNL AUTH 2 D.MARCHANY-RIVERA,J.SERAVALLI,B.HAYES,R.G.SIERRA,S.BOUTET, JRNL AUTH 3 M.S.HUNTER,R.ALONSO-MORI,A.BATYUK,J.WIERMAN,A.LYUBIMOV, JRNL AUTH 4 A.S.BREWSTER,N.K.SAUTER,G.A.APPLEGATE,V.K.TIWARI, JRNL AUTH 5 D.B.BERKOWITZ,M.C.THOMPSON,A.E.COHEN,J.S.FRASER,M.E.WALL, JRNL AUTH 6 H.VAN DEN BEDEM,M.A.WILSON JRNL TITL MIX-AND-INJECT XFEL CRYSTALLOGRAPHY REVEALS GATED JRNL TITL 2 CONFORMATIONAL DYNAMICS DURING ENZYME CATALYSIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 25634 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31801874 JRNL DOI 10.1073/PNAS.1901864116 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.1000 - 3.7300 0.99 4167 148 0.1311 0.1327 REMARK 3 2 3.7300 - 2.9600 1.00 4129 146 0.1360 0.1792 REMARK 3 3 2.9600 - 2.5900 1.00 4105 142 0.1591 0.2004 REMARK 3 4 2.5900 - 2.3500 1.00 4100 141 0.1505 0.1786 REMARK 3 5 2.3500 - 2.1800 1.00 4078 142 0.1517 0.1711 REMARK 3 6 2.1800 - 2.0600 1.00 4101 145 0.1575 0.1945 REMARK 3 7 2.0600 - 1.9500 1.00 4071 135 0.1742 0.2119 REMARK 3 8 1.9500 - 1.8700 1.00 4094 144 0.1850 0.2375 REMARK 3 9 1.8700 - 1.8000 1.00 4073 134 0.2029 0.2484 REMARK 3 10 1.8000 - 1.7300 1.00 4106 147 0.2287 0.2575 REMARK 3 11 1.7300 - 1.6800 1.00 4023 138 0.2387 0.2636 REMARK 3 12 1.6800 - 1.6300 1.00 4076 143 0.2587 0.3279 REMARK 3 13 1.6300 - 1.5900 1.00 4069 140 0.2869 0.3060 REMARK 3 14 1.5900 - 1.5500 0.99 4036 141 0.3220 0.3141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.172 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.036 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3560 REMARK 3 ANGLE : 0.779 4881 REMARK 3 CHIRALITY : 0.048 572 REMARK 3 PLANARITY : 0.005 652 REMARK 3 DIHEDRAL : 12.716 2131 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9343 24.5517 21.2082 REMARK 3 T TENSOR REMARK 3 T11: 0.1180 T22: 0.1215 REMARK 3 T33: 0.1378 T12: 0.0187 REMARK 3 T13: -0.0048 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.8837 L22: 1.6000 REMARK 3 L33: 1.7937 L12: 0.5195 REMARK 3 L13: -0.4451 L23: -0.4588 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: 0.2046 S13: 0.1688 REMARK 3 S21: -0.0303 S22: 0.0672 S23: 0.2053 REMARK 3 S31: -0.1826 S32: -0.1830 S33: -0.0448 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8652 24.5907 27.0673 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.2741 REMARK 3 T33: 0.2115 T12: 0.0341 REMARK 3 T13: 0.0011 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 6.6832 L22: 7.3026 REMARK 3 L33: 4.9520 L12: 3.2835 REMARK 3 L13: 3.7294 L23: 5.1743 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.2382 S13: 0.2243 REMARK 3 S21: -0.3975 S22: -0.0940 S23: 0.5013 REMARK 3 S31: -0.4264 S32: -0.7801 S33: 0.1433 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4047 9.4886 30.9845 REMARK 3 T TENSOR REMARK 3 T11: 0.1072 T22: 0.1012 REMARK 3 T33: 0.1093 T12: -0.0285 REMARK 3 T13: 0.0082 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.8585 