HEADER CYTOSOLIC PROTEIN 29-OCT-19 6UTM TITLE NATIVE E. COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GAPA, ACN002_1253; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS G3P, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, E. COLI, CYTOSOLIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.RODRIGUEZ-HERNANDEZ,E.ROMO-AREVALO,A.RODRIGUEZ-ROMERO REVDAT 2 06-MAR-24 6UTM 1 LINK REVDAT 1 11-DEC-19 6UTM 0 JRNL AUTH A.RODRIGUEZ-HERNANDEZ,E.ROMO-AREVALO,A.RODRIGUEZ-ROMERO JRNL TITL A NOVEL SUBSTRATE-BINDING SITE IN THE X-RAY STRUCTURE OF AN JRNL TITL 2 OXIDIZED E. COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE JRNL TITL 3 ELUCIDATED BY SINGLE-WAVELENGTH ANOMALOUS DISPERSION JRNL REF CRYSTALS V. 9 622 2019 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST9120622 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.D.ADAMS,P.V.AFONINE,G.BUNKOCZI,V.B.CHEN,I.W.DAVIS, REMARK 1 AUTH 2 N.ECHOLS,J.J.HEADD,L.W.HUNG,G.J.KAPRAL,R.W.GROSSE-KUNSTLEVE, REMARK 1 AUTH 3 A.J.MCCOY,N.W.MORIARTY,R.OEFFNER,R.J.READ,D.C.RICHARDSON, REMARK 1 AUTH 4 J.S.RICHARDSON,T.C.TERWILLIGER,P.H.ZWART REMARK 1 TITL PHENIX: A COMPREHENSIVE PYTHON-BASED SYSTEM FOR REMARK 1 TITL 2 MACROMOLECULAR STRUCTURE SOLUTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 213 2010 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 20124702 REMARK 1 DOI 10.1107/S0907444909052925 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 48546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.060 REMARK 3 FREE R VALUE TEST SET COUNT : 998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.8900 - 4.0900 0.99 7155 149 0.1465 0.1763 REMARK 3 2 4.0900 - 3.2500 1.00 6925 146 0.1376 0.1861 REMARK 3 3 3.2500 - 2.8300 1.00 6883 144 0.1685 0.1880 REMARK 3 4 2.8300 - 2.5800 0.99 6866 145 0.1810 0.2104 REMARK 3 5 2.5800 - 2.3900 1.00 6853 143 0.1859 0.2561 REMARK 3 6 2.3900 - 2.2500 0.99 6768 143 0.1854 0.2183 REMARK 3 7 2.2500 - 2.1400 0.89 6098 128 0.2004 0.2699 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.187 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5101 REMARK 3 ANGLE : 1.034 6937 REMARK 3 CHIRALITY : 0.063 820 REMARK 3 PLANARITY : 0.007 900 REMARK 3 DIHEDRAL : 6.150 4085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 69 OR REMARK 3 (RESID 70 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 72 REMARK 3 THROUGH 102 OR (RESID 103 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 104 THROUGH 124 OR RESID 126 REMARK 3 THROUGH 206 OR RESID 213 THROUGH 230 OR REMARK 3 RESID 232 THROUGH 285 OR RESID 287 REMARK 3 THROUGH 330 OR RESID 401)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 1 THROUGH 26 OR REMARK 3 (RESID 27 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 28 REMARK 3 THROUGH 44 OR (RESID 45 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 46 THROUGH 57 OR (RESID 58 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 59 OR (RESID 60 REMARK 3 THROUGH 