HEADER SPLICING/TRANSFERASE 19-NOV-19 6V0P TITLE PRMT5 COMPLEX BOUND TO COVALENT PBM INHIBITOR BRD6711 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 72 KDA ICLN-BINDING PROTEIN,HISTONE-ARGININE N- COMPND 5 METHYLTRANSFERASE PRMT5,JAK-BINDING PROTEIN 1,SHK1 KINASE-BINDING COMPND 6 PROTEIN 1 HOMOLOG,SKB1HS; COMPND 7 EC: 2.1.1.320; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: METHYLOSOME PROTEIN 50; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: MEP-50,ANDROGEN RECEPTOR COFACTOR P44,WD REPEAT-CONTAINING COMPND 13 PROTEIN 77,P44/MEP50; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT5, HRMT1L5, IBP72, JBP1, SKB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: WDR77, MEP50, WD45, HKMT1069, NBLA10071; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS METHYLTRANSFERASE, SPLICING, SDMA, EPIGENETIC, SPLICING-TRANSFERASE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.J.MCMILLAN,D.C.MCKINNEY REVDAT 3 11-OCT-23 6V0P 1 REMARK REVDAT 2 08-DEC-21 6V0P 1 JRNL REMARK REVDAT 1 25-NOV-20 6V0P 0 JRNL AUTH D.C.MCKINNEY,B.J.MCMILLAN,M.J.RANAGHAN,J.A.MOROCO, JRNL AUTH 2 M.BROUSSEAU,Z.MULLIN-BERNSTEIN,M.O'KEEFE,P.MCCARREN, JRNL AUTH 3 M.F.MESLEH,K.M.MULVANEY,F.ROBINSON,R.SINGH,B.BAJRAMI, JRNL AUTH 4 F.F.WAGNER,R.HILGRAF,M.J.DRYSDALE,A.J.CAMPBELL,A.SKEPNER, JRNL AUTH 5 D.E.TIMM,D.PORTER,V.K.KAUSHIK,W.R.SELLERS,A.IANARI JRNL TITL DISCOVERY OF A FIRST-IN-CLASS INHIBITOR OF THE JRNL TITL 2 PRMT5-SUBSTRATE ADAPTOR INTERACTION. JRNL REF J.MED.CHEM. V. 64 11148 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34342224 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00507 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 50976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 637 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7545 ; NULL ; NULL REMARK 3 BOND ANGLES : 10282 ; NULL ; NULL REMARK 3 TORSION ANGLES : 4516 ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1355 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : 1131 ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.61 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GQB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG3350 200 MM AMMONIUM SULFATE REMARK 280 0.05% W/V DDM, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.55500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.28500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.21500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.55500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.28500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.21500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.55500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.28500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.21500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.55500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.28500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.21500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 132500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -138.57000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -138.57000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 