L22: 3.0167 REMARK 3 L33: 2.4578 L12: 0.0300 REMARK 3 L13: -0.7804 L23: -0.5999 REMARK 3 S TENSOR REMARK 3 S11: -0.0810 S12: -0.0329 S13: -0.1487 REMARK 3 S21: 0.0207 S22: 0.0274 S23: 0.1622 REMARK 3 S31: 0.2159 S32: -0.1153 S33: 0.0569 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9668 8.7903 22.9715 REMARK 3 T TENSOR REMARK 3 T11: 0.2139 T22: 0.2104 REMARK 3 T33: 0.2179 T12: -0.0766 REMARK 3 T13: -0.0117 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.8221 L22: 6.3916 REMARK 3 L33: 4.4341 L12: -2.3979 REMARK 3 L13: -3.7262 L23: 0.3550 REMARK 3 S TENSOR REMARK 3 S11: -0.3232 S12: 0.5872 S13: -0.0839 REMARK 3 S21: -0.3012 S22: 0.2410 S23: 0.2988 REMARK 3 S31: 0.2340 S32: -0.5715 S33: 0.0798 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1973 9.9330 10.2278 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.1757 REMARK 3 T33: 0.2487 T12: -0.0501 REMARK 3 T13: -0.0071 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 5.2834 L22: 2.6747 REMARK 3 L33: 3.9621 L12: -0.7661 REMARK 3 L13: 0.8947 L23: 1.1423 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.0311 S13: -0.0882 REMARK 3 S21: -0.0894 S22: -0.1056 S23: 0.4384 REMARK 3 S31: 0.0840 S32: -0.5300 S33: 0.0958 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7251 2.5821 26.0063 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.1484 REMARK 3 T33: 0.1617 T12: 0.0163 REMARK 3 T13: 0.0013 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2170 L22: 2.1721 REMARK 3 L33: 2.5476 L12: -0.7725 REMARK 3 L13: 0.7816 L23: -1.9788 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.0875 S13: -0.0339 REMARK 3 S21: 0.0161 S22: 0.0511 S23: -0.0102 REMARK 3 S31: 0.4044 S32: 0.0297 S33: -0.0761 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3599 15.9396 43.0119 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.1690 REMARK 3 T33: 0.1589 T12: -0.0055 REMARK 3 T13: 0.0046 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 5.7617 L22: 4.2258 REMARK 3 L33: 6.0455 L12: -4.7766 REMARK 3 L13: -2.3018 L23: 1.2334 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.4590 S13: -0.0756 REMARK 3 S21: 0.3765 S22: 0.1120 S23: 0.0356 REMARK 3 S31: 0.1481 S32: -0.0452 S33: -0.0347 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0894 23.3024 16.0796 REMARK 3 T TENSOR REMARK 3 T11: 0.1653 T22: 0.1447 REMARK 3 T33: 0.1591 T12: -0.0197 REMARK 3 T13: 0.0069 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 6.4530 L22: 4.3494 REMARK 3 L33: 2.2476 L12: -0.2319 REMARK 3 L13: 0.7735 L23: -0.6817 REMARK 3 S TENSOR REMARK 3 S11: -0.1294 S12: -0.4610 S13: 0.0516 REMARK 3 S21: 0.2875 S22: 0.1071 S23: -0.4209 REMARK 3 S31: -0.3060 S32: 0.1257 S33: 0.1026 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0978 19.2233 19.0446 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1812 REMARK 3 T33: 0.1143 T12: 0.0055 REMARK 3 T13: -0.0018 