HEADER NUCLEAR PROTEIN/PROTEIN BINDING 14-NOV-19 6UYZ TITLE CRYSTAL STRUCTURE OF K46-ACETYLATED SUMO1 IN COMPLEX WITH TITLE 2 PHOSPHORYLATED DAXX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, COMPND 5 UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, COMPND 6 SMT3C,UBIQUITIN-LIKE PROTEIN UBL1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHORYLATED DAXX; COMPND 11 CHAIN: B, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUMO1, PML, SUMO INTERACTION MOTIF, PHOSPHOSIM, NUCLEAR PROTEIN- KEYWDS 2 PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.M.WAHBA,C.GAGNON,X.H.MASCLE,M.LUSSIER-PRICE,L.CAPPADOCIA, AUTHOR 2 K.SAKAGUCHI,J.G.OMICHINSKI REVDAT 7 16-OCT-24 6UYZ 1 REMARK REVDAT 6 15-NOV-23 6UYZ 1 ATOM REVDAT 5 25-OCT-23 6UYZ 1 REMARK REVDAT 4 22-FEB-23 6UYZ 1 COMPND SOURCE REMARK LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 19-FEB-20 6UYZ 1 JRNL REVDAT 2 08-JAN-20 6UYZ 1 JRNL REVDAT 1 27-NOV-19 6UYZ 0 JRNL AUTH X.H.MASCLE,C.GAGNON,H.M.WAHBA,M.LUSSIER-PRICE,L.CAPPADOCIA, JRNL AUTH 2 K.SAKAGUCHI,J.G.OMICHINSKI JRNL TITL ACETYLATION OF SUMO1 ALTERS INTERACTIONS WITH THE SIMS OF JRNL TITL 2 PML AND DAXX IN A PROTEIN-SPECIFIC MANNER. JRNL REF STRUCTURE V. 28 157 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 31879127 JRNL DOI 10.1016/J.STR.2019.11.019 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 41054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2750 - 3.3727 0.99 3092 158 0.1502 0.1688 REMARK 3 2 3.3727 - 2.6771 0.99 3015 155 0.1541 0.1760 REMARK 3 3 2.6771 - 2.3387 0.99 2999 153 0.1456 0.1535 REMARK 3 4 2.3387 - 2.1249 0.99 2979 152 0.1393 0.1743 REMARK 3 5 2.1249 - 1.9726 0.98 2980 152 0.1393 0.1617 REMARK 3 6 1.9726 - 1.8563 0.98 2924 150 0.1432 0.1708 REMARK 3 7 1.8563 - 1.7633 0.98 2979 152 0.1572 0.1897 REMARK 3 8 1.7633 - 1.6865 0.98 2919 150 0.1674 0.1993 REMARK 3 9 1.6865 - 1.6216 0.97 2912 149 0.1800 0.1905 REMARK 3 10 1.6216 - 1.5656 0.97 2904 149 0.1876 0.2237 REMARK 3 11 1.5656 - 1.5167 0.96 2881 147 0.2080 0.2374 REMARK 3 12 1.5167 - 1.4733 0.90 2684 136 0.2320 0.2603 REMARK 3 13 1.4733 - 1.4345 0.73 2181 113 0.2744 0.3036 REMARK 3 14 1.4345 - 1.4000 0.54 1607 82 0.2935 0.2774 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 104.8935 -2.7294 22.4112 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0802 REMARK 3 T33: 0.0693 T12: 0.0000 REMARK 3 T13: -0.0067 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.0841 L22: 1.4801 REMARK 3 L33: 1.9269 L12: 0.3084 REMARK 3 L13: -0.0549 L23: 0.1826 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0016 S13: 0.0044 REMARK 3 S21: 0.0044 S22: 0.0007 S23: 0.0036 REMARK 3 S31: 0.0076 S32: -0.0700 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 101.7672 4.5813 32.9026 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.1411 REMARK 3 T33: 0.1718 T12: 0.0236 REMARK 3 T13: -0.0146 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.3435 L22: 0.3336 REMARK 3 L33: 0.1981 L12: 0.3149 REMARK 3 L13: 0.1226 L23: 0.0291 REMARK 3 S TENSOR REMARK 3 S11: 0.1082 S12: -0.1283 S13: -0.1538 REMARK 3 S21: 0.2607 S22: -0.0809 S23: -0.1091 REMARK 3 S31: 0.0303 S32: -0.2024 S33: 0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 117.1061 -5.5833 0.