HEADER NUCLEAR PROTEIN/PROTEIN BINDING 14-NOV-19 6UYX TITLE CRYSTAL STRUCTURE OF K37-ACETYLATED SUMO1 IN COMPLEX WITH TITLE 2 PHOSPHORYLATED DAXX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, COMPND 5 UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, COMPND 6 SMT3C,UBIQUITIN-LIKE PROTEIN UBL1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHORYLATED DAXX; COMPND 11 CHAIN: D, B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUMO1, PML, SUMO INTERACTION MOTIF, PHOSPHOSIM, NUCLEAR PROTEIN- KEYWDS 2 PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.M.WAHBA,C.GAGNON,X.H.MASCLE,M.LUSSIER-PRICE,L.CAPPADOCIA, AUTHOR 2 K.SAKAGUCHI,J.G.OMICHINSKI REVDAT 6 15-NOV-23 6UYX 1 ATOM REVDAT 5 25-OCT-23 6UYX 1 REMARK REVDAT 4 22-FEB-23 6UYX 1 COMPND REMARK LINK SITE REVDAT 4 2 1 ATOM REVDAT 3 19-FEB-20 6UYX 1 JRNL REVDAT 2 08-JAN-20 6UYX 1 JRNL REVDAT 1 27-NOV-19 6UYX 0 JRNL AUTH X.H.MASCLE,C.GAGNON,H.M.WAHBA,M.LUSSIER-PRICE,L.CAPPADOCIA, JRNL AUTH 2 K.SAKAGUCHI,J.G.OMICHINSKI JRNL TITL ACETYLATION OF SUMO1 ALTERS INTERACTIONS WITH THE SIMS OF JRNL TITL 2 PML AND DAXX IN A PROTEIN-SPECIFIC MANNER. JRNL REF STRUCTURE V. 28 157 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 31879127 JRNL DOI 10.1016/J.STR.2019.11.019 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 58.610 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 18373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6940 - 3.9954 0.90 1343 142 0.1130 0.1822 REMARK 3 2 3.9954 - 3.1722 0.89 1313 150 0.1320 0.1884 REMARK 3 3 3.1722 - 2.7715 0.89 1334 147 0.1484 0.2308 REMARK 3 4 2.7715 - 2.5182 0.88 1297 141 0.1721 0.2154 REMARK 3 5 2.5182 - 2.3378 0.88 1299 150 0.1708 0.1984 REMARK 3 6 2.3378 - 2.2000 0.88 1286 143 0.1840 0.2351 REMARK 3 7 2.2000 - 2.0898 0.88 1311 143 0.1949 0.2101 REMARK 3 8 2.0898 - 1.9989 0.88 1254 140 0.2059 0.2470 REMARK 3 9 1.9989 - 1.9219 0.87 1278 139 0.2237 0.2436 REMARK 3 10 1.9219 - 1.8556 0.87 1302 145 0.2417 0.2685 REMARK 3 11 1.8556 - 1.7976 0.86 1239 141 0.2862 0.3136 REMARK 3 12 1.7976 - 1.7462 0.83 1220 133 0.3212 0.3543 REMARK 3 13 1.7462 - 1.7003 0.72 1052 120 0.3294 0.4227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: L,-K,H REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 25.2770 -11.4172 14.3394 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.1527 REMARK 3 T33: 0.1899 T12: -0.0115 REMARK 3 T13: -0.0221 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.3347 L22: 1.1331 REMARK 3 L33: 1.2061 L12: 0.7769 REMARK 3 L13: 0.5588 L23: 0.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.0027 S13: -0.0457 REMARK 3 S21: 0.0193 S22: -0.0062 S23: -0.0133 REMARK 3 S31: 0.0292 S32: 0.0158 S33: 0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 35.8105 -7.3045 17.4531 REMARK 3 T TENSOR REMARK 3 T11: 0.1894 T22: 0.1715 REMARK 3 T33: 0.2011 T12: 0.0045 REMARK 3 T13: -0.0702 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.1460 L22: 0.2046 REMARK 3 L33: 0.3351 L12: 0.0508 REMARK 3 L13: -0.1556 L23: 0.1270 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: 0.1388 S13: -0.1674 REMARK 3 S21: 0.0129 S22: 0.0422 S23: -0.0843 REMARK 3 S31: -0.1033 S32: 0.1972 S33: 0.0101 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 14.4514 4.4335 -1.