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2433 L22: 5.1077 REMARK 3 L33: 2.8604 L12: -0.2153 REMARK 3 L13: -1.3896 L23: -1.4635 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.3535 S13: -0.0325 REMARK 3 S21: 0.3411 S22: -0.0322 S23: -0.3207 REMARK 3 S31: -0.0946 S32: 0.2470 S33: 0.0608 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5107 30.8372 11.6784 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.1074 REMARK 3 T33: 0.1621 T12: 0.0202 REMARK 3 T13: -0.0037 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 5.6517 L22: 2.8782 REMARK 3 L33: 6.6774 L12: 1.2195 REMARK 3 L13: 2.4354 L23: 2.7663 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.1905 S13: 0.3868 REMARK 3 S21: -0.1043 S22: 0.0899 S23: -0.0984 REMARK 3 S31: -0.4295 S32: 0.0157 S33: -0.0117 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5739 25.3583 8.2541 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1312 REMARK 3 T33: 0.1842 T12: -0.0208 REMARK 3 T13: 0.0155 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.3532 L22: 2.2970 REMARK 3 L33: 1.7092 L12: -0.0036 REMARK 3 L13: -0.6278 L23: 0.1516 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.1658 S13: 0.2225 REMARK 3 S21: -0.1232 S22: -0.0153 S23: -0.2659 REMARK 3 S31: -0.2176 S32: 0.0967 S33: 0.0466 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5478 23.9551 6.8021 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.1967 REMARK 3 T33: 0.2288 T12: -0.0372 REMARK 3 T13: 0.0240 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 5.2590 L22: 9.0148 REMARK 3 L33: 8.3942 L12: -6.0899 REMARK 3 L13: 5.8095 L23: -5.2989 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.0779 S13: 0.1937 REMARK 3 S21: -0.1536 S22: -0.1570 S23: -0.4908 REMARK 3 S31: -0.0322 S32: 0.4649 S33: 0.0780 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9906 15.9246 4.8705 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.1148 REMARK 3 T33: 0.1472 T12: 0.0217 REMARK 3 T13: 0.0349 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.9740 L22: 2.0140 REMARK 3 L33: 3.1225 L12: 1.5170 REMARK 3 L13: -0.7193 L23: 1.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.0705 S12: -0.0106 S13: -0.1329 REMARK 3 S21: -0.1418 S22: 0.0160 S23: -0.1716 REMARK 3 S31: 0.1524 S32: 0.0770 S33: 0.0364 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8162 11.2183 0.4208 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1527 REMARK 3 T33: 0.1841 T12: 0.0372 REMARK 3 T13: 0.0514 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 4.4884 L22: 6.0213 REMARK 3 L33: 2.6581 L12: -1.0056 REMARK 3 L13: -0.3948 L23: 0.9201 REMARK 3 S TENSOR REMARK 3 S11: -0.1518 S12: 0.1669 S13: -0.5420 REMARK 3 S21: -0.2212 S22: 0.0276 S23: -0.7039 REMARK 3 S31: 0.1788 S32: 0.2493 S33: 0.1214 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5294 8.4192 1.3948 REMARK 3 T TENSOR REMARK 3 T11: 0.2023 T22: 0.1041 REMARK 3 T33: 0.2180 T12: 0.0176 