HEADER APOPTOSIS/INHIBITOR 02-NOV-19 6UVC TITLE CRYSTAL STRUCTURE OF BCL-XL BOUND TO COMPOUND 8: (R)-3-(BENZYLTHIO)-2- TITLE 2 (3-(2-((4'-CHLORO-[1,1'-BIPHENYL]-2-YL)METHYL)-1,2,3,4- TITLE 3 TETRAHYDROISOQUINOLINE-6-CARBONYL)-3-(4-METHYLBENZYL)UREIDO)PROPANOIC TITLE 4 ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS APOPTOSIS, BCL-2 FAMILY, BCL-XL, INHIBITOR, APOPTOSIS-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.ROY,R.BIRKINSHAW,G.LESSENE,P.E.CZABOTAR REVDAT 4 11-OCT-23 6UVC 1 REMARK REVDAT 3 26-MAY-21 6UVC 1 JRNL REVDAT 2 12-MAY-21 6UVC 1 JRNL REVDAT 1 05-MAY-21 6UVC 0 JRNL AUTH M.J.ROY,A.VOM,T.OKAMOTO,B.J.SMITH,R.W.BIRKINSHAW,H.YANG, JRNL AUTH 2 H.ABDO,C.A.WHITE,D.SEGAL,D.C.S.HUANG,J.B.BAELL,P.M.COLMAN, JRNL AUTH 3 P.E.CZABOTAR,G.LESSENE JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF POTENT BENZOYLUREA JRNL TITL 2 INHIBITORS OF BCL-X L AND BCL-2. JRNL REF J.MED.CHEM. V. 64 5447 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33904752 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01771 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 38991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1986 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 780 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2672 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 724 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE : 0.3264 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.18 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 56 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2273 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 153 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.09790 REMARK 3 B22 (A**2) : -5.31040 REMARK 3 B33 (A**2) : 6.40830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.113 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.107 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.109 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.104 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2581 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3492 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 894 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 519 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2581 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 294 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3265 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.89 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.73 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|2 - A|25 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.7735 -8.7071 -20.0744 REMARK 3 T TENSOR REMARK 3 T11: -0.1063 T22: 0.0061 REMARK 3 T33: -0.0923 T12: -0.0330 REMARK 3 T13: -0.0371 T23: 0.1504 REMARK 3 L TENSOR REMARK 3 L11: 4.4193 L22: 5.3122 REMARK 3 L33: 4.7251 L12: -0.7165 REMARK 3 L13: 2.1921 L23: -0.6473 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: 0.0821 S13: -0.0201 REMARK 3 S21: -0.0489 S22: 0.1166 S23: 0.0072 REMARK 3 S31: 0.0232 S32: -0.2322 S33: -0.1591 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|26 - A|100 } REMARK 3 ORIGIN FOR THE GROUP (A): -4.5485 -21.3015 -10.1864 REMARK 3 T TENSOR REMARK 3 T11: -0.0437 T22: 0.0874 REMARK 3 T33: 0.0604 T12: 0.0447 REMARK 3 T13: -0.0210 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.6828 L22: 4.5078 REMARK 3 L33: 10.4603 L12: 1.2175 REMARK 3 L13: -0.6300 L23: -3.2723 