61 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 62 REMARK 3 THROUGH 70 OR RESID 72 THROUGH 113 OR REMARK 3 (RESID 114 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 115 REMARK 3 THROUGH 124 OR RESID 126 THROUGH 190 OR REMARK 3 (RESID 191 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 192 REMARK 3 THROUGH 206 OR RESID 213 THROUGH 230 OR REMARK 3 RESID 232 THROUGH 285 OR RESID 287 REMARK 3 THROUGH 329 OR (RESID 330 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 801)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000245177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 46.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.5 MG/ ML PROTEIN, 0.1 M HEPES PH 7.5 REMARK 280 AND 1.43 M SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.87550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.87550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.95600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.48300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.95600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.48300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.87550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.95600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.48300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.87550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.95600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.48300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 182.62650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 LYS B 248 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 119 42.97 -92.36 REMARK 500 ASP A 124 -151.91 -116.44 REMARK 500 ASN A 134 26.21 -152.91 REMARK 500 ALA A 139 42.28 -140.73 REMARK 500 ALA A 147 -140.40 60.73 REMARK 500 SER A 189 72.13 -153.42 REMARK 500 ASP A 192 85.57 -157.97 REMARK 500 ALA A 213 -32.48 -145.36 REMARK 500 ALA A 213 -32.48 -37.93 REMARK 500 VAL A 237 130.03 83.98 REMARK 500 VAL A 270 -61.58 -108.67 REMARK 500 ALA B 75 53.35 -140.29 REMARK 500 THR B 119 43.61 -90.30 REMARK 500 ASP B 124 -147.44 -113.28 REMARK 500 ASN B 134 25.03 -153.09 REMARK 500 ALA B 147 -139.98 60.68 REMARK 500 SER B 189 71.77 -152.18 REMARK 500 ASP B 192 85.94 -156.20 REMARK 500 LYS B 212 24.75 -74.32 REMARK 500 ALA B 213 -31.09 -30.86 REMARK 500 ALA B 213 -31.09 -155.70 REMARK 500 VAL B 237 130.85 81.32 REMARK 500 VAL B 270 -62.11 -103.34 REMARK 500 SER B 290 104.64 -160.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 20 O REMARK 620 2 ARG A 23 O 86.8 REMARK 620 3 ILE A 26 O 99.8 87.6 REMARK 620 4 HOH A 589 O 99.1 64.5 145.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 76 OE2 REMARK 620 2 HOH A 551 O 85.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 804 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 20 O REMARK 620 2 ARG B 23 O 87.1 REMARK 620 3 ILE B 26 O 105.3 89.7 REMARK 620 4 HOH B 938 O 95.6 81.7 157.0 REMARK 620 5 HOH B1046 O 164.4 77.3 76.4 80.9 REMARK 620 6 HOH B1061 O 122.9 125.8 118.2 54.1 67.