HEADER PROTEIN BINDING 14-NOV-19 6UZ4 TITLE SOLUTION STRUCTURE OF AGL55-KRINGLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: THE TERMINAL RESIDUES, YVEFSEE AND AA, ARE NOT DERIVED COMPND 8 FROM KRINGLE 2 DOMAIN OF HUMAN PLASMINOGEN.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: M PROTEIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: AGL55; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLG; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES NS88.2; SOURCE 10 ORGANISM_TAXID: 1138874; SOURCE 11 STRAIN: NS88.2; SOURCE 12 GENE: EMM; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PLASMINOGEN BINDING PEPTIDE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.QIU,Y.YUAN,F.J.CASTELLINO REVDAT 2 20-NOV-24 6UZ4 1 REMARK REVDAT 1 09-DEC-20 6UZ4 0 JRNL AUTH C.QIU,Y.YUAN,V.A.PLOPLIS,F.J.CASTELLINO JRNL TITL STRUCTURAL EVOLUTION OF THE A-DOMAIN IN PLASMINOGEN-BINDING JRNL TITL 2 GROUP A STREPTOCOCCAL M-PROTEIN REFLECTS IMPROVED JRNL TITL 3 ADAPTABILITY OF THE PATHOGEN TO THE HOST JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, HADDOCK REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245461. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 AGL55, 1.2 MM KRINGLE 2, 20 MM REMARK 210 [U-2H] BIS-TRIS-D19, 2 UG/ML DSS, REMARK 210 2 UG/ML SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O; 1.0 MM [U-99% 13C; U-99% REMARK 210 15N] KRINGLE 2, 1.2 MM AGL55, 20 REMARK 210 MM [U-2H] BIS-TRIS-D19, 2 UG/ML REMARK 210 DSS, 2 UG/ML SODIUM AZIDE, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TROSY-[1H-15N] HSQC; 3D TROSY REMARK 210 -HNCO; 3D TROSY-HN(CA)CO; 3D REMARK 210 TROSY-HNCACB; 3D TROSY-C(CO)NH; REMARK 210 3D TROSY-HBHA(CBCA)NH; 3D TROSY- REMARK 210 H(CCO)NH; 2D NOESY; 3D NOESY; 2D REMARK 210 IPAP; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 TYR A -7 REMARK 465 VAL A -6 REMARK 465 GLU A -5 REMARK 465 PHE A -4 REMARK 465 SER A -3 REMARK 465 ALA A 244 REMARK 465 ALA A 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 121 HZ3 LYS B 124 1.59 REMARK 500 OD1 ASP A 219 HE1 TRP A 225 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 200 57.58 -90.72 REMARK 500 1 LYS A 212 -118.03 48.50 REMARK 500 1 ASP B 138 73.68 61.01 REMARK 500 2 LYS A 212 -114.45 50.99 REMARK 500 3 ASN A 173 45.13 -88.39 REMARK 500 3 ASP A 175 57.17 -143.63 REMARK 500 3 LYS A 212 -119.27 54.50 REMARK 500 3 ASP B 138 84.96 54.49 REMARK 500 3 LYS B 139 -75.43 -84.58 REMARK 500 4 LYS A 212 -114.45 50.99 REMARK 500 5 ASN A 173 45.13 -88.39 REMARK 500 5 ASP A 175 57.17 -143.63 REMARK 500 5 LYS A 212 -119.27 54.50 REMARK 500 5 ASP B 138 84.96 54.49 REMARK 500 5 LYS B 139 -75.43 -84.58 REMARK 500 6 LYS A 212 -118.91 51.90 REMARK 500 6 ARG A 234 -72.27 -64.52 REMARK 500 7 LYS A 212 -112.80 49.14 REMARK 500 7 LYS B 139 -79.75 -78.15 REMARK 500 8 ASP A 175 46.29 -140.86 REMARK 500 8 TYR A 200 52.77 -91.13 REMARK 500 8 LYS A 212 -112.34 50.93 REMARK 500 8 GLU B 103 75.67 51.41 REMARK 500 8 LEU B 115 -2.00 69.50 REMARK 500 8 ASP B 138 76.34 54.52 REMARK 500 8 ASP B 144 -73.38 -100.90 REMARK 500 8 ARG B 148 63.05 62.91 REMARK 500 9 ASN A 173 38.82 -92.50 REMARK 500 9 TYR A 200 57.69 -93.35 REMARK 500 9 LYS A 212 -115.17 50.01 REMARK 500 9 ASP B 138 82.34 53.23 REMARK 500 10 GLU A -1 31.86 -97.55 REMARK 500 10 TYR A 200 55.22 -94.09 REMARK 500 10 LYS A 212 -114.62 50.56 REMARK 500 10 ARG B 102 -19.41 70.88 REMARK 500 11 LYS A 212 -122.63 51.75 REMARK 500 11 ASP A 221 -75.60 -68.72 REMARK 500 11 LEU A 222 -67.70 -159.91 REMARK 500 11 ASP