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0529 S13: 0.1680 REMARK 3 S21: -0.2145 S22: -0.0291 S23: 0.4661 REMARK 3 S31: 0.0623 S32: -0.3545 S33: 0.0351 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|101 - A|111 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.6736 -25.8918 7.7725 REMARK 3 T TENSOR REMARK 3 T11: -0.0787 T22: 0.1658 REMARK 3 T33: -0.1543 T12: 0.0583 REMARK 3 T13: 0.0007 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 0.6536 L22: 10.1226 REMARK 3 L33: 3.2204 L12: 3.3053 REMARK 3 L13: 5.7623 L23: 2.7475 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: -0.7861 S13: -0.0886 REMARK 3 S21: 0.8608 S22: -0.0926 S23: -0.3522 REMARK 3 S31: 0.0240 S32: -0.6311 S33: 0.1168 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|112 - A|118 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.4459 -20.5744 6.7380 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: 0.1841 REMARK 3 T33: 0.0026 T12: 0.0263 REMARK 3 T13: -0.1122 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 5.2773 L12: 2.4558 REMARK 3 L13: -2.0216 L23: 4.9031 REMARK 3 S TENSOR REMARK 3 S11: 0.2210 S12: -0.0902 S13: 0.0380 REMARK 3 S21: 0.1875 S22: 0.2034 S23: -0.0649 REMARK 3 S31: 0.4123 S32: -0.1124 S33: -0.4244 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|119 - A|136 } REMARK 3 ORIGIN FOR THE GROUP (A): 11.3255 -31.8618 -2.0488 REMARK 3 T TENSOR REMARK 3 T11: -0.0098 T22: -0.0260 REMARK 3 T33: -0.0773 T12: 0.0822 REMARK 3 T13: -0.0366 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 8.3446 L22: 3.4639 REMARK 3 L33: 7.9236 L12: 0.7569 REMARK 3 L13: 4.1081 L23: 1.5230 REMARK 3 S TENSOR REMARK 3 S11: 0.2378 S12: -0.4271 S13: -0.7121 REMARK 3 S21: 0.3784 S22: 0.0059 S23: -0.3631 REMARK 3 S31: 0.6252 S32: 0.3176 S33: -0.2437 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|137 - A|177 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.9442 -20.4749 -3.9761 REMARK 3 T TENSOR REMARK 3 T11: -0.0202 T22: 0.0852 REMARK 3 T33: -0.0801 T12: 0.0603 REMARK 3 T13: -0.0397 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 4.4264 L22: 3.8891 REMARK 3 L33: 2.8542 L12: 0.1909 REMARK 3 L13: 0.1962 L23: 1.2007 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: -0.2736 S13: 0.0908 REMARK 3 S21: 0.3297 S22: 0.2158 S23: -0.2488 REMARK 3 S31: 0.0705 S32: 0.3478 S33: -0.1092 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|178 - A|197 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.3994 -30.7238 -17.6518 REMARK 3 T TENSOR REMARK 3 T11: -0.1034 T22: -0.0910 REMARK 3 T33: -0.1525 T12: -0.0147 REMARK 3 T13: -0.0148 T23: -0.0944 REMARK 3 L TENSOR REMARK 3 L11: 3.6456 L22: 3.9221 REMARK 3 L33: 6.2049 L12: -1.5737 REMARK 3 L13: -3.4412 L23: 3.5191 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.3891 S13: -0.3677 REMARK 3 S21: -0.3050 S22: -0.1686 S23: 0.3344 REMARK 3 S31: 0.0572 S32: -0.3624 S33: 0.1666 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|0 - B|25 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.4190 -14.9183 -10.1390 REMARK 3 T TENSOR REMARK 3 T11: -0.1000 T22: -0.0363 REMARK 3 T33: -0.1085 T12: 0.0233 REMARK 3 T13: -0.0400 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 4.4281 L22: 5.0688 REMARK 3 L33: 4.1137 L12: -0.5432 REMARK 3 L13: -0.8544 L23: 2.0547 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: 0.1008 S13: 0.1712 REMARK 3 S21: -0.0760 S22: 0.0628 S23: -0.0450 REMARK 3 S31: -0.1640 S32: 0.0574 