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G3P B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 804 DBREF1 6UTM A 1 330 UNP A0A0U4BD45_ECOLX DBREF2 6UTM A A0A0U4BD45 5 334 DBREF1 6UTM B 1 330 UNP A0A0U4BD45_ECOLX DBREF2 6UTM B A0A0U4BD45 5 334 SEQRES 1 A 330 THR ILE LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 A 330 ARG ILE VAL PHE ARG ALA ALA GLN LYS ARG SER ASP ILE SEQRES 3 A 330 GLU ILE VAL ALA ILE ASN ASP LEU LEU ASP ALA ASP TYR SEQRES 4 A 330 MET ALA TYR MET LEU LYS TYR ASP SER THR HIS GLY ARG SEQRES 5 A 330 PHE ASP GLY THR VAL GLU VAL LYS ASP GLY HIS LEU ILE SEQRES 6 A 330 VAL ASN GLY LYS LYS ILE ARG VAL THR ALA GLU ARG ASP SEQRES 7 A 330 PRO ALA ASN LEU LYS TRP ASP GLU VAL GLY VAL ASP VAL SEQRES 8 A 330 VAL ALA GLU ALA THR GLY LEU PHE LEU THR ASP GLU THR SEQRES 9 A 330 ALA ARG LYS HIS ILE THR ALA GLY ALA LYS LYS VAL VAL SEQRES 10 A 330 MET THR GLY PRO SER LYS ASP ASN THR PRO MET PHE VAL SEQRES 11 A 330 LYS GLY ALA ASN PHE ASP LYS TYR ALA GLY GLN ASP ILE SEQRES 12 A 330 VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA PRO SEQRES 13 A 330 LEU ALA LYS VAL ILE ASN ASP ASN PHE GLY ILE ILE GLU SEQRES 14 A 330 GLY LEU MET THR THR VAL HIS ALA THR THR ALA THR GLN SEQRES 15 A 330 LYS THR VAL ASP GLY PRO SER HIS LYS ASP TRP ARG GLY SEQRES 16 A 330 GLY ARG GLY ALA SER GLN ASN ILE ILE PRO SER SER THR SEQRES 17 A 330 GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU PRO GLU LEU SEQRES 18 A 330 ASN GLY LYS LEU THR GLY MET ALA PHE ARG VAL PRO THR SEQRES 19 A 330 PRO ASN VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLU SEQRES 20 A 330 LYS ALA ALA THR TYR GLU GLN ILE LYS ALA ALA VAL LYS SEQRES 21 A 330 ALA ALA ALA GLU GLY GLU MET LYS GLY VAL LEU GLY TYR SEQRES 22 A 330 THR GLU ASP ASP VAL VAL SER THR ASP PHE ASN GLY GLU SEQRES 23 A 330 VAL CYS THR SER VAL PHE ASP ALA LYS ALA GLY ILE ALA SEQRES 24 A 330 LEU ASN ASP ASN PHE VAL LYS LEU VAL SER TRP TYR ASP SEQRES 25 A 330 ASN GLU THR GLY TYR SER ASN LYS VAL LEU ASP LEU ILE SEQRES 26 A 330 ALA HIS ILE SER LYS SEQRES 1 B 330 THR ILE LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 B 330 ARG ILE VAL PHE ARG ALA ALA GLN LYS ARG SER ASP ILE SEQRES 3 B 330 GLU ILE VAL ALA ILE ASN ASP LEU LEU ASP ALA ASP TYR SEQRES 4 B 330 MET ALA TYR MET LEU LYS TYR ASP SER THR HIS GLY ARG SEQRES 5 B 330 PHE ASP GLY THR VAL GLU VAL LYS ASP GLY HIS LEU ILE SEQRES 6 B 330 VAL ASN GLY LYS LYS ILE ARG VAL THR ALA GLU ARG ASP SEQRES 7 B 330 PRO ALA ASN LEU LYS TRP ASP GLU VAL GLY VAL ASP VAL SEQRES 8 B 330 VAL ALA GLU ALA THR GLY LEU PHE LEU THR ASP GLU THR SEQRES 9 B 330 ALA ARG LYS HIS ILE THR ALA GLY ALA LYS LYS VAL VAL SEQRES 10 B 330 MET THR GLY PRO SER LYS ASP ASN THR PRO MET PHE VAL SEQRES 11 B 330 LYS GLY ALA ASN PHE ASP LYS TYR ALA GLY GLN ASP ILE SEQRES 12 B 330 VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA PRO SEQRES 13 B 330 