HEADER ANTITUMOR PROTEIN 11-NOV-19 6UY3 TITLE STRUCTURE OF ANTI-HCD33 CONDITIONAL SCFV WITH METHOTREXATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CD33 CONDITIONAL SCFV; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELIDAE MIXED LIBRARY; SOURCE 3 ORGANISM_TAXID: 1579311; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CONDITIONAL CAR, MTX, CD33, CONDITIONAL ANTIBODY, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.R.KIMBERLIN,S.PARK REVDAT 3 11-OCT-23 6UY3 1 REMARK REVDAT 2 15-DEC-21 6UY3 1 JRNL REVDAT 1 18-NOV-20 6UY3 0 JRNL AUTH S.PARK,E.PASCUA,K.C.LINDQUIST,C.KIMBERLIN,X.DENG,Y.S.L.MAK, JRNL AUTH 2 Z.MELTON,T.O.JOHNSON,R.LIN,B.BOLDAJIPOUR,R.T.ABRAHAM,J.PONS, JRNL AUTH 3 B.J.SASU,T.J.VAN BLARCOM,J.CHAPARRO-RIGGERS JRNL TITL DIRECT CONTROL OF CAR T CELLS THROUGH SMALL JRNL TITL 2 MOLECULE-REGULATED ANTIBODIES. JRNL REF NAT COMMUN V. 12 710 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33514714 JRNL DOI 10.1038/S41467-020-20671-6 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.5000 - 3.6300 1.00 3107 170 0.1573 0.1772 REMARK 3 2 3.6300 - 2.8900 1.00 3049 137 0.1848 0.2372 REMARK 3 3 2.8900 - 2.5200 1.00 3029 141 0.2130 0.2384 REMARK 3 4 2.5200 - 2.2900 1.00 3003 145 0.2315 0.2660 REMARK 3 5 2.2900 - 2.1300 0.96 2836 161 0.2415 0.2932 REMARK 3 6 2.1300 - 2.0000 1.00 3025 150 0.2467 0.3083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.209 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.814 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1871 REMARK 3 ANGLE : 0.515 2540 REMARK 3 CHIRALITY : 0.042 265 REMARK 3 PLANARITY : 0.003 325 REMARK 3 DIHEDRAL : 5.971 1428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 59.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M CESIUM CHLORIDE, 15% W/V PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.49600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.49600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.49600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.49600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 59.49600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 59.49600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 59.49600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 59.49600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 59.49600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 59.49600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 59.49600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 59.49600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.49600 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 59.49600 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.49600 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.49600 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 59.49600 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 59.49600 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 59.49600 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 59.49600 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 59.49600 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 59.49600 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 59.49600 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 59.49600 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 59.49600 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 GLU A 140 REMARK 465 LEU A 141 REMARK 465 GLN A 142 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 GLY A 262 REMARK 465 SER A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CD OE1 NE2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 43 NZ REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 SER A 143 OG REMARK 470 LYS A 187 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 167 OG SER A 172 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 169 -86.44 -97.82 REMARK 500 ASN A 193 -45.89 73.01 REMARK 500 ALA A 232 -148.63 -145.