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.1655 REMARK 3 T33: 0.1548 T12: 0.0060 REMARK 3 T13: -0.0128 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.9706 L22: 1.1434 REMARK 3 L33: 1.5677 L12: 0.2519 REMARK 3 L13: 0.1625 L23: -0.9221 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0487 S13: 0.0134 REMARK 3 S21: 0.0486 S22: -0.0005 S23: 0.0372 REMARK 3 S31: -0.0603 S32: -0.0390 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 12.8882 -1.1853 9.9059 REMARK 3 T TENSOR REMARK 3 T11: 0.2712 T22: 0.1851 REMARK 3 T33: 0.2474 T12: -0.0014 REMARK 3 T13: -0.0424 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.2254 L22: 0.2057 REMARK 3 L33: 0.2609 L12: -0.1877 REMARK 3 L13: 0.1111 L23: -0.1419 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: -0.0432 S13: 0.0585 REMARK 3 S21: 0.4284 S22: -0.2099 S23: -0.0189 REMARK 3 S31: -0.2070 S32: -0.2350 S33: 0.0030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN C AND RESID 19 THROUGH 95) REMARK 3 ATOM PAIRS NUMBER : 765 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND RESID 7 THROUGH 15) REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 0 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000244146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97750 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18373 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 31.694 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WJN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE PH6.5, 26% REMARK 280 PEG3350, 10MM CALCIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.72600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 LYS C 17 REMARK 465 GLU C 18 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 GLY D 5 REMARK 465 GLU D 6 REMARK 465 ASP D 16 REMARK 465 SEP D 17 REMARK 465 ASP D 18 REMARK 465 TYR D 19 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 SEP B 17 REMARK 465 ASP B 18 REMARK 465 TYR B 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS C 78 O HOH C 101 1.40 REMARK 500 HZ3 LYS A 23 O HOH A 104 1.46 REMARK 500 HG1 THR A 42 O HOH A 108 1.48 REMARK 500 HE22 GLN C 92 O HOH C 108 1.49 REMARK 500 O PRO A 58 HG SER A 61 1.52 REMARK 500 HZ3 LYS A 39 O HOH A 109 1.52 REMARK 500 HE21 GLN A 94 O HOH A 106 1.60 REMARK 500 O LEU B 14 O HOH B 101 1.84 REMARK 500 O GLY A 19 O HOH A 101 1.86 REMARK 500 NZ LYS C 78 O HOH C 101 1.89 REMARK 500 OG SER A 31 O HOH A 102 1.92 REMARK 500 O HOH C 108 O HOH C 130 1.94 REMARK 500 O MET C 59 O HOH C 102 1.96 REMARK 500 O LYS A 48 O HOH A 103 1.98 REMARK 500 NZ LYS A 23 O HOH A 104 2.00 REMARK 500 O GLU A 85 O HOH A 105 2.01 REMARK 500 O HOH A 121 O HOH A 147 2.02 REMARK 500 NE2 GLN A 94 O HOH A 106 2.03 REMARK 500 OG SER A 31 O HOH A 107 2.07 REMARK 500 O GLY C 97 O HOH C 103 2.09 REMARK 500 OE2 GLU B 9 O HOH A 104 2.09 REMARK 500 OG1 THR A 42 O HOH A 108 2.10 REMARK 500 O HOH D 201 O HOH D 206 2.10 REMARK 500 OE1 GLU C 79 O HOH C 104 2.12 REMARK 500 NZ LYS A 39 O HOH A 109 2.12 REMARK 500 OD1 ASP C 86 O HOH C 105 2.14 REMARK 500 OD1 ASN C 74 O HOH C 106 2.14 REMARK 500 O TYR A 21 O HOH A 110 2.15 REMARK 500 N GLY C 19 O HOH C 107 2.18 REMARK 500 O HOH A 111 O HOH A 118 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 137 O HOH A 113 2655 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU D 14 C LEU D 14 O -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 16.64 51.