HEADER TRANSFERASE 01-NOV-19 6UUX TITLE SCHISTOSOMA MANSONI (BLOOD FLUKE) SULFOTRANSFERASE/HYCANTHONE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SULFOTRANSFERASE OXAMNIQUINE RESISTANCE PROTEIN; COMPND 5 EC: 2.8.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: SULT-OR, SMP_089320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAG8H KEYWDS SULFOTRANSFERASE, PARASITE, HYCANTHONE, DRUG RESISTANCE, TRANSFERASE, KEYWDS 2 SCHISTOSOME EXPDTA X-RAY DIFFRACTION AUTHOR A.B.TAYLOR REVDAT 3 11-OCT-23 6UUX 1 REMARK REVDAT 2 26-FEB-20 6UUX 1 JRNL REVDAT 1 19-FEB-20 6UUX 0 JRNL AUTH M.GUZMAN,A.RUGEL,R.S.TARPLEY,X.CAO,S.F.MCHARDY,P.T.LOVERDE, JRNL AUTH 2 A.B.TAYLOR JRNL TITL MOLECULAR BASIS FOR HYCANTHONE DRUG ACTION IN SCHISTOSOME JRNL TITL 2 PARASITES. JRNL REF MOL.BIOCHEM.PARASITOL. V. 236 11257 2020 JRNL REFN ISSN 0166-6851 JRNL PMID 32027942 JRNL DOI 10.1016/J.MOLBIOPARA.2020.111257 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2900 - 3.6100 1.00 3575 153 0.1452 0.1644 REMARK 3 2 3.6100 - 2.8700 1.00 3411 147 0.1529 0.1846 REMARK 3 3 2.8700 - 2.5100 1.00 3373 144 0.1711 0.2257 REMARK 3 4 2.5100 - 2.2800 1.00 3351 143 0.1594 0.2033 REMARK 3 5 2.2800 - 2.1100 1.00 3333 143 0.1563 0.2036 REMARK 3 6 2.1100 - 1.9900 1.00 3306 141 0.1662 0.2028 REMARK 3 7 1.9900 - 1.8900 1.00 3327 144 0.1753 0.2550 REMARK 3 8 1.8900 - 1.8100 1.00 3276 140 0.1799 0.2267 REMARK 3 9 1.8100 - 1.7400 1.00 3320 142 0.1965 0.2315 REMARK 3 10 1.7400 - 1.6800 1.00 3299 141 0.2113 0.3014 REMARK 3 11 1.6800 - 1.6300 1.00 3282 140 0.2208 0.2633 REMARK 3 12 1.6300 - 1.5800 1.00 3278 141 0.2389 0.2723 REMARK 3 13 1.5800 - 1.5400 1.00 3283 141 0.2772 0.3428 REMARK 3 14 1.5400 - 1.5000 1.00 3281 140 0.3171 0.3579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.168 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2224 REMARK 3 ANGLE : 1.008 3024 REMARK 3 CHIRALITY : 0.075 339 REMARK 3 PLANARITY : 0.005 373 REMARK 3 DIHEDRAL : 18.141 832 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48756 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 1.42900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 5BYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CITRATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 69.81000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.81000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 19.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 65 REMARK 465 PRO A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 91 169.71 75.96 REMARK 500 TYR A 105 76.76 -118.70 REMARK 500 VAL A 127 -56.27 -121.55 REMARK 500 ASN A 150 -154.88 -117.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A3P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QHM A 302 DBREF 6UUX A 1 257 UNP G4VLE5 G4VLE5_SCHMA 1 257 SEQADV 6UUX GLY A -1 UNP G4VLE5 EXPRESSION TAG SEQADV 6UUX ALA A 0 UNP G4VLE5 EXPRESSION TAG SEQRES 1 A 259 GLY ALA MET ILE GLU SER SER THR THR ILE GLN VAL ILE SEQRES 2 A 259 SER ALA GLY LEU PRO ARG THR GLY THR LYS SER LEU LYS SEQRES 3 A 259 ASN ALA LEU GLU ILE ILE TYR HIS LYS PRO CYS TYR HIS SEQRES 4 A 259 