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTX A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UUP RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3F12 RELATED DB: PDB REMARK 900 PARENTAL SCAFFOLD DBREF 6UY3 A 1 271 PDB 6UY3 6UY3 1 271 SEQRES 1 A 271 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 271 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER ARG SEQRES 3 A 271 ARG SER SER ARG SER TRP ALA MET HIS TRP VAL ARG GLN SEQRES 4 A 271 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE SER SEQRES 5 A 271 TYR ASP GLY ARG LEU LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 271 GLY ARG PHE THR ILE SER ARG ASP ASN ALA GLU TYR LEU SEQRES 7 A 271 VAL TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 271 ALA VAL TYR TYR CYS ALA ALA GLU GLU GLY ASP GLY GLY SEQRES 9 A 271 PHE PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 271 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 11 A 271 GLY GLY GLY SER GLY GLY GLY GLY SER GLU LEU GLN SER SEQRES 12 A 271 VAL LEU THR GLN PRO PRO SER ALA SER GLY THR PRO GLY SEQRES 13 A 271 GLN ARG VAL THR ILE SER CYS SER GLY SER SER SER ASN SEQRES 14 A 271 ILE GLY SER ASN TYR VAL ASN TRP TYR GLN GLN LEU PRO SEQRES 15 A 271 GLY THR ALA PRO LYS LEU LEU ILE TYR ARG ASN ASN GLU SEQRES 16 A 271 ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER LYS SEQRES 17 A 271 SER GLY THR SER ALA SER LEU ALA ILE SER GLY LEU ARG SEQRES 18 A 271 SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA TRP ASP SEQRES 19 A 271 GLY SER LEU SER GLY ARG GLY VAL PHE GLY THR GLY THR SEQRES 20 A 271 LYS LEU THR VAL LEU GLU ASN LEU TYR PHE GLN GLY GLY SEQRES 21 A 271 SER GLY SER HIS HIS HIS HIS HIS HIS HIS HIS HET PO4 A 301 5 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET MTX A 306 33 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM MTX METHOTREXATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 MTX C20 H22 N8 O5 FORMUL 8 HOH *149(H2 O) HELIX 1 AA1 ARG A 87 THR A 91 5 5 HELIX 2 AA2 ASN A 169 ASN A 173 5 5 HELIX 3 AA3 ARG A 221 GLU A 225 5 5 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 LEU A 18 ALA A 24 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 LEU A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N THR A 69 O GLN A 82 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 113 SER A 118 1 O THR A 116 N VAL A 12 SHEET 3 AA2 6 ALA A 92 GLU A 100 -1 N TYR A 94 O THR A 113 SHEET 4 AA2 6 TRP A 32 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 LYS A 58 TYR A 60 -1 O TYR A 59 N VAL A 50 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 113 SER A 118 1 O THR A 116 N VAL A 12 SHEET 3 AA3 4 ALA A 92 GLU A 100 -1 N TYR A 94 O THR A 113 SHEET 4 AA3 4 TYR A 108 TRP A 109 -1 O TYR A 108 N ALA A 98 SHEET 1 AA4 5 SER A 150 GLY A 153 0 SHEET 2 AA4 5 THR A 247 VAL A 251 1 O THR A 250 N ALA A 151 SHEET 3 AA4 5 ALA A 226 ASP A 234 -1 N ALA A 226 O LEU A 249 SHEET 4 AA4 5 ASN A 176 GLN A 180 -1 N GLN A 180 O ASP A 227 SHEET 5 AA4 5 LYS A 187 ILE A 190 -1 O ILE A 190 N TRP A 177 SHEET 1 AA5 4 SER A 150 GLY A 153 0 SHEET 2 AA5 4 THR A 247 VAL A 251 1 O THR A 250 N ALA A 151 SHEET 3 AA5 4 ALA A 226 ASP A 234 -1 N ALA A 226 O LEU A 249 SHEET 4 AA5 4 ARG A 240 PHE A 243 -1 O ARG A 240 N ASP A 234 SHEET 1 AA6 3 VAL A 159 SER A 164 0 SHEET 2 AA6 3 SER A 212 ILE A 217 -1 O ILE A 217 N VAL A 159 SHEET 3 AA6 3 PHE A 204 SER A 209 -1 N SER A 205 O ALA A 216 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.04 SSBOND 2 CYS A 163 CYS A 230 1555 1555 2.03 SITE 1 AC1 7 ASP A 102 LEU A 255 PHE A 257 GLN A 258 SITE 2 AC1 7 GLY A 259 HOH A 428 HOH A 469 SITE 1 AC2 5 GLN A 179 PRO A 201 PHE A 204 GLU A 223 SITE 2 AC2 5 ASP A 224 SITE 1 AC3 5 SER A 207 LYS A 208 SER A 209 ALA A 213 SITE 2 AC3 5 SER A 214 SITE 1 AC4 8 ALA A 33 SER A 52 TYR A 59 GLU A 99 SITE 2 AC4 8 ASP A 102 GLN A 258 HOH A 431 HOH A 454 SITE 1 AC5 6 GLY A 171 TYR A 174 ARG A 192 ASN A 193 SITE 2 AC5 6 LYS A 208 HOH A 419 SITE 1 AC6 18 VAL A 2 CYS A 22 ALA A 24 ARG A 26 SITE 2 AC6 18 ARG A 27 SER A 28 SER A 29 ARG A 30 SITE 3 AC6 18 TRP A 32 ARG A 72 ASP A 73 ASN A 74 SITE 4 AC6 18 TYR A 77 LEU A 78 VAL A 79 ALA A 98 SITE 5 AC6 18 GLU A 253 HOH A 480 CRYST1 118.992 118.992 118.992 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008404 0.00000