REMARK 3 T13: 0.0422 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 4.6229 L22: 1.7062 REMARK 3 L33: 1.8659 L12: 0.0389 REMARK 3 L13: -1.3142 L23: 0.1997 REMARK 3 S TENSOR REMARK 3 S11: -0.1170 S12: 0.1199 S13: -0.3850 REMARK 3 S21: -0.1107 S22: 0.0242 S23: -0.2018 REMARK 3 S31: 0.2824 S32: 0.0446 S33: 0.0595 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5885 9.0596 15.5278 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1921 REMARK 3 T33: 0.1939 T12: 0.0195 REMARK 3 T13: 0.0303 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 9.0360 L22: 3.1985 REMARK 3 L33: 3.9470 L12: -0.2518 REMARK 3 L13: 5.6646 L23: -0.9765 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: -0.0923 S13: -0.0492 REMARK 3 S21: -0.1362 S22: -0.0661 S23: -0.3460 REMARK 3 S31: 0.0572 S32: 0.1412 S33: 0.0878 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 167 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7209 6.0082 26.3362 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.2152 REMARK 3 T33: 0.2188 T12: 0.0303 REMARK 3 T13: -0.0200 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 6.2538 L22: 1.3584 REMARK 3 L33: 1.9698 L12: 1.3321 REMARK 3 L13: -2.3674 L23: -1.5831 REMARK 3 S TENSOR REMARK 3 S11: 0.2142 S12: -0.3148 S13: 0.1795 REMARK 3 S21: 0.1752 S22: -0.2659 S23: -0.3957 REMARK 3 S31: -0.0100 S32: 0.4200 S33: 0.0769 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5366 5.1472 4.0577 REMARK 3 T TENSOR REMARK 3 T11: 0.2186 T22: 0.1467 REMARK 3 T33: 0.1738 T12: -0.0237 REMARK 3 T13: -0.0100 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.3898 L22: 1.7375 REMARK 3 L33: 8.8674 L12: 0.2012 REMARK 3 L13: 0.4915 L23: -1.0951 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.1212 S13: -0.0598 REMARK 3 S21: -0.4155 S22: 0.0296 S23: 0.0361 REMARK 3 S31: 0.5768 S32: -0.3085 S33: -0.0292 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5803 20.2076 -10.1538 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.2131 REMARK 3 T33: 0.1237 T12: -0.0299 REMARK 3 T13: 0.0309 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.7460 L22: 9.6660 REMARK 3 L33: 5.8976 L12: 5.7479 REMARK 3 L13: 0.4144 L23: -0.4294 REMARK 3 S TENSOR REMARK 3 S11: -0.3329 S12: 0.6371 S13: 0.2309 REMARK 3 S21: -0.5794 S22: 0.3212 S23: 0.1876 REMARK 3 S31: -0.2093 S32: -0.0299 S33: 0.0170 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UND COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.PRIME REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 53.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 58.