HEADER RNA BINDING PROTEIN 01-NOV-19 6UV0 TITLE CRYSTAL STRUCTURE OF APO CORE DOMAIN OF RNA HELICASE DDX17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX17; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEAD BOX PROTEIN 17,DEAD BOX PROTEIN P72,DEAD BOX PROTEIN COMPND 5 P82,RNA-DEPENDENT HELICASE P72; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEAD-BOX ATPASE, RNA HELICASE, RNA BINDING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.D.NGO,A.C.PARTIN,Y.NAM REVDAT 3 03-APR-24 6UV0 1 REMARK REVDAT 2 06-MAR-24 6UV0 1 REMARK REVDAT 1 01-JAN-20 6UV0 0 JRNL AUTH T.D.NGO,A.C.PARTIN,Y.NAM JRNL TITL RNA SPECIFICITY AND AUTOREGULATION OF DDX17, A MODULATOR OF JRNL TITL 2 MICRORNA BIOGENESIS. JRNL REF CELL REP V. 29 4024 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31851931 JRNL DOI 10.1016/J.CELREP.2019.11.059 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9060 - 6.2653 0.99 2297 152 0.2026 0.2400 REMARK 3 2 6.2653 - 4.9745 1.00 2224 147 0.2180 0.2304 REMARK 3 3 4.9745 - 4.3462 1.00 2191 146 0.1641 0.2097 REMARK 3 4 4.3462 - 3.9490 1.00 2166 143 0.1871 0.2223 REMARK 3 5 3.9490 - 3.6660 1.00 2171 144 0.1989 0.2552 REMARK 3 6 3.6660 - 3.4500 1.00 2143 142 0.2036 0.2836 REMARK 3 7 3.4500 - 3.2772 1.00 2153 144 0.2244 0.2865 REMARK 3 8 3.2772 - 3.1346 1.00 2136 142 0.2462 0.3130 REMARK 3 9 3.1346 - 3.0139 1.00 2166 143 0.2430 0.2766 REMARK 3 10 3.0139 - 2.9099 1.00 2109 140 0.2533 0.2898 REMARK 3 11 2.9099 - 2.8190 1.00 2105 139 0.2447 0.2955 REMARK 3 12 2.8190 - 2.7384 1.00 2159 144 0.2568 0.2697 REMARK 3 13 2.7384 - 2.6663 0.98 2090 139 0.2700 0.3740 REMARK 3 14 2.6663 - 2.6013 0.94 2001 133 0.2906 0.3535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7778 -26.8021 -16.8873 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.2545 REMARK 3 T33: 0.2300 T12: 0.0073 REMARK 3 T13: -0.0176 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 1.6467 L22: 3.9573 REMARK 3 L33: 1.8500 L12: 0.2471 REMARK 3 L13: -0.1079 L23: -0.8970 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: -0.0145 S13: 0.1233 REMARK 3 S21: -0.0407 S22: -0.0009 S23: -0.1323 REMARK 3 S31: 0.0148 S32: 0.0270 S33: 0.0737 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7147 -16.5551 -16.6358 REMARK 3 T TENSOR REMARK 3 T11: 0.3959 T22: 0.4970 REMARK 3 T33: 0.7207 T12: 0.0494 REMARK 3 T13: -0.0866 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 5.5327 L22: 2.7805 REMARK 3 L33: 2.3778 L12: -0.7490 REMARK 3 L13: -3.5672 L23: 0.0253 REMARK 3 S TENSOR REMARK 3 S11: 0.1771 S12: 0.6778 S13: 0.6942 REMARK 3 S21: -0.0797 S22: 0.4080 S23: 0.6257 REMARK 