B 138 95.07 61.17 REMARK 500 11 LYS B 139 -75.48 -115.62 REMARK 500 12 LYS A 212 -125.82 55.54 REMARK 500 12 SER B -1 32.96 -144.50 REMARK 500 13 LYS A 212 -121.35 49.43 REMARK 500 13 LYS B 139 -74.33 -56.01 REMARK 500 14 LYS A 212 -112.63 50.74 REMARK 500 14 LEU B 97 -60.78 -133.22 REMARK 500 15 LYS A 212 -119.57 49.08 REMARK 500 15 ASN B 116 85.29 61.37 REMARK 500 15 GLU B 117 -60.26 -94.43 REMARK 500 15 ASP B 144 -62.12 -97.34 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30389 RELATED DB: BMRB REMARK 900 RELATED ID: 6BZJ RELATED DB: PDB REMARK 900 RELATED ID: 30686 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF AGL55-KRINGLE 2 COMPLEX DBREF 6UZ4 A 166 243 UNP P00747 PLMN_HUMAN 185 262 DBREF 6UZ4 B 95 149 UNP M4I022 M4I022_STRPY 54 108 SEQADV 6UZ4 TYR A -7 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 VAL A -6 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 GLU A -5 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 PHE A -4 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 SER A -3 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 GLU A -2 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 GLU A -1 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 GLY A 169 UNP P00747 CYS 188 ENGINEERED MUTATION SEQADV 6UZ4 ASP A 221 UNP P00747 GLU 240 ENGINEERED MUTATION SEQADV 6UZ4 TYR A 237 UNP P00747 LEU 256 ENGINEERED MUTATION SEQADV 6UZ4 ALA A 244 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 ALA A 245 UNP P00747 EXPRESSION TAG SEQADV 6UZ4 GLY B -2 UNP M4I022 EXPRESSION TAG SEQADV 6UZ4 SER B -1 UNP M4I022 EXPRESSION TAG SEQRES 1 A 87 TYR VAL GLU PHE SER GLU GLU CYS MET HIS GLY SER GLY SEQRES 2 A 87 GLU ASN TYR ASP GLY LYS ILE SER LYS THR MET SER GLY SEQRES 3 A 87 LEU GLU CYS GLN ALA TRP ASP SER GLN SER PRO HIS ALA SEQRES 4 A 87 HIS GLY TYR ILE PRO SER LYS PHE PRO ASN LYS ASN LEU SEQRES 5 A 87 LYS LYS ASN TYR CYS ARG ASN PRO ASP ARG ASP LEU ARG SEQRES 6 A 87 PRO TRP CYS PHE THR THR ASP PRO ASN LYS ARG TRP GLU SEQRES 7 A 87 TYR CYS ASP ILE PRO ARG CYS ALA ALA SEQRES 1 B 57 GLY SER ALA GLY LEU GLN GLU LYS GLU ARG GLU LEU GLU SEQRES 2 B 57 ASP LEU LYS ASP ALA GLU LEU LYS ARG LEU ASN GLU GLU SEQRES 3 B 57 ARG HIS ASP HIS ASP LYS ARG GLU ALA GLU ARG LYS ALA SEQRES 4 B 57 LEU GLU ASP LYS LEU ALA ASP LYS GLN GLU HIS LEU ASP SEQRES 5 B 57 GLY ALA LEU ARG TYR HELIX 1 AA1 PHE A 205 ASN A 209 5 5 HELIX 2 AA2 GLY B 96 ARG B 102 1 7 HELIX 3 AA3 GLU B 103 LEU B 115 1 13 HELIX 4 AA4 ASN B 116 ASP B 138 1 23 SHEET 1 AA1 2 TRP A 225 PHE A 227 0 SHEET 2 AA1 2 TRP A 235 TYR A 237 -1 O GLU A 236 N CYS A 226 SSBOND 1 CYS A 166 CYS A 243 1555 1555 2.03 SSBOND 2 CYS A 187 CYS A 226 1555 1555 2.03 SSBOND 3 CYS A 215 CYS A 238 1555 1555 2.03 CISPEP 1 SER A 194 PRO A 195 1 0.27 CISPEP 2 SER A 194 PRO A 195 2 0.26 CISPEP 3 SER A 194 PRO A 195 3 0.85 CISPEP 4 SER A 194 PRO A 195 4 0.26 CISPEP 5 SER A 194 PRO A 195 5 0.85 CISPEP 6 SER A 194 PRO A 195 6 0.66 CISPEP 7 SER A 194 PRO A 195 7 0.52 CISPEP 8 SER A 194 PRO A 195 8 0.29 CISPEP 9 SER A 194 PRO A 195 9 0.44 CISPEP 10 SER A 194 PRO A 195 10 0.57 CISPEP 11 SER A 194 PRO A 195 11 0.79 CISPEP 12 SER A 194 PRO A 195 12 0.60 CISPEP 13 SER A 194 PRO A 195 13 -0.02 CISPEP 14 SER A 194 PRO A 195 14 0.66 CISPEP 15 SER A 194 PRO A 195 15 0.73 CISPEP 16 SER A 194 PRO A 195 16 0.34 CISPEP 17 SER A 194 PRO A 195 17 0.27 CISPEP 18 SER A 194 PRO A 195 18 0.34 CISPEP 19 SER A 194 PRO A 195 19 0.56 CISPEP 20 SER A 194 PRO A 195 20 0.11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1