MET PHE GLU ILE ILE PHE ASN LYS GLN SER ASP ILE ILE SEQRES 5 A 259 LYS TRP GLN ASN LEU ILE HIS ASP SER HIS MET ILE THR SEQRES 6 A 259 THR PRO PRO PRO LEU THR THR LYS THR ILE ALA ILE TYR SEQRES 7 A 259 ASP LYS LEU LYS GLU LEU LEU ASP GLY TYR ILE ALA THR SEQRES 8 A 259 THR ASP LEU PRO THR CYS GLY PHE TYR LYS ASP LEU MET SEQRES 9 A 259 ASN ILE TYR PRO ASN ALA LYS VAL LEU LEU THR ILE ARG SEQRES 10 A 259 ASP LYS TYR ASP TRP LEU HIS SER LEU ARG LYS VAL VAL SEQRES 11 A 259 LEU PRO LYS SER ASN ASP PRO TRP LYS LEU LYS ILE GLU SEQRES 12 A 259 GLU GLY ASP LYS VAL LEU GLY LEU ASN SER ASP PHE TYR SEQRES 13 A 259 LYS LEU THR GLU ASP SER LEU LYS PHE ALA PHE GLN LYS SEQRES 14 A 259 ASP ASP LEU ASN PHE ASP ASP ASP GLN VAL LEU LEU GLU SEQRES 15 A 259 CYS TYR ASP GLU TYR ASN ARG LEU VAL GLN GLU THR VAL SEQRES 16 A 259 PRO SER ASP ARG LEU LEU VAL LEU ARG LEU GLY ASP GLY SEQRES 17 A 259 TRP GLU PRO LEU CYS LYS PHE LEU ASN VAL GLU ILE PRO SEQRES 18 A 259 ASN GLY ILE ASP TYR PRO CAS VAL ASN SER HIS HIS GLN SEQRES 19 A 259 MET THR GLN LEU THR GLU GLN LEU ILE LYS TYR LYS SER SEQRES 20 A 259 LEU ASP ALA ILE ILE HIS MET PHE PRO ASP LEU ILE MODRES 6UUX CAS A 226 CYS MODIFIED RESIDUE HET CAS A 226 9 HET A3P A 301 27 HET QHM A 302 25 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE HETNAM QHM HYCANTHONE HETSYN QHM 1-{[2-(DIETHYLAMINO)ETHYL]AMINO}-4-(HYDROXYMETHYL)-9H- HETSYN 2 QHM THIOXANTHEN-9-ONE FORMUL 1 CAS C5 H12 AS N O2 S FORMUL 2 A3P C10 H15 N5 O10 P2 FORMUL 3 QHM C20 H24 N2 O2 S FORMUL 4 HOH *328(H2 O) HELIX 1 AA1 GLY A 19 HIS A 32 1 14 HELIX 2 AA2 HIS A 37 ASN A 44 1 8 HELIX 3 AA3 LYS A 45 SER A 47 5 3 HELIX 4 AA4 ASP A 48 SER A 59 1 12 HELIX 5 AA5 HIS A 60 ILE A 62 5 3 HELIX 6 AA6 THR A 69 LEU A 83 1 15 HELIX 7 AA7 THR A 94 GLY A 96 5 3 HELIX 8 AA8 PHE A 97 TYR A 105 1 9 HELIX 9 AA9 ASP A 116 VAL A 128 1 13 HELIX 10 AB1 PRO A 135 LEU A 147 1 13 HELIX 11 AB2 ASN A 150 GLN A 166 1 17 HELIX 12 AB3 ASP A 174 VAL A 193 1 20 HELIX 13 AB4 PRO A 194 ASP A 196 5 3 HELIX 14 AB5 GLY A 206 ASN A 215 1 10 HELIX 15 AB6 SER A 229 LYS A 244 1 16 HELIX 16 AB7 ILE A 249 PHE A 253 5 5 SHEET 1 AA1 5 CYS A 35 TYR A 36 0 SHEET 2 AA1 5 ALA A 88 THR A 89 1 O ALA A 88 N TYR A 36 SHEET 3 AA1 5 VAL A 10 SER A 12 1 N SER A 12 O THR A 89 SHEET 4 AA1 5 LYS A 109 ILE A 114 1 O LYS A 109 N ILE A 11 SHEET 5 AA1 5 LEU A 198 ARG A 202 1 O LEU A 201 N LEU A 112 LINK C PRO A 225 N CAS A 226 1555 1555 1.34 LINK C CAS A 226 N VAL A 227 1555 1555 1.33 CISPEP 1 LEU A 92 PRO A 93 0 -0.67 SITE 1 AC1 23 ARG A 17 THR A 18 GLY A 19 THR A 20 SITE 2 AC1 23 LYS A 21 SER A 22 ARG A 115 SER A 123 SITE 3 AC1 23 LEU A 203 PRO A 225 CAS A 226 VAL A 227 SITE 4 AC1 23 ASN A 228 SER A 229 HIS A 230 HOH A 414 SITE 5 AC1 23 HOH A 481 HOH A 500 HOH A 506 HOH A 521 SITE 6 AC1 23 HOH A 553 HOH A 624 HOH A 630 SITE 1 AC2 11 MET A 38 ASP A 91 VAL A 128 ASP A 144 SITE 2 AC2 11 LEU A 147 PHE A 153 THR A 157 THR A 237 SITE 3 AC2 11 HOH A 443 HOH A 454 HOH A 506 CRYST1 139.620 39.300 54.120 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.025445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018477 0.00000