3 S31: -0.3248 S32: -0.9191 S33: -0.5447 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6243 -1.2194 -22.6796 REMARK 3 T TENSOR REMARK 3 T11: 0.6450 T22: 0.4379 REMARK 3 T33: 0.8827 T12: 0.0340 REMARK 3 T13: -0.1432 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 3.4789 L22: 7.0684 REMARK 3 L33: 3.2887 L12: 4.7991 REMARK 3 L13: -1.3423 L23: -1.7040 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: -0.1888 S13: 0.0867 REMARK 3 S21: -0.2604 S22: -0.1154 S23: -0.0882 REMARK 3 S31: -0.4622 S32: 0.0163 S33: 0.1288 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7587 -3.4654 -57.3428 REMARK 3 T TENSOR REMARK 3 T11: 0.2940 T22: 0.3195 REMARK 3 T33: 0.2626 T12: 0.0577 REMARK 3 T13: 0.0310 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.4845 L22: 5.4297 REMARK 3 L33: 2.1538 L12: 0.6493 REMARK 3 L13: 0.1145 L23: -1.4323 REMARK 3 S TENSOR REMARK 3 S11: 0.0893 S12: 0.0721 S13: -0.2925 REMARK 3 S21: -0.1595 S22: -0.1432 S23: -0.2387 REMARK 3 S31: 0.2801 S32: 0.1514 S33: 0.0637 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 311 THROUGH 468 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6672 -28.1357 -56.9669 REMARK 3 T TENSOR REMARK 3 T11: 1.0520 T22: 0.7306 REMARK 3 T33: 1.4241 T12: -0.1478 REMARK 3 T13: -0.2470 T23: 0.2042 REMARK 3 L TENSOR REMARK 3 L11: 1.9977 L22: 4.2619 REMARK 3 L33: 5.8855 L12: 0.1031 REMARK 3 L13: -0.1591 L23: -4.3844 REMARK 3 S TENSOR REMARK 3 S11: -0.4656 S12: 0.5393 S13: 1.0878 REMARK 3 S21: 0.0327 S22: 0.2892 S23: 0.8444 REMARK 3 S31: -0.5049 S32: -0.3188 S33: 0.1931 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000243916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07218 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32184 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: APO DDX17 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG, 0.26M NASCN, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.82450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.46200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.90550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.46200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.82450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.90550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 GLU A 36 REMARK 465 ARG A 37 REMARK 465 LEU A 38 REMARK 465 ARG A 39 REMARK 465 SER A 306 REMARK 465 ALA A 307 REMARK 465 ASN A 308 REMARK 465 ALA A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 GLU A 339 REMARK 465 ASN A 340 REMARK 465 VAL A 398 REMARK 465 ALA A 399 REMARK 465 SER A 400 REMARK 465 ARG A 401 REMARK 