HEADER HYDROLASE/HYDROLASE INHIBITOR 14-OCT-19 6UOC TITLE CRYSTAL STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 CATALYTIC TITLE 2 DOMAIN 1 (CD1) K330L MUTANT COMPLEXED WITH GIVINOSTAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE DEACETYLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.OSKO,D.W.CHRISTIANSON REVDAT 3 11-OCT-23 6UOC 1 LINK REVDAT 2 18-DEC-19 6UOC 1 JRNL REVDAT 1 04-DEC-19 6UOC 0 JRNL AUTH J.D.OSKO,D.W.CHRISTIANSON JRNL TITL STRUCTURAL BASIS OF CATALYSIS AND INHIBITION OF HDAC6 CD1, JRNL TITL 2 THE ENIGMATIC CATALYTIC DOMAIN OF HISTONE DEACETYLASE 6. JRNL REF BIOCHEMISTRY V. 58 4912 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31755702 JRNL DOI 10.1021/ACS.BIOCHEM.9B00934 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.338 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 80865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.003 REMARK 3 FREE R VALUE TEST SET COUNT : 4046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9476 - 4.2999 1.00 2871 151 0.1496 0.1491 REMARK 3 2 4.2999 - 3.4134 1.00 2721 159 0.1371 0.1490 REMARK 3 3 3.4134 - 2.9820 1.00 2746 127 0.1564 0.1613 REMARK 3 4 2.9820 - 2.7094 1.00 2698 147 0.1611 0.1772 REMARK 3 5 2.7094 - 2.5153 1.00 2671 144 0.1581 0.1782 REMARK 3 6 2.5153 - 2.3670 1.00 2690 154 0.1572 0.1725 REMARK 3 7 2.3670 - 2.2484 0.99 2616 146 0.1576 0.1875 REMARK 3 8 2.2484 - 2.1506 1.00 2652 145 0.1522 0.1593 REMARK 3 9 2.1506 - 2.0678 1.00 2655 137 0.1533 0.1776 REMARK 3 10 2.0678 - 1.9964 1.00 2649 123 0.1548 0.1671 REMARK 3 11 1.9964 - 1.9340 1.00 2639 134 0.1550 0.1898 REMARK 3 12 1.9340 - 1.8787 1.00 2645 140 0.1524 0.1734 REMARK 3 13 1.8787 - 1.8293 1.00 2637 131 0.1515 0.1621 REMARK 3 14 1.8293 - 1.7846 1.00 2643 135 0.1474 0.1794 REMARK 3 15 1.7846 - 1.7441 1.00 2648 144 0.1490 0.1695 REMARK 3 16 1.7441 - 1.7069 1.00 2631 121 0.1445 0.1685 REMARK 3 17 1.7069 - 1.6728 1.00 2607 131 0.1424 0.1762 REMARK 3 18 1.6728 - 1.6412 1.00 2658 139 0.1447 0.1660 REMARK 3 19 1.6412 - 1.6119 1.00 2637 124 0.1454 0.1688 REMARK 3 20 1.6119 - 1.5846 0.99 2614 147 0.1378 0.1705 REMARK 3 21 1.5846 - 1.5590 0.99 2619 153 0.1462 0.1672 REMARK 3 22 1.5590 - 1.5350 0.99 2568 149 0.1494 0.1689 REMARK 3 23 1.5350 - 1.5125 0.99 2626 131 0.1503 0.1689 REMARK 3 24 1.5125 - 1.4912 0.99 2593 140 0.1511 0.1706 REMARK 3 25 1.4912 - 1.4710 1.00 2645 130 0.1579 0.1726 REMARK 3 26 1.4710 - 1.4519 1.00 2622 143 0.1616 0.1965 REMARK 3 27 1.4519 - 1.4338 1.00 2599 139 0.1675 0.1908 REMARK 3 28 1.4338 - 1.4165 1.00 2606 120 0.1659 0.1999 REMARK 3 29 1.4165 - 1.4000 1.00 2613 162 0.1656 0.1966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.096 