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|26 - B|100 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.2879 -3.4610 -10.0846 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.2289 REMARK 3 T33: -0.0127 T12: -0.0161 REMARK 3 T13: -0.0109 T23: 0.1292 REMARK 3 L TENSOR REMARK 3 L11: 10.4618 L22: 3.2417 REMARK 3 L33: 0.9080 L12: -1.4014 REMARK 3 L13: -0.1932 L23: 0.0538 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.5649 S13: 0.4493 REMARK 3 S21: 0.4171 S22: 0.0726 S23: -0.2110 REMARK 3 S31: -0.1129 S32: -0.2736 S33: -0.0926 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|101 - B|111 } REMARK 3 ORIGIN FOR THE GROUP (A): -24.3228 -1.1351 -16.9208 REMARK 3 T TENSOR REMARK 3 T11: -0.2596 T22: 0.2368 REMARK 3 T33: -0.0152 T12: 0.0887 REMARK 3 T13: 0.0711 T23: 0.2717 REMARK 3 L TENSOR REMARK 3 L11: 8.8572 L22: 5.0879 REMARK 3 L33: 10.6265 L12: 3.4508 REMARK 3 L13: -1.4573 L23: -1.9592 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: -0.0504 S13: 0.2797 REMARK 3 S21: 0.2337 S22: -0.0998 S23: 0.3613 REMARK 3 S31: -0.1413 S32: -0.5746 S33: 0.0721 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { B|112 - B|118 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.9025 -4.2431 -33.2785 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.5597 REMARK 3 T33: 0.2930 T12: -0.0367 REMARK 3 T13: -0.1633 T23: 0.2086 REMARK 3 L TENSOR REMARK 3 L11: 1.2101 L22: 0.8747 REMARK 3 L33: 2.3014 L12: -2.0568 REMARK 3 L13: -0.1468 L23: 2.7123 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: -0.0942 S13: 0.1877 REMARK 3 S21: -0.6271 S22: -0.1315 S23: 0.1428 REMARK 3 S31: -0.1452 S32: -0.4952 S33: 0.1960 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { B|119 - B|130 } REMARK 3 ORIGIN FOR THE GROUP (A): -15.7182 5.2327 -28.6920 REMARK 3 T TENSOR REMARK 3 T11: -0.2181 T22: 0.0078 REMARK 3 T33: -0.2064 T12: 0.1319 REMARK 3 T13: 0.0450 T23: 0.2818 REMARK 3 L TENSOR REMARK 3 L11: 5.2603 L22: 10.6282 REMARK 3 L33: 7.5660 L12: -1.4507 REMARK 3 L13: -1.1207 L23: 2.0207 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: 0.2248 S13: 0.2277 REMARK 3 S21: -0.4795 S22: 0.5404 S23: 0.7126 REMARK 3 S31: -1.0430 S32: -0.9576 S33: -0.4993 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { B|131 - B|156 } REMARK 3 ORIGIN FOR THE GROUP (A): -12.9348 2.0836 -20.0501 REMARK 3 T TENSOR REMARK 3 T11: -0.1172 T22: 0.0498 REMARK 3 T33: -0.1113 T12: 0.0840 REMARK 3 T13: 0.0433 T23: 0.1910 REMARK 3 L TENSOR REMARK 3 L11: 4.6200 L22: 5.3783 REMARK 3 L33: 3.5908 L12: 1.7214 REMARK 3 L13: 0.9863 L23: -0.3284 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: -0.2505 S13: 0.3097 REMARK 3 S21: 0.1070 S22: 0.2836 S23: 0.3453 REMARK 3 S31: -0.6665 S32: -0.7377 S33: -0.2549 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: { B|157 - B|177 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.9232 -2.8866 -29.1813 REMARK 3 T TENSOR REMARK 3 T11: -0.0256 T22: 0.1133 REMARK 3 T33: -0.0193 T12: 0.0203 REMARK 3 T13: -0.0144 T23: 0.1861 REMARK 3 L TENSOR REMARK 3 L11: 4.8028 L22: 10.7168 REMARK 3 L33: 7.6635 L12: 3.2332 REMARK 3 L13: 0.3531 L23: 2.0290 REMARK 3 S TENSOR REMARK 3 S11: 0.0987 S12: 0.1789 S13: -0.0413 REMARK 3 S21: -0.5149 S22: 0.2112 S23: 0.2504 REMARK 3 S31: -0.0706 S32: -0.6050 S33: -0.3099 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: { B|178 - B|186 } REMARK 3 ORIGIN FOR THE GROUP (A): -0.2540 11.4559 -16.9404 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: -0.0675 