465 ARG A 476 REMARK 465 GLY A 477 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 GLY B 32 REMARK 465 ASN B 33 REMARK 465 PRO B 34 REMARK 465 GLY B 35 REMARK 465 GLU B 36 REMARK 465 ARG B 37 REMARK 465 LEU B 38 REMARK 465 ARG B 39 REMARK 465 LYS B 40 REMARK 465 LYS B 41 REMARK 465 GLU B 304 REMARK 465 LEU B 305 REMARK 465 SER B 306 REMARK 465 ALA B 307 REMARK 465 ALA B 336 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 GLU B 339 REMARK 465 ASN B 340 REMARK 465 GLY B 371 REMARK 465 ASP B 372 REMARK 465 LYS B 373 REMARK 465 SER B 374 REMARK 465 VAL B 398 REMARK 465 ALA B 399 REMARK 465 SER B 400 REMARK 465 ARG B 401 REMARK 465 ARG B 432 REMARK 465 SER B 433 REMARK 465 THR B 434 REMARK 465 ASN B 435 REMARK 465 LYS B 436 REMARK 465 LEU B 469 REMARK 465 MET B 470 REMARK 465 GLN B 471 REMARK 465 LEU B 472 REMARK 465 VAL B 473 REMARK 465 ASP B 474 REMARK 465 HIS B 475 REMARK 465 ARG B 476 REMARK 465 GLY B 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 ARG A 350 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 ASN B 308 CG OD1 ND2 REMARK 470 GLU B 377 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 474 O HOH A 901 1.94 REMARK 500 O HOH B 517 O HOH B 518 1.97 REMARK 500 OE1 GLN A 272 O HOH A 902 2.06 REMARK 500 OE1 GLN B 272 O HOH B 501 2.10 REMARK 500 OE1 GLN B 180 O HOH B 502 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 389 OE1 GLU B 406 3554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -33.29 -132.90 REMARK 500 PHE A 92 14.05 -141.49 REMARK 500 GLU A 304 -127.66 57.78 REMARK 500 CYS A 318 -155.10 -127.38 REMARK 500 SER A 321 4.19 -68.85 REMARK 500 LEU A 330 -1.58 -59.23 REMARK 500 THR A 396 60.01 -119.37 REMARK 500 PHE B 92 12.55 -144.70 REMARK 500 MET B 319 170.26 -56.18 REMARK 500 HIS B 325 -4.55 -57.84 REMARK 500 LYS B 326 -63.54 -93.76 REMARK 500 GLU B 332 30.41 -98.17 REMARK 500 ASP B 379 42.24 -71.64 REMARK 500 PRO B 445 34.31 -71.36 REMARK 500 GLN B 450 30.42 -145.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 425 ARG B 426 145.72 REMARK 500 GLN B 450 ALA B 451 142.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 6UV0 A 32 477 UNP Q92841 DDX17_HUMAN 111 556 DBREF 6UV0 B 32 477 UNP Q92841 DDX17_HUMAN 111 556 SEQADV 6UV0 SER A 30 UNP Q92841 EXPRESSION TAG SEQADV 6UV0 GLY A 31 UNP Q92841 EXPRESSION TAG SEQADV 6UV0 SER B 30 UNP Q92841 EXPRESSION TAG SEQADV 6UV0 GLY B 31 UNP Q92841 EXPRESSION TAG SEQRES 1 A 448 SER GLY GLY ASN PRO GLY GLU ARG LEU ARG LYS LYS LYS SEQRES 2 A 448 TRP ASP LEU SER GLU LEU PRO LYS PHE GLU LYS ASN PHE SEQRES 3 A 448 TYR VAL GLU HIS PRO GLU VAL ALA ARG LEU THR PRO