HIS A 272 REMARK 465 SER A 273 REMARK 465 GLU A 274 REMARK 465 LYS A 275 REMARK 465 PRO B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 PRO B 6 REMARK 465 PRO B 7 REMARK 465 PRO B 8 REMARK 465 LEU B 9 REMARK 465 VAL B 10 REMARK 465 PRO B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 ARG B 15 REMARK 465 GLU B 16 REMARK 465 TRP B 17 REMARK 465 ASN B 18 REMARK 465 LEU B 19 REMARK 465 PRO B 20 REMARK 465 PRO B 21 REMARK 465 ASN B 22 REMARK 465 ALA B 23 REMARK 465 PRO B 24 REMARK 465 ALA B 25 REMARK 465 CYS B 26 REMARK 465 GLY B 207 REMARK 465 CYS B 208 REMARK 465 SER B 209 REMARK 465 ALA B 210 REMARK 465 THR B 245 REMARK 465 SER B 246 REMARK 465 CYS B 247 REMARK 465 THR B 329 REMARK 465 GLU B 330 REMARK 465 PRO B 331 REMARK 465 LEU B 332 REMARK 465 PRO B 333 REMARK 465 ALA B 334 REMARK 465 PRO B 335 REMARK 465 GLY B 336 REMARK 465 PRO B 337 REMARK 465 ALA B 338 REMARK 465 SER B 339 REMARK 465 VAL B 340 REMARK 465 THR B 341 REMARK 465 GLU B 342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 146 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 286 CA CB CG CD1 CD2 CE1 CE2 REMARK 480 TYR A 286 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 35.36 -94.07 REMARK 500 HIS A 143 33.39 -91.00 REMARK 500 ALA A 171 72.26 -154.05 REMARK 500 TRP A 221 0.10 -67.50 REMARK 500 PHE A 277 -53.35 60.81 REMARK 500 LYS A 354 -58.45 -22.98 REMARK 500 GLU A 408 -58.93 -131.61 REMARK 500 ALA A 441 -71.69 66.81 REMARK 500 LEU A 445 38.29 75.24 REMARK 500 SER A 477 99.12 -162.96 REMARK 500 HIS A 507 -62.23 -131.35 REMARK 500 CYS A 518 -80.38 -105.33 REMARK 500 GLU A 543 32.25 -99.72 REMARK 500 THR A 546 -174.29 -171.64 REMARK 500 GLN A 561 -102.80 50.68 REMARK 500 TRP B 54 68.73 -108.18 REMARK 500 ALA B 55 -169.69 -110.70 REMARK 500 SER B 135 -38.88 -38.80 REMARK 500 ILE B 147 0.07 83.35 REMARK 500 ARG B 164 73.56 -100.83 REMARK 500 CYS B 278 8.30 81.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1268 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1269 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 565 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 566 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 567 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 568 DISTANCE = 6.35 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QN4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 706 DBREF 6V0P A 1 637 UNP O14744 ANM5_HUMAN 1 637 DBREF 6V0P B 2 342 UNP Q9BQA1 MEP50_HUMAN 2 342 SEQADV 6V0P PRO B 1 UNP Q9BQA1 EXPRESSION TAG SEQRES 1 A 637 MET ALA ALA MET ALA VAL GLY GLY ALA GLY GLY SER ARG SEQRES 2 A 637 VAL SER SER GLY ARG ASP LEU ASN CYS VAL PRO GLU ILE SEQRES 3 A 637 ALA ASP THR LEU GLY ALA VAL ALA LYS GLN GLY PHE ASP SEQRES 4 A 637 PHE LEU CYS MET PRO VAL PHE HIS PRO ARG PHE LYS ARG SEQRES 5 A 637 GLU PHE ILE GLN GLU PRO ALA LYS ASN ARG PRO GLY PRO SEQRES 6 A 637 GLN THR ARG SER ASP LEU LEU LEU SER GLY ARG ASP TRP SEQRES 7 A 637 ASN THR LEU ILE VAL GLY LYS LEU SER PRO TRP ILE ARG SEQRES 8 A 637 PRO ASP SER LYS VAL GLU LYS ILE ARG ARG ASN SER GLU SEQRES 9 A 637 ALA ALA MET LEU GLN GLU LEU ASN PHE