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0714 REMARK 3 T33: 0.0966 T12: 0.0013 REMARK 3 T13: 0.0038 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.4811 L22: 1.2020 REMARK 3 L33: 1.4756 L12: -0.3028 REMARK 3 L13: -0.0768 L23: -0.1687 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.0121 S13: -0.0231 REMARK 3 S21: 0.0015 S22: 0.0108 S23: 0.0028 REMARK 3 S31: -0.0079 S32: -0.0197 S33: 0.0014 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 122.8121 -13.6916 -7.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.1328 REMARK 3 T33: 0.1924 T12: 0.0056 REMARK 3 T13: -0.0062 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.1130 L22: 0.2641 REMARK 3 L33: 0.1797 L12: -0.1386 REMARK 3 L13: 0.0007 L23: -0.0553 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: 0.0813 S13: -0.2239 REMARK 3 S21: -0.1562 S22: -0.0914 S23: -0.1661 REMARK 3 S31: 0.0206 S32: 0.0511 S33: -0.0013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000244147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.275 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WJN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CACODYLATE PH6.5, 26% REMARK 280 PEG3350, 10MM CALCIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.11200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.15800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.11200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.15800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 97 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 SEP B 15 REMARK 465 ASP B 16 REMARK 465 SEP B 17 REMARK 465 ASP B 18 REMARK 465 TYR B 19 REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 GLY C 96 REMARK 465 GLY C 97 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 GLY D 5 REMARK 465 GLU D 6 REMARK 465 ASP D 16 REMARK 465 SEP D 17 REMARK 465 ASP D 18 REMARK 465 TYR D 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 29 OE1 GLN A 92 1.54 REMARK 500 HH12 ARG C 54 O HOH C 108 1.56 REMARK 500 O HOH B 105 O HOH B 108 1.82 REMARK 500 O HOH C 104 O HOH C 196 1.87 REMARK 500 OE1 GLU C 49 O HOH C 101 1.90 REMARK 500 O HOH A 115 O HOH A 118 1.91 REMARK 500 O HOH A 133 O HOH C 103 1.96 REMARK 500 N LYS C 17 O HOH C 102 1.98 REMARK 500 N ALA B 7 O HOH B 101 2.00 REMARK 500 O HOH A 102 O HOH A 133 2.00 REMARK 500 O HOH A 136 O HOH A 198 2.07 REMARK 500 O HOH C 115 O HOH C 199 2.11 REMARK 500 O HOH C 106 O HOH C 207 2.12 REMARK 500 OE1 GLN A 94 O HOH A 101 2.12 REMARK 500 OE2 GLU A 93 O HOH A 102 2.14 REMARK 500 OE2 GLU C 93 O HOH C 103 2.15 REMARK 500 O HOH C 132 O HOH C 135 2.16 REMARK 500 OE2 GLU C 67 O HOH C 104 2.16 REMARK 500 O HOH A 124 O HOH A 161 2.17 REMARK 500 O HOH C 140 O HOH C 172 2.17 REMARK 500 OE1 GLN A 94 O HOH A 103 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 108 O HOH C 158 4745 1.96 REMARK 500 O HOH A 106 O HOH A 151 4756 1.98 REMARK 500 O HOH C 154 O HOH C 212 4755 2.05 REMARK 500 O HOH A 201 O HOH A 224 4756 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 14 CA - C - N ANGL. DEV. = 20.4 DEGREES REMARK 500 LEU D 14 O - C - N ANGL. DEV. = -25.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 31 1.84 80.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU D 14 18.