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.16_3549 REMARK 200 STARTING MODEL: 3NON REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% PEG 3350, 250 MM MGCL2, 125 MM REMARK 280 TRIS-HCL, 2 MM DTT, PH 8.8, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.71200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 228 REMARK 465 GLY B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 12 O HOH B 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 205 NE2 GLN B 52 2646 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 101 -136.21 59.29 REMARK 500 ILE A 152 -79.59 4.47 REMARK 500 PHE A 167 -100.43 -120.80 REMARK 500 CYS B 101 -138.63 58.33 REMARK 500 ILE B 152 -78.93 8.37 REMARK 500 PHE B 167 -102.30 -123.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QCV A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide QCV B 301 and CYS B REMARK 800 101 DBREF 6UND A 1 228 UNP Q4K977 Q4K977_PSEF5 1 228 DBREF 6UND B 1 228 UNP Q4K977 Q4K977_PSEF5 1 228 SEQADV 6UND GLY A -2 UNP Q4K977 EXPRESSION TAG SEQADV 6UND SER A -1 UNP Q4K977 EXPRESSION TAG SEQADV 6UND HIS A 0 UNP Q4K977 EXPRESSION TAG SEQADV 6UND GLY B -2 UNP Q4K977 EXPRESSION TAG SEQADV 6UND SER B -1 UNP Q4K977 EXPRESSION TAG SEQADV 6UND HIS B 0 UNP Q4K977 EXPRESSION TAG SEQRES 1 A 231 GLY SER HIS MET ALA VAL GLN ILE GLY PHE LEU LEU PHE SEQRES 2 A 231 PRO GLU VAL GLN GLN LEU ASP LEU THR GLY PRO HIS ASP SEQRES 3 A 231 VAL LEU ALA SER LEU PRO ASP VAL GLN VAL HIS LEU ILE SEQRES 4 A 231 TRP LYS GLU PRO GLY PRO VAL VAL ALA SER SER GLY LEU SEQRES 5 A 231 VAL LEU GLN ALA THR THR SER PHE ALA ASP CYS PRO PRO SEQRES 6 A 231 LEU ASP VAL ILE CYS ILE PRO GLY GLY THR GLY VAL GLY SEQRES 7 A 231 ALA LEU MET GLU ASP PRO GLN ALA LEU ALA PHE ILE ARG SEQRES 8 A 231 GLN GLN ALA ALA ARG ALA ARG TYR VAL THR SER VAL CYS SEQRES 9 A 231 THR GLY SER LEU VAL LEU GLY ALA ALA GLY LEU LEU GLN SEQRES 10 A 231 GLY LYS ARG ALA THR THR HIS TRP ALA TYR HIS GLU LEU SEQRES 11 A 231 LEU ALA PRO LEU GLY ALA ILE PRO VAL HIS GLU ARG VAL SEQRES 12 A 231 VAL ARG ASP GLY ASN LEU LEU THR GLY GLY GLY ILE THR SEQRES 13 A 231 ALA GLY ILE ASP PHE ALA LEU THR LEU ALA ALA GLU LEU SEQRES 14 A 231 PHE ASP ALA ALA THR ALA GLN ARG VAL GLN LEU GLN LEU SEQRES 15 A 231 GLU TYR ALA PRO ALA PRO PRO PHE ASN ALA GLY SER PRO SEQRES 16 A 231 ASP THR ALA PRO ALA SER VAL VAL GLN GLN ALA ARG GLN SEQRES 17 A 231 ARG ALA ALA ASP SER LEU HIS LYS ARG ARG GLU ILE THR SEQRES 18 A 231 LEU ARG ALA ALA ALA ARG LEU ALA ALA GLY SEQRES 1 B 231 GLY SER HIS MET ALA VAL GLN ILE GLY PHE LEU LEU PHE SEQRES 2 B 231 PRO GLU VAL GLN GLN LEU ASP LEU THR GLY PRO HIS ASP SEQRES 3 B 231 VAL LEU ALA SER LEU PRO ASP VAL GLN VAL HIS LEU ILE SEQRES 4 B 231 TRP LYS GLU PRO GLY PRO VAL VAL ALA SER SER GLY LEU SEQRES 5 B 231 VAL LEU GLN ALA THR THR SER PHE ALA ASP CYS PRO PRO SEQRES 6 B 231 LEU ASP VAL ILE CYS ILE PRO GLY GLY THR GLY VAL GLY SEQRES 7 B 231 ALA LEU MET GLU ASP PRO GLN ALA LEU ALA PHE ILE ARG SEQRES 8 B 231 GLN GLN ALA ALA ARG ALA ARG TYR VAL THR SER VAL CYS SEQRES 9 B 231 THR GLY SER LEU VAL LEU GLY ALA ALA GLY LEU LEU GLN SEQRES 10 B 231 GLY LYS ARG ALA THR THR HIS TRP ALA TYR HIS GLU LEU SEQRES 11 B 231 LEU ALA PRO LEU GLY ALA ILE PRO VAL HIS GLU ARG VAL SEQRES 12 B 231 VAL