GLY ALA TYR LEU SEQRES 10 A 637 GLY LEU PRO ALA PHE LEU LEU PRO LEU ASN GLN GLU ASP SEQRES 11 A 637 ASN THR ASN LEU ALA ARG VAL LEU THR ASN HIS ILE HIS SEQRES 12 A 637 THR GLY HIS HIS SER SER MET PHE TRP MET ARG VAL PRO SEQRES 13 A 637 LEU VAL ALA PRO GLU ASP LEU ARG ASP ASP ILE ILE GLU SEQRES 14 A 637 ASN ALA PRO THR THR HIS THR GLU GLU TYR SER GLY GLU SEQRES 15 A 637 GLU LYS THR TRP MET TRP TRP HIS ASN PHE ARG THR LEU SEQRES 16 A 637 CYS ASP TYR SER LYS ARG ILE ALA VAL ALA LEU GLU ILE SEQRES 17 A 637 GLY ALA ASP LEU PRO SER ASN HIS VAL ILE ASP ARG TRP SEQRES 18 A 637 LEU GLY GLU PRO ILE LYS ALA ALA ILE LEU PRO THR SER SEQRES 19 A 637 ILE PHE LEU THR ASN LYS LYS GLY PHE PRO VAL LEU SER SEQRES 20 A 637 LYS MET HIS GLN ARG LEU ILE PHE ARG LEU LEU LYS LEU SEQRES 21 A 637 GLU VAL GLN PHE ILE ILE THR GLY THR ASN HIS HIS SER SEQRES 22 A 637 GLU LYS GLU PHE CYS SER TYR LEU GLN TYR LEU GLU TYR SEQRES 23 A 637 LEU SER GLN ASN ARG PRO PRO PRO ASN ALA TYR GLU LEU SEQRES 24 A 637 PHE ALA LYS GLY TYR GLU ASP TYR LEU GLN SER PRO LEU SEQRES 25 A 637 GLN PRO LEU MET ASP ASN LEU GLU SER GLN THR TYR GLU SEQRES 26 A 637 VAL PHE GLU LYS ASP PRO ILE LYS TYR SER GLN TYR GLN SEQRES 27 A 637 GLN ALA ILE TYR LYS CYS LEU LEU ASP ARG VAL PRO GLU SEQRES 28 A 637 GLU GLU LYS ASP THR ASN VAL GLN VAL LEU MET VAL LEU SEQRES 29 A 637 GLY ALA GLY ARG GLY PRO LEU VAL ASN ALA SER LEU ARG SEQRES 30 A 637 ALA ALA LYS GLN ALA ASP ARG ARG ILE LYS LEU TYR ALA SEQRES 31 A 637 VAL GLU LYS ASN PRO ASN ALA VAL VAL THR LEU GLU ASN SEQRES 32 A 637 TRP GLN PHE GLU GLU TRP GLY SER GLN VAL THR VAL VAL SEQRES 33 A 637 SER SER ASP MET ARG GLU TRP VAL ALA PRO GLU LYS ALA SEQRES 34 A 637 ASP ILE ILE VAL SER GLU LEU LEU GLY SER PHE ALA ASP SEQRES 35 A 637 ASN GLU LEU SER PRO GLU CYS LEU ASP GLY ALA GLN HIS SEQRES 36 A 637 PHE LEU LYS ASP ASP GLY VAL SER ILE PRO GLY GLU TYR SEQRES 37 A 637 THR SER PHE LEU ALA PRO ILE SER SER SER LYS LEU TYR SEQRES 38 A 637 ASN GLU VAL ARG ALA CYS ARG GLU LYS ASP ARG ASP PRO SEQRES 39 A 637 GLU ALA GLN PHE GLU MET PRO TYR VAL VAL ARG LEU HIS SEQRES 40 A 637 ASN PHE HIS GLN LEU SER ALA PRO GLN PRO CYS PHE THR SEQRES 41 A 637 PHE SER HIS PRO ASN ARG ASP PRO MET ILE ASP ASN ASN SEQRES 42 A 637 ARG TYR CYS THR LEU GLU PHE PRO VAL GLU VAL ASN THR SEQRES 43 A 637 VAL LEU HIS GLY PHE ALA GLY TYR PHE GLU THR VAL LEU SEQRES 44 A 637 TYR GLN ASP ILE THR LEU SER ILE ARG PRO GLU THR HIS SEQRES 45 A 637 SER PRO GLY MET PHE SER TRP PHE PRO ILE LEU PHE PRO SEQRES 46 A 637 ILE LYS GLN PRO ILE THR VAL ARG GLU GLY GLN THR ILE SEQRES 47 A 637 CYS VAL ARG PHE TRP ARG CYS SER ASN SER LYS LYS VAL SEQRES 48 A 637 TRP TYR GLU TRP ALA VAL THR ALA PRO VAL CYS SER ALA SEQRES 49 A 637 ILE HIS ASN PRO THR GLY ARG SER TYR THR ILE GLY LEU SEQRES 1 B 342 PRO ARG LYS GLU THR PRO PRO PRO LEU VAL PRO PRO ALA SEQRES 2 B 342 ALA ARG GLU TRP ASN LEU PRO PRO ASN ALA PRO ALA CYS SEQRES 3 B 342 MET GLU ARG GLN LEU GLU ALA ALA ARG TYR ARG SER ASP SEQRES 4 B 342 GLY ALA LEU LEU LEU GLY ALA SER SER LEU SER GLY ARG SEQRES 5 B 342 CYS TRP ALA GLY SER LEU TRP LEU PHE LYS ASP PRO CYS SEQRES 6 B 342 ALA ALA PRO ASN GLU GLY PHE CYS SER ALA GLY