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WJQ RELATED DB: PDB REMARK 900 RELATED ID: 4WJP RELATED DB: PDB REMARK 900 RELATED ID: 4WJO RELATED DB: PDB REMARK 900 RELATED ID: 4WJN RELATED DB: PDB DBREF 6UYZ A 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 6UYZ B 3 19 PDB 6UYZ 6UYZ 3 19 DBREF 6UYZ C 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 6UYZ D 3 19 PDB 6UYZ 6UYZ 3 19 SEQADV 6UYZ GLY A 15 UNP P63165 EXPRESSION TAG SEQADV 6UYZ SER A 16 UNP P63165 EXPRESSION TAG SEQADV 6UYZ ALA A 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQADV 6UYZ GLY C 15 UNP P63165 EXPRESSION TAG SEQADV 6UYZ SER C 16 UNP P63165 EXPRESSION TAG SEQADV 6UYZ ALA C 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQRES 1 A 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 A 83 GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS MET SEQRES 3 A 83 THR THR HIS LEU LYS ALY LEU LYS GLU SER TYR ALA GLN SEQRES 4 A 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 A 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 A 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 A 83 GLU GLN THR GLY GLY SEQRES 1 B 17 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE VAL LEU SEP SEQRES 2 B 17 ASP SEP ASP TYR SEQRES 1 C 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 C 83 GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS MET SEQRES 3 C 83 THR THR HIS LEU LYS ALY LEU LYS GLU SER TYR ALA GLN SEQRES 4 C 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 C 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 C 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 C 83 GLU GLN THR GLY GLY SEQRES 1 D 17 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE VAL LEU SEP SEQRES 2 D 17 ASP SEP ASP TYR MODRES 6UYZ ALY A 46 LYS MODIFIED RESIDUE MODRES 6UYZ ALY C 46 LYS MODIFIED RESIDUE HET ALY A 46 26 HET ALY C 46 26 HET SEP D 15 13 HETNAM ALY N(6)-ACETYLLYSINE HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 ALY 2(C8 H16 N2 O3) FORMUL 4 SEP C3 H8 N O6 P FORMUL 5 HOH *298(H2 O) HELIX 1 AA1 LEU A 44 GLY A 56 1 13 HELIX 2 AA2 PRO A 58 ASN A 60 5 3 HELIX 3 AA3 THR A 76 GLY A 81 1 6 HELIX 4 AA4 LYS C 17 GLY C 19 5 3 HELIX 5 AA5 LEU C 44 GLY C 56 1 13 HELIX 6 AA6 PRO C 58 ASN C 60 5 3 HELIX 7 AA7 THR C 76 GLY C 81 1 6 SHEET 1 AA1 6 GLN A 69 ARG A 70 0 SHEET 2 AA1 6 LEU A 62 PHE A 66 -1 N PHE A 66 O GLN A 69 SHEET 3 AA1 6 VAL A 87 GLN A 92 -1 O GLU A 89 N LEU A 65 SHEET 4 AA1 6 TYR A 21 ILE A 27 1 N ILE A 27 O ILE A 88 SHEET 5 AA1 6 GLU A 33 LYS A 39 -1 O PHE A 36 N LEU A 24 SHEET 6 AA1 6 ILE B 11 VAL B 13 1 O ILE B 12 N HIS A 35 SHEET 1 AA2 6 GLN C 69 ARG C 70 0 SHEET 2 AA2 6 LEU C 62 PHE C 66 -1 N PHE C 66 O GLN C 69 SHEET 3 AA2 6 VAL C 87 GLN C 92 -1 O GLU C 89 N LEU C 65 SHEET 4 AA2 6 TYR C 21 ILE C 27 1 N LYS C 25 O ILE C 88 SHEET 5 AA2 6 GLU C 33 LYS C 39 -1 O PHE C 36 N LEU C 24 SHEET 6 AA2 6 ILE D 11 VAL D 13 1 O ILE D 12 N LYS C 37 LINK C LYS A 45 N ALY A 46 1555 1555 1.33 LINK C ALY A 46 N LEU A 47 1555 1555 1.32 LINK C LYS C 45 N ALY C 46 1555 1555 1.34 LINK C ALY C 46 N LEU C 47 1555 1555 1.31 LINK C LEU D 14 N SEP D 15 1555 1555 1.43 CRYST1 100.224 38.316 67.721 90.00 119.91 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009978 0.000000 0.005739 0.00000 SCALE2 0.000000 0.026099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017035 0.00000