REMARK 3 T33: 0.1077 T12: -0.0394 REMARK 3 T13: 0.0412 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 4.1010 L22: 4.1147 REMARK 3 L33: 0.0524 L12: 5.7879 REMARK 3 L13: 2.6520 L23: 1.0173 REMARK 3 S TENSOR REMARK 3 S11: -0.0795 S12: 0.0293 S13: 0.8369 REMARK 3 S21: 0.8395 S22: 0.1908 S23: -0.6058 REMARK 3 S31: -0.7101 S32: 0.3137 S33: -0.1113 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: { B|187 - B|197 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.9290 4.3926 -6.9553 REMARK 3 T TENSOR REMARK 3 T11: -0.0338 T22: -0.0754 REMARK 3 T33: -0.2418 T12: -0.0253 REMARK 3 T13: -0.0231 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 6.6099 REMARK 3 L33: 1.1376 L12: -0.6172 REMARK 3 L13: 2.3519 L23: 1.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -1.0482 S13: 0.7426 REMARK 3 S21: 0.7411 S22: 0.0955 S23: -0.3801 REMARK 3 S31: -0.5844 S32: 0.3173 S33: -0.1153 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39075 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.85000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2YXJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 M AMMONIUM SULPHATE, 0.1 M HEPES REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.21850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.66200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.74800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.66200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.21850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.74800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 ASN B 198 REMARK 465 ALA B 199 REMARK 465 ALA B 200 REMARK 465 ALA B 201 REMARK 465 GLU B 202 REMARK 465 SER B 203 REMARK 465 ARG B 204 REMARK 465 LYS B 205 REMARK 465 GLY B 206 REMARK 465 GLN B 207 REMARK 465 GLU B 208 REMARK 465 ARG B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 ASN A 197 CG OD1 ND2 REMARK 470 SER B 0 OG REMARK 470 MET B 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 101 43.72 -107.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XOY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XOY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 DBREF 6UVC A 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 6UVC A 83 209 UNP Q07817 B2CL1_HUMAN 83 209 DBREF 6UVC B 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 6UVC B 83 209 UNP Q07817 B2CL1_HUMAN 83 209 SEQADV 6UVC GLY A -4 UNP Q07817 EXPRESSION TAG SEQADV 6UVC PRO A -3 UNP Q07817 EXPRESSION TAG SEQADV 6UVC LEU A -2 UNP Q07817 EXPRESSION TAG SEQADV 6UVC GLY A -1 UNP Q07817 EXPRESSION TAG SEQADV 6UVC SER A 0 UNP Q07817 EXPRESSION TAG SEQADV 6UVC GLY B -4 UNP Q07817 EXPRESSION TAG SEQADV 6UVC PRO B -3 UNP Q07817 EXPRESSION TAG SEQADV 6UVC LEU B -2 UNP Q07817 EXPRESSION TAG SEQADV 6UVC GLY B -1 UNP Q07817 EXPRESSION TAG SEQADV 6UVC SER B 0 UNP Q07817 EXPRESSION TAG SEQRES 1 A 158 GLY PRO LEU GLY SER MET SER GLN SER ASN ARG GLU LEU SEQRES 2 A 158 VAL VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY SEQRES 3 A 158 TYR SER TRP SER GLN MET ALA ALA VAL LYS GLN ALA LEU SEQRES 4 A 158 ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG ARG SEQRES 5 A 158 ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR PRO SEQRES 6 A 158 GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN GLU SEQRES 7 A 158 LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL ALA SEQRES 8 A 158 PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER VAL SEQRES 9 A 