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3010 REMARK 3 ANGLE : 0.841 4110 REMARK 3 CHIRALITY : 0.078 446 REMARK 3 PLANARITY : 0.006 540 REMARK 3 DIHEDRAL : 20.944 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80865 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.948 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EEF REMARK 200 REMARK 200 REMARK: THIN/THICK PLATE-LIKE SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML HDAC6 CD1 2 MM INHIBITOR 0.2 REMARK 280 M MAGNESIUM FORMATE DIHYDRATE 20% PEG 3350 1:1 RATIO PROTEIN TO REMARK 280 PRECIPITANT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.08000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.08000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.58000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 54 REMARK 465 ASN A 55 REMARK 465 ALA A 56 REMARK 465 GLY A 57 REMARK 465 GLY A 58 REMARK 465 SER A 59 REMARK 465 PHE A 418 REMARK 465 GLU A 419 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 61 OG1 CG2 REMARK 470 GLU A 109 OE1 OE2 REMARK 470 LYS A 124 CE NZ REMARK 470 GLU A 139 CD OE1 OE2 REMARK 470 LYS A 198 NZ REMARK 470 LYS A 265 CE NZ REMARK 470 GLU A 395 CD OE1 OE2 REMARK 470 LYS A 413 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 73 33.54 -92.33 REMARK 500 VAL A 121 -40.22 -130.76 REMARK 500 TYR A 255 -55.39 -135.65 REMARK 500 LEU A 303 -59.65 -124.88 REMARK 500 GLU A 360 -112.99 -111.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1131 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1132 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 605 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 228 O REMARK 620 2 ASP A 228 OD1 69.8 REMARK 620 3 ASP A 230 O 101.8 96.3 REMARK 620 4 HIS A 232 O 163.3 93.4 79.6 REMARK 620 5 SER A 251 OG 88.5 109.9 153.8 97.4 REMARK 620 6 VAL A 252 O 78.8 141.1 67.6 116.5 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 230 OD1 REMARK 620 2 HIS A 232 ND1 102.4 REMARK 620 3 ASP A 323 OD2 105.1 97.1 REMARK 620 4 QCM A 607 N30 115.2 81.0 139.2 REMARK 620 5 QCM A 607 O01 164.8 88.2 84.1 55.2 REMARK 620 6 QCM A 607 O31 89.5 105.9 149.5 32.4 77.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 606 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 241 O REMARK 620 2 ASP A 244 O 76.6 REMARK 620 3 VAL A 247 O 122.0 74.4 REMARK 620 4 TYR A 280 O 152.4 119.7 85.1 REMARK 620 5 HOH A 825 O 69.6 146.0 121.3 92.9 REMARK 620 6 HOH A 829 O 78.1 94.0 152.0 78.6 82.