TYR SEQRES 4 A 448 GLU VAL ASP GLU LEU ARG ARG LYS LYS GLU ILE THR VAL SEQRES 5 A 448 ARG GLY GLY ASP VAL CYS PRO LYS PRO VAL PHE ALA PHE SEQRES 6 A 448 HIS HIS ALA ASN PHE PRO GLN TYR VAL MET ASP VAL LEU SEQRES 7 A 448 MET ASP GLN HIS PHE THR GLU PRO THR PRO ILE GLN CYS SEQRES 8 A 448 GLN GLY PHE PRO LEU ALA LEU SER GLY ARG ASP MET VAL SEQRES 9 A 448 GLY ILE ALA GLN THR GLY SER GLY LYS THR LEU ALA TYR SEQRES 10 A 448 LEU LEU PRO ALA ILE VAL HIS ILE ASN HIS GLN PRO TYR SEQRES 11 A 448 LEU GLU ARG GLY ASP GLY PRO ILE CYS LEU VAL LEU ALA SEQRES 12 A 448 PRO THR ARG GLU LEU ALA GLN GLN VAL GLN GLN VAL ALA SEQRES 13 A 448 ASP ASP TYR GLY LYS CYS SER ARG LEU LYS SER THR CYS SEQRES 14 A 448 ILE TYR GLY GLY ALA PRO LYS GLY PRO GLN ILE ARG ASP SEQRES 15 A 448 LEU GLU ARG GLY VAL GLU ILE CYS ILE ALA THR PRO GLY SEQRES 16 A 448 ARG LEU ILE ASP PHE LEU GLU SER GLY LYS THR ASN LEU SEQRES 17 A 448 ARG ARG CYS THR TYR LEU VAL LEU ASP GLU ALA ASP ARG SEQRES 18 A 448 MET LEU ASP MET GLY PHE GLU PRO GLN ILE ARG LYS ILE SEQRES 19 A 448 VAL ASP GLN ILE ARG PRO ASP ARG GLN THR LEU MET TRP SEQRES 20 A 448 SER ALA THR TRP PRO LYS GLU VAL ARG GLN LEU ALA GLU SEQRES 21 A 448 ASP PHE LEU ARG ASP TYR THR GLN ILE ASN VAL GLY ASN SEQRES 22 A 448 LEU GLU LEU SER ALA ASN HIS ASN ILE LEU GLN ILE VAL SEQRES 23 A 448 ASP VAL CYS MET GLU SER GLU LYS ASP HIS LYS LEU ILE SEQRES 24 A 448 GLN LEU MET GLU GLU ILE MET ALA GLU LYS GLU ASN LYS SEQRES 25 A 448 THR ILE ILE PHE VAL GLU THR LYS ARG ARG CYS ASP ASP SEQRES 26 A 448 LEU THR ARG ARG MET ARG ARG ASP GLY TRP PRO ALA MET SEQRES 27 A 448 CYS ILE HIS GLY ASP LYS SER GLN PRO GLU ARG ASP TRP SEQRES 28 A 448 VAL LEU ASN GLU PHE ARG SER GLY LYS ALA PRO ILE LEU SEQRES 29 A 448 ILE ALA THR ASP VAL ALA SER ARG GLY LEU ASP VAL GLU SEQRES 30 A 448 ASP VAL LYS PHE VAL ILE ASN TYR ASP TYR PRO ASN SER SEQRES 31 A 448 SER GLU ASP TYR VAL HIS ARG ILE GLY ARG THR ALA ARG SEQRES 32 A 448 SER THR ASN LYS GLY THR ALA TYR THR PHE PHE THR PRO SEQRES 33 A 448 GLY ASN LEU LYS GLN ALA ARG GLU LEU ILE LYS VAL LEU SEQRES 34 A 448 GLU GLU ALA ASN GLN ALA ILE ASN PRO LYS LEU MET GLN SEQRES 35 A 448 LEU VAL ASP HIS ARG GLY SEQRES 1 B 448 SER GLY GLY ASN PRO GLY GLU ARG LEU ARG LYS LYS LYS SEQRES 2 B 448 TRP ASP LEU SER GLU LEU PRO LYS PHE GLU LYS ASN PHE SEQRES 3 B 448 TYR VAL GLU HIS PRO GLU VAL ALA ARG LEU THR PRO TYR SEQRES 4 B 448 GLU VAL ASP GLU LEU ARG ARG LYS LYS GLU ILE THR VAL SEQRES 5 B 448 ARG GLY GLY ASP VAL CYS PRO LYS PRO VAL PHE ALA PHE SEQRES 6 B 448 HIS HIS ALA ASN PHE PRO GLN TYR VAL MET ASP VAL LEU SEQRES 7 B 448 MET ASP GLN HIS PHE THR GLU PRO