158 ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA ALA SEQRES 10 A 158 TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO TRP SEQRES 11 A 158 ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU LEU SEQRES 12 A 158 TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY GLN SEQRES 13 A 158 GLU ARG SEQRES 1 B 158 GLY PRO LEU GLY SER MET SER GLN SER ASN ARG GLU LEU SEQRES 2 B 158 VAL VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY SEQRES 3 B 158 TYR SER TRP SER GLN MET ALA ALA VAL LYS GLN ALA LEU SEQRES 4 B 158 ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG ARG SEQRES 5 B 158 ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR PRO SEQRES 6 B 158 GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN GLU SEQRES 7 B 158 LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL ALA SEQRES 8 B 158 PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER VAL SEQRES 9 B 158 ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA ALA SEQRES 10 B 158 TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO TRP SEQRES 11 B 158 ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU LEU SEQRES 12 B 158 TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY GLN SEQRES 13 B 158 GLU ARG HET XOY A 301 51 HET SO4 A 302 5 HET SO4 A 303 5 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET XOY B 301 51 HET SO4 B 302 5 HET EDO B 303 4 HET EDO B 304 4 HETNAM XOY (R)-3-(BENZYLTHIO)-2-(3-(2-((4'-CHLORO-[1,1'-BIPHENYL]- HETNAM 2 XOY 2-YL)METHYL)-1,2,3,4-TETRAHYDROISOQUINOLINE-6- HETNAM 3 XOY CARBONYL)-3-(4-METHYLBENZYL)UREIDO)PROPANOIC ACID HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 XOY 2(C42 H40 CL N3 O4 S) FORMUL 4 SO4 3(O4 S 2-) FORMUL 6 EDO 9(C2 H6 O2) FORMUL 17 HOH *203(H2 O) HELIX 1 AA1 SER A 2 GLN A 19 1 18 HELIX 2 AA2 SER A 25 TYR A 101 1 21 HELIX 3 AA3 ARG A 103 SER A 110 1 8 HELIX 4 AA4 THR A 118 PHE A 131 1 14 HELIX 5 AA5 ASN A 136 LYS A 157 1 22 HELIX 6 AA6 VAL A 161 LEU A 178 1 18 HELIX 7 AA7 LEU A 178 ASN A 185 1 8 HELIX 8 AA8 GLY A 187 ASN A 197 1 11 HELIX 9 AA9 MET B 1 GLN B 19 1 19 HELIX 10 AB1 SER B 25 TYR B 101 1 21 HELIX 11 AB2 TYR B 101 LEU B 112 1 12 HELIX 12 AB3 THR B 118 PHE B 131 1 14 HELIX 13 AB4 ASN B 136 LYS B 157 1 22 HELIX 14 AB5 VAL B 161 LEU B 178 1 18 HELIX 15 AB6 LEU B 178 ASN B 185 1 8 HELIX 16 AB7 GLY B 187 ASN B 197 1 11 SITE 1 AC1 15 ALA A 93 TYR A 101 ALA A 104 PHE A 105 SITE 2 AC1 15 LEU A 108 GLU A 129 TRP A 137 GLY A 138 SITE 3 AC1 15 ALA A 142 PHE A 146 PHE A 191 EDO A 308 SITE 4 AC1 15 HOH A 415 HOH A 481 HOH A 516 SITE 1 AC2 4 TYR A 22 SER A 23 HOH A 440 VAL B 155 SITE 1 AC3 4 ARG A 100 GLN A 160 VAL A 161 HOH A 433 SITE 1 AC4 4 GLN A 125 ASN A 128 HOH A 444 GLU B 96 SITE 1 AC5 4 TRP A 24 SER A 25 EDO A 309 HOH A 412 SITE 1 AC6 3 TYR A 101 ARG A 103 ALA A 104 SITE 1 AC7 4 GLY A 134 VAL A 135 TRP A 181 HOH A 483 SITE 1 AC8 5 LEU A 130 ARG A 139 XOY A 301 HOH A 415 SITE 2 AC8 5 HOH A 442 SITE 1 AC9 5 SER A 14 MET A 83 ALA A 84 LYS A 87 SITE 2 AC9 5 EDO A 305 SITE 1 AD1 3 GLN A 160 HOH A 411 TRP B 24 SITE 1 AD2 12 ALA B 93 TYR B 101 PHE B 105 LEU B 108 SITE 2 AD2 12 ASN B 136 TRP B 137 GLY B 138 ARG B 139 SITE 3 AD2 12 ALA B 142 PHE B 191 EDO B 304 HOH B 410 SITE 1 AD3 2 THR B 115 GLY B 117 SITE 1 AD4 6 ARG A 6 VAL A 10 ALA B 167 ALA B 168 SITE 2 AD4 6 HOH B 403 HOH B 408 SITE 1 AD5 3 ARG B 139 XOY B 301 HOH B 410 CRYST1 62.437 71.496 111.324 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008983 0.00000