LEU ALA LYS VAL ILE ASN ASP ASN PHE GLY ILE ILE GLU SEQRES 14 B 330 GLY LEU MET THR THR VAL HIS ALA THR THR ALA THR GLN SEQRES 15 B 330 LYS THR VAL ASP GLY PRO SER HIS LYS ASP TRP ARG GLY SEQRES 16 B 330 GLY ARG GLY ALA SER GLN ASN ILE ILE PRO SER SER THR SEQRES 17 B 330 GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU PRO GLU LEU SEQRES 18 B 330 ASN GLY LYS LEU THR GLY MET ALA PHE ARG VAL PRO THR SEQRES 19 B 330 PRO ASN VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLU SEQRES 20 B 330 LYS ALA ALA THR TYR GLU GLN ILE LYS ALA ALA VAL LYS SEQRES 21 B 330 ALA ALA ALA GLU GLY GLU MET LYS GLY VAL LEU GLY TYR SEQRES 22 B 330 THR GLU ASP ASP VAL VAL SER THR ASP PHE ASN GLY GLU SEQRES 23 B 330 VAL CYS THR SER VAL PHE ASP ALA LYS ALA GLY ILE ALA SEQRES 24 B 330 LEU ASN ASP ASN PHE VAL LYS LEU VAL SER TRP TYR ASP SEQRES 25 B 330 ASN GLU THR GLY TYR SER ASN LYS VAL LEU ASP LEU ILE SEQRES 26 B 330 ALA HIS ILE SER LYS HET G3P A 401 10 HET NA A 402 1 HET NA A 403 1 HET G3P B 801 10 HET GOL B 802 6 HET GOL B 803 6 HET NA B 804 1 HETNAM G3P SN-GLYCEROL-3-PHOSPHATE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 G3P 2(C3 H9 O6 P) FORMUL 4 NA 3(NA 1+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 10 HOH *349(H2 O) HELIX 1 AA1 GLY A 10 LYS A 22 1 13 HELIX 2 AA2 ASP A 36 TYR A 46 1 11 HELIX 3 AA3 ASP A 78 LEU A 82 5 5 HELIX 4 AA4 LYS A 83 GLY A 88 5 6 HELIX 5 AA5 THR A 101 ARG A 106 1 6 HELIX 6 AA6 ARG A 106 ALA A 111 1 6 HELIX 7 AA7 ASN A 134 TYR A 138 5 5 HELIX 8 AA8 SER A 148 GLY A 166 1 19 HELIX 9 AA9 TRP A 193 ARG A 197 5 5 HELIX 10 AB1 ALA A 213 LEU A 218 1 6 HELIX 11 AB2 PRO A 219 ASN A 222 5 4 HELIX 12 AB3 THR A 251 GLY A 265 1 15 HELIX 13 AB4 VAL A 279 ASN A 284 5 6 HELIX 14 AB5 GLU A 314 LYS A 330 1 17 HELIX 15 AB6 GLY B 10 LYS B 22 1 13 HELIX 16 AB7 ASP B 36 TYR B 46 1 11 HELIX 17 AB8 ASP B 78 LEU B 82 5 5 HELIX 18 AB9 LYS B 83 GLY B 88 5 6 HELIX 19 AC1 THR B 101 ARG B 106 1 6 HELIX 20 AC2 ARG B 106 ALA B 111 1 6 HELIX 21 AC3 ASN B 134 TYR B 138 5 5 HELIX 22 AC4 SER B 148 GLY B 166 1 19 HELIX 23 AC5 TRP B 193 ARG B 197 5 5 HELIX 24 AC6 GLY B 198 ASN B 202 5 5 HELIX 25 AC7 GLY B 209 LEU B 218 1 10 HELIX 26 AC8 PRO B 219 ASN B 222 5 4 HELIX 27 AC9 THR B 251 GLY B 265 1 15 HELIX 28 AD1 VAL B 279 ASN B 284 5 6 HELIX 29 AD2 GLU B 314 LYS B 330 1 17 SHEET 1 AA1 8 VAL A 57 LYS A 60 0 SHEET 2 AA1 8 HIS A 63 VAL A 66 -1 O ILE A 65 N GLU A 58 SHEET 3 AA1 8 LYS A 69 THR A 74 -1 O ILE A 71 N LEU A 64 SHEET 4 AA1 8 ILE A 26 ASN A 32 1 N ILE A 31 O ARG A 72 SHEET 5 AA1 8 ILE A 2 ASN A 7 1 N ILE A 6 O ASN A 32 SHEET 6 AA1 8 VAL A 91 GLU A 94 1 O ALA A 93 N GLY A 5 SHEET 7 AA1 8 LYS A 115 MET A 118 1 O VAL A 117 N GLU A 94 SHEET 8 AA1 8 ILE A 143 SER A 145 1 O VAL A 144 N MET A 118 SHEET 1 AA2 7 ILE A 204 SER A 206 0 SHEET 2 AA2 7 LEU A 225 VAL A 232 -1 O ALA A 229 N SER A 206 SHEET 3 AA2 7 ILE A 167 ALA A 177 1 N HIS A 176 O PHE A 230 SHEET 4 AA2 7 SER A 238 LEU A 246 -1 O ASP A 241 