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QCM A 607 DBREF 6UOC A 60 419 UNP F8W4B7 F8W4B7_DANRE 60 419 SEQADV 6UOC SER A 54 UNP F8W4B7 EXPRESSION TAG SEQADV 6UOC ASN A 55 UNP F8W4B7 EXPRESSION TAG SEQADV 6UOC ALA A 56 UNP F8W4B7 EXPRESSION TAG SEQADV 6UOC GLY A 57 UNP F8W4B7 EXPRESSION TAG SEQADV 6UOC GLY A 58 UNP F8W4B7 EXPRESSION TAG SEQADV 6UOC SER A 59 UNP F8W4B7 EXPRESSION TAG SEQADV 6UOC LEU A 330 UNP F8W4B7 LYS 330 ENGINEERED MUTATION SEQRES 1 A 366 SER ASN ALA GLY GLY SER ALA THR GLY THR GLY LEU VAL SEQRES 2 A 366 TYR VAL ASP ALA PHE THR ARG PHE HIS CYS LEU TRP ASP SEQRES 3 A 366 ALA SER HIS PRO GLU CYS PRO ALA ARG VAL SER THR VAL SEQRES 4 A 366 MET GLU MET LEU GLU THR GLU GLY LEU LEU GLY ARG CYS SEQRES 5 A 366 VAL GLN VAL GLU ALA ARG ALA VAL THR GLU ASP GLU LEU SEQRES 6 A 366 LEU LEU VAL HIS THR LYS GLU TYR VAL GLU LEU MET LYS SEQRES 7 A 366 SER THR GLN ASN MET THR GLU GLU GLU LEU LYS THR LEU SEQRES 8 A 366 ALA GLU LYS TYR ASP SER VAL TYR LEU HIS PRO GLY PHE SEQRES 9 A 366 PHE SER SER ALA CYS LEU SER VAL GLY SER VAL LEU GLN SEQRES 10 A 366 LEU VAL ASP LYS VAL MET THR SER GLN LEU ARG ASN GLY SEQRES 11 A 366 PHE SER ILE ASN ARG PRO PRO GLY HIS HIS ALA GLN ALA SEQRES 12 A 366 ASP LYS MET ASN GLY PHE CYS MET PHE ASN ASN LEU ALA SEQRES 13 A 366 ILE ALA ALA ARG TYR ALA GLN LYS ARG HIS ARG VAL GLN SEQRES 14 A 366 ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS GLY GLN SEQRES 15 A 366 GLY ILE GLN TYR ILE PHE GLU GLU ASP PRO SER VAL LEU SEQRES 16 A 366 TYR PHE SER VAL HIS ARG TYR GLU ASP GLY SER PHE TRP SEQRES 17 A 366 PRO HIS LEU LYS GLU SER ASP SER SER SER VAL GLY SER SEQRES 18 A 366 GLY ALA GLY GLN GLY TYR ASN ILE ASN LEU PRO TRP ASN SEQRES 19 A 366 LYS VAL GLY MET GLU SER GLY ASP TYR ILE THR ALA PHE SEQRES 20 A 366 GLN GLN LEU LEU LEU PRO VAL ALA TYR GLU PHE GLN PRO SEQRES 21 A 366 GLN LEU VAL LEU VAL ALA ALA GLY PHE ASP ALA VAL ILE SEQRES 22 A 366 GLY ASP PRO LEU GLY GLY MET GLN VAL SER PRO GLU CYS SEQRES 23 A 366 PHE SER ILE LEU THR HIS MET LEU LYS GLY VAL ALA GLN SEQRES 24 A 366 GLY ARG LEU VAL LEU ALA LEU GLU GLY GLY TYR ASN LEU SEQRES 25 A 366 GLN SER THR ALA GLU GLY VAL CYS ALA SER MET ARG SER SEQRES 26 A 366 LEU LEU GLY ASP PRO CYS PRO HIS LEU PRO SER SER GLY SEQRES 27 A 366 ALA PRO CYS GLU SER ALA LEU LYS SER ILE SER LYS THR SEQRES 28 A 366 ILE SER ASP LEU TYR PRO PHE TRP LYS SER LEU GLN THR SEQRES 29 A 366 PHE GLU HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET ZN A 604 1 HET K A 605 1 HET K A 606 1 HET QCM A 607 58 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM QCM GIVINOSTAT HETSYN EDO ETHYLENE GLYCOL HETSYN QCM {6-[(DIETHYLAMINO)METHYL]NAPHTHALEN-2-YL}METHYL [4- HETSYN 2 QCM (HYDROXYCARBAMOYL)PHENYL]CARBAMATE FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 ZN ZN 2+ FORMUL 6 K 2(K 1+) FORMUL 8 QCM C24 H27 N3 O4 FORMUL 9 HOH *432(H2 O) HELIX 1 AA1 VAL A 68 ARG A 73 5 6 HELIX 2 AA2 PRO A 86 GLU A 99 1 14 HELIX 