ARG ASP GLY ASN LEU LEU THR GLY GLY GLY ILE THR SEQRES 13 B 231 ALA GLY ILE ASP PHE ALA LEU THR LEU ALA ALA GLU LEU SEQRES 14 B 231 PHE ASP ALA ALA THR ALA GLN ARG VAL GLN LEU GLN LEU SEQRES 15 B 231 GLU TYR ALA PRO ALA PRO PRO PHE ASN ALA GLY SER PRO SEQRES 16 B 231 ASP THR ALA PRO ALA SER VAL VAL GLN GLN ALA ARG GLN SEQRES 17 B 231 ARG ALA ALA ASP SER LEU HIS LYS ARG ARG GLU ILE THR SEQRES 18 B 231 LEU ARG ALA ALA ALA ARG LEU ALA ALA GLY HET QCV A 301 15 HET QCV B 301 15 HETNAM QCV N-(4-NITROPHENYL)METHANIMINE FORMUL 3 QCV 2(C7 H6 N2 O2) FORMUL 5 HOH *269(H2 O) HELIX 1 AA1 GLN A 14 ALA A 26 1 13 HELIX 2 AA2 GLY A 73 MET A 78 1 6 HELIX 3 AA3 ASP A 80 ALA A 94 1 15 HELIX 4 AA4 THR A 102 ALA A 110 1 9 HELIX 5 AA5 HIS A 121 GLY A 132 5 12 HELIX 6 AA6 THR A 153 PHE A 167 1 15 HELIX 7 AA7 ASP A 168 LEU A 179 1 12 HELIX 8 AA8 PRO A 196 ALA A 227 1 32 HELIX 9 AA9 GLN B 14 SER B 27 1 14 HELIX 10 AB1 GLY B 73 MET B 78 1 6 HELIX 11 AB2 ASP B 80 ALA B 94 1 15 HELIX 12 AB3 THR B 102 ALA B 110 1 9 HELIX 13 AB4 HIS B 121 GLY B 132 5 12 HELIX 14 AB5 THR B 153 PHE B 167 1 15 HELIX 15 AB6 ASP B 168 LEU B 179 1 12 HELIX 16 AB7 PRO B 196 ALA B 226 1 31 SHEET 1 AA1 7 THR A 55 SER A 56 0 SHEET 2 AA1 7 VAL A 31 TRP A 37 1 N TRP A 37 O THR A 55 SHEET 3 AA1 7 VAL A 3 LEU A 8 1 N PHE A 7 O ILE A 36 SHEET 4 AA1 7 VAL A 65 ILE A 68 1 O VAL A 65 N GLY A 6 SHEET 5 AA1 7 TYR A 96 VAL A 100 1 O THR A 98 N ILE A 66 SHEET 6 AA1 7 LEU A 146 GLY A 149 1 O LEU A 147 N VAL A 97 SHEET 7 AA1 7 VAL A 140 ASP A 143 -1 N VAL A 141 O THR A 148 SHEET 1 AA2 2 GLY A 41 VAL A 44 0 SHEET 2 AA2 2 VAL A 50 ALA A 53 -1 O LEU A 51 N VAL A 43 SHEET 1 AA3 2 ARG A 117 ALA A 118 0 SHEET 2 AA3 2 ILE A 134 PRO A 135 1 O ILE A 134 N ALA A 118 SHEET 1 AA4 7 THR B 55 SER B 56 0 SHEET 2 AA4 7 VAL B 31 TRP B 37 1 N TRP B 37 O THR B 55 SHEET 3 AA4 7 VAL B 3 LEU B 8 1 N PHE B 7 O ILE B 36 SHEET 4 AA4 7 VAL B 65 ILE B 68 1 O VAL B 65 N GLY B 6 SHEET 5 AA4 7 TYR B 96 VAL B 100 1 O THR B 98 N ILE B 66 SHEET 6 AA4 7 LEU B 146 GLY B 149 1 O LEU B 147 N VAL B 97 SHEET 7 AA4 7 VAL B 140 ASP B 143 -1 N VAL B 141 O THR B 148 SHEET 1 AA5 2 GLY B 41 VAL B 44 0 SHEET 2 AA5 2 VAL B 50 ALA B 53 -1 O LEU B 51 N VAL B 43 SHEET 1 AA6 2 ARG B 117 ALA B 118 0 SHEET 2 AA6 2 ILE B 134 PRO B 135 1 O ILE B 134 N ALA B 118 LINK SG CYS A 101 C1 QCV A 301 1555 1555 1.90 LINK SG CYS B 101 C1 QCV B 301 1555 1555 1.90 SITE 1 AC1 8 GLN A 14 ASP A 17 GLY A 71 CYS A 101 SITE 2 AC1 8 HIS A 121 TYR A 124 ILE A 152 GLN B 178 SITE 1 AC2 15 GLN A 178 GLN B 14 ASP B 17 GLY B 71 SITE 2 AC2 15 VAL B 100 THR B 102 GLY B 103 SER B 104 SITE 3 AC2 15 THR B 120 HIS B 121 TYR B 124 GLY B 149 SITE 4 AC2 15 GLY B 150 ILE B 152 HOH B 444 CRYST1 56.766 57.424 68.790 90.00 112.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017616 0.000000 0.007383 0.00000 SCALE2 0.000000 0.017414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015762 0.00000