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WJQ RELATED DB: PDB REMARK 900 RELATED ID: 4WJP RELATED DB: PDB REMARK 900 RELATED ID: 4WJO RELATED DB: PDB REMARK 900 RELATED ID: 4WJN RELATED DB: PDB DBREF 6UYX C 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 6UYX D 3 19 PDB 6UYX 6UYX 3 19 DBREF 6UYX A 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 6UYX B 3 19 PDB 6UYX 6UYX 3 19 SEQADV 6UYX GLY C 15 UNP P63165 EXPRESSION TAG SEQADV 6UYX SER C 16 UNP P63165 EXPRESSION TAG SEQADV 6UYX ALA C 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQADV 6UYX GLY A 15 UNP P63165 EXPRESSION TAG SEQADV 6UYX SER A 16 UNP P63165 EXPRESSION TAG SEQADV 6UYX ALA A 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQRES 1 C 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 C 83 GLY GLN ASP SER SER GLU ILE HIS PHE ALY VAL LYS MET SEQRES 3 C 83 THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR ALA GLN SEQRES 4 C 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 C 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 C 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 C 83 GLU GLN THR GLY GLY SEQRES 1 D 17 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE VAL LEU SEP SEQRES 2 D 17 ASP SEP ASP TYR SEQRES 1 A 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 A 83 GLY GLN ASP SER SER GLU ILE HIS PHE ALY VAL LYS MET SEQRES 3 A 83 THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR ALA GLN SEQRES 4 A 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 A 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 A 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 A 83 GLU GLN THR GLY GLY SEQRES 1 B 17 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE VAL LEU SEP SEQRES 2 B 17 ASP SEP ASP TYR MODRES 6UYX ALY C 37 LYS MODIFIED RESIDUE MODRES 6UYX ALY A 37 LYS MODIFIED RESIDUE HET ALY C 37 25 HET SEP D 15 13 HET ALY A 37 25 HET SEP B 15 13 HETNAM ALY N(6)-ACETYLLYSINE HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 ALY 2(C8 H16 N2 O3) FORMUL 2 SEP 2(C3 H8 N O6 P) FORMUL 5 HOH *136(H2 O) HELIX 1 AA1 LEU C 44 GLN C 55 1 12 HELIX 2 AA2 PRO C 58 ASN C 60 5 3 HELIX 3 AA3 THR C 76 GLY C 81 1 6 HELIX 4 AA4 LEU A 44 GLY A 56 1 13 HELIX 5 AA5 PRO A 58 ASN A 60 5 3 HELIX 6 AA6 THR A 76 GLY A 81 1 6 SHEET 1 AA1 6 GLN C 69 ARG C 70 0 SHEET 2 AA1 6 LEU C 62 PHE C 66 -1 N PHE C 66 O GLN C 69 SHEET 3 AA1 6 VAL C 87 GLN C 92 -1 O GLU C 89 N LEU C 65 SHEET 4 AA1 6 TYR C 21 ILE C 27 1 N LYS C 25 O ILE C 88 SHEET 5 AA1 6 GLU C 33 LYS C 39 -1 O VAL C 38 N ILE C 22 SHEET 6 AA1 6 ILE D 11 VAL D 13 1 O ILE D 12 N HIS C 35 SHEET 1 AA2 6 GLN A 69 ARG A 70 0 SHEET 2 AA2 6 LEU A 62 PHE A 66 -1 N PHE A 66 O GLN A 69 SHEET 3 AA2 6 VAL A 87 GLN A 92 -1 O TYR A 91 N ARG A 63 SHEET 4 AA2 6 TYR A 21 ILE A 27 1 N ILE A 27 O ILE A 88 SHEET 5 AA2 6 GLU A 33 LYS A 39 -1 O PHE A 36 N LEU A 24 SHEET 6 AA2 6 ILE B 11 VAL B 13 1 O ILE B 12 N ALY A 37 LINK C PHE C 36 N ALY C 37 1555 1555 1.32 LINK C ALY C 37 N VAL C 38 1555 1555 1.34 LINK C LEU D 14 N SEP D 15 1555 1555 1.30 LINK C PHE A 36 N ALY A 37 1555 1555 1.32 LINK C ALY A 37 N VAL A 38 1555 1555 1.33 LINK C LEU B 14 N SEP B 15 1555 1555 1.32 LINK C SEP B 15 N ASP B 16 1555 1555 1.33 CRYST1 34.292 81.452 34.284 90.00 112.41 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029161 0.000000 0.012027 0.00000 SCALE2 0.000000 0.012277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.031552 0.00000