N THR A 173 SHEET 5 AA2 7 PHE A 304 TYR A 311 -1 O SER A 309 N VAL A 240 SHEET 6 AA2 7 SER A 290 ASP A 293 -1 N ASP A 293 O VAL A 308 SHEET 7 AA2 7 LEU A 271 THR A 274 1 N GLY A 272 O SER A 290 SHEET 1 AA3 6 ILE A 204 SER A 206 0 SHEET 2 AA3 6 LEU A 225 VAL A 232 -1 O ALA A 229 N SER A 206 SHEET 3 AA3 6 ILE A 167 ALA A 177 1 N HIS A 176 O PHE A 230 SHEET 4 AA3 6 SER A 238 LEU A 246 -1 O ASP A 241 N THR A 173 SHEET 5 AA3 6 PHE A 304 TYR A 311 -1 O SER A 309 N VAL A 240 SHEET 6 AA3 6 ILE A 298 ASN A 301 -1 N ILE A 298 O LYS A 306 SHEET 1 AA4 8 VAL B 57 LYS B 60 0 SHEET 2 AA4 8 HIS B 63 VAL B 66 -1 O ILE B 65 N GLU B 58 SHEET 3 AA4 8 LYS B 69 THR B 74 -1 O ILE B 71 N LEU B 64 SHEET 4 AA4 8 ILE B 26 ASN B 32 1 N ILE B 31 O ARG B 72 SHEET 5 AA4 8 ILE B 2 ASN B 7 1 N VAL B 4 O GLU B 27 SHEET 6 AA4 8 VAL B 91 GLU B 94 1 O ALA B 93 N GLY B 5 SHEET 7 AA4 8 LYS B 115 MET B 118 1 O VAL B 117 N VAL B 92 SHEET 8 AA4 8 ILE B 143 SER B 145 1 O VAL B 144 N MET B 118 SHEET 1 AA5 7 ILE B 204 SER B 207 0 SHEET 2 AA5 7 LEU B 225 VAL B 232 -1 O ALA B 229 N SER B 206 SHEET 3 AA5 7 ILE B 167 ALA B 177 1 N HIS B 176 O PHE B 230 SHEET 4 AA5 7 SER B 238 LEU B 246 -1 O ASP B 241 N THR B 173 SHEET 5 AA5 7 PHE B 304 TYR B 311 -1 O LEU B 307 N LEU B 242 SHEET 6 AA5 7 SER B 290 ASP B 293 -1 N ASP B 293 O VAL B 308 SHEET 7 AA5 7 LEU B 271 THR B 274 1 N GLY B 272 O SER B 290 SHEET 1 AA6 6 ILE B 204 SER B 207 0 SHEET 2 AA6 6 LEU B 225 VAL B 232 -1 O ALA B 229 N SER B 206 SHEET 3 AA6 6 ILE B 167 ALA B 177 1 N HIS B 176 O PHE B 230 SHEET 4 AA6 6 SER B 238 LEU B 246 -1 O ASP B 241 N THR B 173 SHEET 5 AA6 6 PHE B 304 TYR B 311 -1 O LEU B 307 N LEU B 242 SHEET 6 AA6 6 ILE B 298 ASN B 301 -1 N ILE B 298 O LYS B 306 LINK O ALA A 20 NA NA A 402 1555 1555 2.49 LINK O ARG A 23 NA NA A 402 1555 1555 2.37 LINK O ILE A 26 NA NA A 402 1555 1555 2.33 LINK OE2 GLU A 76 NA NA A 403 1555 1555 2.41 LINK NA NA A 402 O HOH A 589 1555 1555 2.89 LINK NA NA A 403 O HOH A 551 1555 1555 3.04 LINK O ALA B 20 NA NA B 804 1555 1555 2.34 LINK O ARG B 23 NA NA B 804 1555 1555 2.28 LINK O ILE B 26 NA NA B 804 1555 1555 2.23 LINK NA NA B 804 O HOH B 938 1555 1555 2.78 LINK NA NA B 804 O HOH B1046 1555 1555 2.93 LINK NA NA B 804 O HOH B1061 1555 1555 2.33 SITE 1 AC1 7 GLY A 132 ALA A 133 ASN A 134 PHE A 135 SITE 2 AC1 7 ASP A 136 GLU A 266 MET A 267 SITE 1 AC2 4 ALA A 20 ARG A 23 ILE A 26 HOH A 589 SITE 1 AC3 5 GLU A 76 ARG A 77 ASP A 78 ASN A 81 SITE 2 AC3 5 HOH A 551 SITE 1 AC4 6 LYS B 131 GLY B 132 ALA B 133 ASN B 134 SITE 2 AC4 6 PHE B 135 ASP B 136 SITE 1 AC5 6 THR B 126 PRO B 127 MET B 128 LYS B 216 SITE 2 AC5 6 HOH B 934 HOH B 958 SITE 1 AC6 5 ASN B 162 ASP B 163 PHE B 165 GLY B 166 SITE 2 AC6 5 GLU B 247 SITE 1 AC7 6 ALA B 20 ARG B 23 ILE B 26 HOH B 938 SITE 2 AC7 6 HOH B1046 HOH B1061 CRYST1 77.912 186.966 121.751 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012835 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008213 0.00000