THR PRO ILE GLN CYS SEQRES 8 B 448 GLN GLY PHE PRO LEU ALA LEU SER GLY ARG ASP MET VAL SEQRES 9 B 448 GLY ILE ALA GLN THR GLY SER GLY LYS THR LEU ALA TYR SEQRES 10 B 448 LEU LEU PRO ALA ILE VAL HIS ILE ASN HIS GLN PRO TYR SEQRES 11 B 448 LEU GLU ARG GLY ASP GLY PRO ILE CYS LEU VAL LEU ALA SEQRES 12 B 448 PRO THR ARG GLU LEU ALA GLN GLN VAL GLN GLN VAL ALA SEQRES 13 B 448 ASP ASP TYR GLY LYS CYS SER ARG LEU LYS SER THR CYS SEQRES 14 B 448 ILE TYR GLY GLY ALA PRO LYS GLY PRO GLN ILE ARG ASP SEQRES 15 B 448 LEU GLU ARG GLY VAL GLU ILE CYS ILE ALA THR PRO GLY SEQRES 16 B 448 ARG LEU ILE ASP PHE LEU GLU SER GLY LYS THR ASN LEU SEQRES 17 B 448 ARG ARG CYS THR TYR LEU VAL LEU ASP GLU ALA ASP ARG SEQRES 18 B 448 MET LEU ASP MET GLY PHE GLU PRO GLN ILE ARG LYS ILE SEQRES 19 B 448 VAL ASP GLN ILE ARG PRO ASP ARG GLN THR LEU MET TRP SEQRES 20 B 448 SER ALA THR TRP PRO LYS GLU VAL ARG GLN LEU ALA GLU SEQRES 21 B 448 ASP PHE LEU ARG ASP TYR THR GLN ILE ASN VAL GLY ASN SEQRES 22 B 448 LEU GLU LEU SER ALA ASN HIS ASN ILE LEU GLN ILE VAL SEQRES 23 B 448 ASP VAL CYS MET GLU SER GLU LYS ASP HIS LYS LEU ILE SEQRES 24 B 448 GLN LEU MET GLU GLU ILE MET ALA GLU LYS GLU ASN LYS SEQRES 25 B 448 THR ILE ILE PHE VAL GLU THR LYS ARG ARG CYS ASP ASP SEQRES 26 B 448 LEU THR ARG ARG MET ARG ARG ASP GLY TRP PRO ALA MET SEQRES 27 B 448 CYS ILE HIS GLY ASP LYS SER GLN PRO GLU ARG ASP TRP SEQRES 28 B 448 VAL LEU ASN GLU PHE ARG SER GLY LYS ALA PRO ILE LEU SEQRES 29 B 448 ILE ALA THR ASP VAL ALA SER ARG GLY LEU ASP VAL GLU SEQRES 30 B 448 ASP VAL LYS PHE VAL ILE ASN TYR ASP TYR PRO ASN SER SEQRES 31 B 448 SER GLU ASP TYR VAL HIS ARG ILE GLY ARG THR ALA ARG SEQRES 32 B 448 SER THR ASN LYS GLY THR ALA TYR THR PHE PHE THR PRO SEQRES 33 B 448 GLY ASN LEU LYS GLN ALA ARG GLU LEU ILE LYS VAL LEU SEQRES 34 B 448 GLU GLU ALA ASN GLN ALA ILE ASN PRO LYS LEU MET GLN SEQRES 35 B 448 LEU VAL ASP HIS ARG GLY HET MG A 800 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *98(H2 O) HELIX 1 AA1 ASP A 44 LEU A 48 5 5 HELIX 2 AA2 HIS A 59 ARG A 64 1 6 HELIX 3 AA3 THR A 66 LYS A 77 1 12 HELIX 4 AA4 ALA A 93 ASN A 98 5 6 HELIX 5 AA5 PRO A 100 GLN A 110 1 11 HELIX 6 AA6 THR A 116 SER A 128 1 13 HELIX 7 AA7 GLY A 141 HIS A 156 1 16 HELIX 8 AA8 THR A 174 LYS A 190 1 17 HELIX 9 AA9 PRO A 204 GLY A 215 1 12 HELIX 10 AB1 THR A 222 SER A 232 1 11 HELIX 11 AB2 GLU A 247 MET A 254 1 8 HELIX 12 AB3 PHE A 256 ASP A 265 1 10 HELIX 13 AB4 PRO A 281 LEU A 292 1 12 HELIX 14 AB5 MET A 319 SER A 321 5 3 HELIX 15 AB6 GLU A 322 GLU A 333 1 12 HELIX 16 AB7 LYS A 349 ASP A 362 1 14 HELIX 17 AB8 SER A 374 GLY A 388 1 