3 AA3 LEU A 101 CYS A 105 5 5 HELIX 4 AA4 THR A 114 LEU A 119 1 6 HELIX 5 AA5 THR A 123 THR A 133 1 11 HELIX 6 AA6 GLN A 134 MET A 136 5 3 HELIX 7 AA7 THR A 137 GLU A 146 1 10 HELIX 8 AA8 GLY A 156 THR A 177 1 22 HELIX 9 AA9 ASN A 206 ARG A 218 1 13 HELIX 10 AB1 GLY A 234 GLU A 242 1 9 HELIX 11 AB2 GLU A 256 SER A 259 5 4 HELIX 12 AB3 LEU A 264 ASP A 268 5 5 HELIX 13 AB4 SER A 274 GLN A 278 5 5 HELIX 14 AB5 GLU A 292 LEU A 303 1 12 HELIX 15 AB6 LEU A 303 GLN A 312 1 10 HELIX 16 AB7 GLU A 338 LYS A 348 1 11 HELIX 17 AB8 VAL A 350 GLY A 353 5 4 HELIX 18 AB9 ASN A 364 LEU A 380 1 17 HELIX 19 AC1 CYS A 394 TYR A 409 1 16 HELIX 20 AC2 PRO A 410 GLN A 416 5 7 SHEET 1 AA1 8 VAL A 106 GLN A 107 0 SHEET 2 AA1 8 THR A 63 VAL A 66 1 N THR A 63 O VAL A 106 SHEET 3 AA1 8 ASN A 182 SER A 185 1 O ASN A 182 N GLY A 64 SHEET 4 AA1 8 LEU A 355 LEU A 359 1 O LEU A 357 N GLY A 183 SHEET 5 AA1 8 LEU A 315 ALA A 320 1 N VAL A 318 O VAL A 356 SHEET 6 AA1 8 VAL A 224 ASP A 228 1 N LEU A 225 O LEU A 317 SHEET 7 AA1 8 VAL A 247 ARG A 254 1 O LEU A 248 N ILE A 226 SHEET 8 AA1 8 ASN A 281 TRP A 286 1 O LEU A 284 N SER A 251 LINK O ASP A 228 K K A 605 1555 1555 2.87 LINK OD1 ASP A 228 K K A 605 1555 1555 2.74 LINK OD1 ASP A 230 ZN ZN A 604 1555 1555 2.04 LINK O ASP A 230 K K A 605 1555 1555 2.58 LINK ND1 HIS A 232 ZN ZN A 604 1555 1555 2.12 LINK O HIS A 232 K K A 605 1555 1555 2.72 LINK O PHE A 241 K K A 606 1555 1555 2.69 LINK O ASP A 244 K K A 606 1555 1555 2.93 LINK O VAL A 247 K K A 606 1555 1555 2.63 LINK OG SER A 251 K K A 605 1555 1555 2.76 LINK O VAL A 252 K K A 605 1555 1555 2.79 LINK O TYR A 280 K K A 606 1555 1555 2.86 LINK OD2 ASP A 323 ZN ZN A 604 1555 1555 2.04 LINK ZN ZN A 604 N30 QCM A 607 1555 1555 2.52 LINK ZN ZN A 604 O01 QCM A 607 1555 1555 2.32 LINK ZN ZN A 604 O31 QCM A 607 1555 1555 2.01 LINK K K A 606 O HOH A 825 1555 1555 2.99 LINK K K A 606 O HOH A 829 1555 1555 2.64 CISPEP 1 ARG A 188 PRO A 189 0 5.54 CISPEP 2 TRP A 261 PRO A 262 0 6.51 SITE 1 AC1 6 HIS A 345 LYS A 348 SER A 378 GLY A 381 SITE 2 AC1 6 ASP A 382 HOH A 940 SITE 1 AC2 2 SER A 150 HOH A 733 SITE 1 AC3 6 ILE A 326 GLY A 327 GLY A 332 MET A 333 SITE 2 AC3 6 GLN A 334 HOH A 709 SITE 1 AC4 4 ASP A 230 HIS A 232 ASP A 323 QCM A 607 SITE 1 AC5 5 ASP A 228 ASP A 230 HIS A 232 SER A 251 SITE 2 AC5 5 VAL A 252 SITE 1 AC6 6 PHE A 241 ASP A 244 VAL A 247 TYR A 280 SITE 2 AC6 6 HOH A 825 HOH A 829 SITE 1 AC7 14 GLU A 94 GLU A 97 SER A 150 HIS A 192 SITE 2 AC7 14 HIS A 193 PHE A 202 ASP A 230 HIS A 232 SITE 3 AC7 14 TRP A 261 ASP A 323 LEU A 330 TYR A 363 SITE 4 AC7 14 ZN A 604 HOH A 828 CRYST1 55.160 60.400 122.160 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008186 0.00000