15 HELIX 18 AB9 SER A 420 ARG A 432 1 13 HELIX 19 AC1 ASN A 447 ALA A 461 1 15 HELIX 20 AC2 ASN A 466 GLN A 471 1 6 HELIX 21 AC3 HIS B 59 ARG B 64 1 6 HELIX 22 AC4 THR B 66 LYS B 77 1 12 HELIX 23 AC5 ALA B 93 ASN B 98 5 6 HELIX 24 AC6 PRO B 100 GLN B 110 1 11 HELIX 25 AC7 THR B 116 SER B 128 1 13 HELIX 26 AC8 GLY B 141 HIS B 156 1 16 HELIX 27 AC9 THR B 174 ARG B 193 1 20 HELIX 28 AD1 PRO B 204 GLY B 215 1 12 HELIX 29 AD2 THR B 222 SER B 232 1 11 HELIX 30 AD3 GLU B 247 MET B 254 1 8 HELIX 31 AD4 PHE B 256 ASP B 265 1 10 HELIX 32 AD5 PRO B 281 LEU B 292 1 12 HELIX 33 AD6 LYS B 323 MET B 331 1 9 HELIX 34 AD7 LYS B 349 ASP B 362 1 14 HELIX 35 AD8 ASP B 379 SER B 387 1 9 HELIX 36 AD9 SER B 420 HIS B 425 1 6 HELIX 37 AE1 ASN B 447 GLN B 450 5 4 HELIX 38 AE2 ALA B 451 ALA B 461 1 11 SHEET 1 AA1 8 ILE A 79 VAL A 81 0 SHEET 2 AA1 8 THR A 296 VAL A 300 -1 O ASN A 299 N THR A 80 SHEET 3 AA1 8 MET A 132 ILE A 135 1 N ILE A 135 O ILE A 298 SHEET 4 AA1 8 GLN A 272 SER A 277 1 O MET A 275 N MET A 132 SHEET 5 AA1 8 TYR A 242 LEU A 245 1 N LEU A 245 O TRP A 276 SHEET 6 AA1 8 CYS A 168 LEU A 171 1 N LEU A 171 O VAL A 244 SHEET 7 AA1 8 ILE A 218 ALA A 221 1 O CYS A 219 N VAL A 170 SHEET 8 AA1 8 SER A 196 ILE A 199 1 N THR A 197 O ILE A 220 SHEET 1 AA2 6 LEU A 312 VAL A 317 0 SHEET 2 AA2 6 THR A 438 PHE A 443 1 O ALA A 439 N ILE A 314 SHEET 3 AA2 6 PHE A 410 ASN A 413 1 N VAL A 411 O TYR A 440 SHEET 4 AA2 6 THR A 342 PHE A 345 1 N ILE A 343 O ILE A 412 SHEET 5 AA2 6 ILE A 392 ALA A 395 1 O LEU A 393 N ILE A 344 SHEET 6 AA2 6 ALA A 366 ILE A 369 1 N MET A 367 O ILE A 392 SHEET 1 AA3 8 ILE B 79 VAL B 81 0 SHEET 2 AA3 8 THR B 296 VAL B 300 -1 O ASN B 299 N THR B 80 SHEET 3 AA3 8 MET B 132 ILE B 135 1 N ILE B 135 O VAL B 300 SHEET 4 AA3 8 GLN B 272 SER B 277 1 O SER B 277 N GLY B 134 SHEET 5 AA3 8 TYR B 242 LEU B 245 1 N LEU B 243 O GLN B 272 SHEET 6 AA3 8 CYS B 168 LEU B 171 1 N LEU B 171 O VAL B 244 SHEET 7 AA3 8 ILE B 218 ALA B 221 1 O CYS B 219 N VAL B 170 SHEET 8 AA3 8 SER B 196 ILE B 199 1 N ILE B 199 O ILE B 220 SHEET 1 AA4 6 LEU B 312 VAL B 317 0 SHEET 2 AA4 6 THR B 438 PHE B 443 1 O ALA B 439 N LEU B 312 SHEET 3 AA4 6 PHE B 410 ASN B 413 1 N VAL B 411 O TYR B 440 SHEET 4 AA4 6 THR B 342 PHE B 345 1 N ILE B 343 O ILE B 412 SHEET 5 AA4 6 ILE B 392 ALA B 395 1 O LEU B 393 N THR B 342 SHEET 6 AA4 6 ALA B 366 CYS B 368 1 N MET B 367 O ILE B 392 CISPEP 1 GLY A 83 GLY A 84 0 -2.06 CISPEP 2 GLY B 83 GLY B 84 0 -0.06 CRYST1 67.649 97.811 154.924 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014782 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006455 0.00000