VAL GLN SEQRES 7 B 342 THR GLU ALA GLY VAL ALA ASP LEU THR TRP VAL GLY GLU SEQRES 8 B 342 ARG GLY ILE LEU VAL ALA SER ASP SER GLY ALA VAL GLU SEQRES 9 B 342 LEU TRP GLU LEU ASP GLU ASN GLU THR LEU ILE VAL SER SEQRES 10 B 342 LYS PHE CYS LYS TYR GLU HIS ASP ASP ILE VAL SER THR SEQRES 11 B 342 VAL SER VAL LEU SER SER GLY THR GLN ALA VAL SER GLY SEQRES 12 B 342 SER LYS ASP ILE CYS ILE LYS VAL TRP ASP LEU ALA GLN SEQRES 13 B 342 GLN VAL VAL LEU SER SER TYR ARG ALA HIS ALA ALA GLN SEQRES 14 B 342 VAL THR CYS VAL ALA ALA SER PRO HIS LYS ASP SER VAL SEQRES 15 B 342 PHE LEU SER CYS SER GLU ASP ASN ARG ILE LEU LEU TRP SEQRES 16 B 342 ASP THR ARG CYS PRO LYS PRO ALA SER GLN ILE GLY CYS SEQRES 17 B 342 SER ALA PRO GLY TYR LEU PRO THR SER LEU ALA TRP HIS SEQRES 18 B 342 PRO GLN GLN SER GLU VAL PHE VAL PHE GLY ASP GLU ASN SEQRES 19 B 342 GLY THR VAL SER LEU VAL ASP THR LYS SER THR SER CYS SEQRES 20 B 342 VAL LEU SER SER ALA VAL HIS SER GLN CYS VAL THR GLY SEQRES 21 B 342 LEU VAL PHE SER PRO HIS SER VAL PRO PHE LEU ALA SER SEQRES 22 B 342 LEU SER GLU ASP CYS SER LEU ALA VAL LEU ASP SER SER SEQRES 23 B 342 LEU SER GLU LEU PHE ARG SER GLN ALA HIS ARG ASP PHE SEQRES 24 B 342 VAL ARG ASP ALA THR TRP SER PRO LEU ASN HIS SER LEU SEQRES 25 B 342 LEU THR THR VAL GLY TRP ASP HIS GLN VAL VAL HIS HIS SEQRES 26 B 342 VAL VAL PRO THR GLU PRO LEU PRO ALA PRO GLY PRO ALA SEQRES 27 B 342 SER VAL THR GLU HET QN4 A 701 35 HET CL A 702 1 HET CL A 703 1 HET SFG A 704 27 HET GOL A 705 6 HET GOL A 706 14 HETNAM QN4 2-(5-CHLORO-6-OXOPYRIDAZIN-1(6H)-YL)-N-(4-METHYL-3- HETNAM 2 QN4 SULFAMOYLPHENYL)ACETAMIDE HETNAM CL CHLORIDE ION HETNAM SFG SINEFUNGIN HETNAM GOL GLYCEROL HETSYN SFG ADENOSYL-ORNITHINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 QN4 C13 H13 CL N4 O4 S FORMUL 4 CL 2(CL 1-) FORMUL 6 SFG C15 H23 N7 O5 FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *637(H2 O) HELIX 1 AA1 GLU A 25 GLN A 36 1 12 HELIX 2 AA2 PRO A 58 ARG A 62 5 5 HELIX 3 AA3 SER A 69 LEU A 73 5 5 HELIX 4 AA4 SER A 74 LEU A 81 1 8 HELIX 5 AA5 VAL A 96 GLY A 118 1 23 HELIX 6 AA6 ASN A 131 HIS A 143 1 13 HELIX 7 AA7 ALA A 159 LEU A 163 5 5 HELIX 8 AA8 SER A 180 GLU A 182 5 3 HELIX 9 AA9 GLU A 183 CYS A 196 1 14 HELIX 10 AB1 SER A 214 TRP A 221 1 8 HELIX 11 AB2 SER A 234 PHE A 236 5 3 HELIX 12 AB3 SER A 247 LEU A 260 1 14 HELIX 13 AB4 PHE A 277 ASN A 290 1 14 HELIX 14 AB5 ASN A 295 ALA A 301 1 7 HELIX 15 AB6 GLU A 320 LYS A 329 1 10 HELIX 16 AB7 ASP A 330 VAL A 349 1 20 HELIX 17 AB8 GLY A 369 ASP A 383 1 15 HELIX 18 AB9 ASN A 394 GLU A 408 1 15 HELIX 19 AC1 TRP A 409 SER A 411 5 3 HELIX 20 AC2 LEU A 445 ALA A 453 1 9 HELIX 21 AC3 SER A 477 ALA A 486 1 10 HELIX 22 AC4 GLU A 495 GLU A 499 5 5 HELIX 23 AC5 ARG A 568 HIS A 572 5 5 HELIX 24 AC6 ASN A 627 ARG A 631 5 5 HELIX 25 AC7 ASP B 63 ALA B 67 5 5 HELIX 26 AC8 ASN B 69 CYS B 73 5 5 SHEET 1 AA1 9 SER A 16 ASP A 19 0 SHEET 2 AA1 9 PHE A 40 PRO A 44 1 O CYS A 42 N ARG A 18 SHEET 3 AA1 9 ILE A 82 LYS A 85 1 O VAL A 83 N LEU A 41 SHEET 4 AA1 9 ALA A 121 PRO A 125 1 O LEU A 123 N GLY A 84 SHEET 5 AA1 9 MET A 150 PRO A 156 1 O ARG A 154 N LEU A 124 SHEET 6 AA1 9 ILE A 202 GLU A 207 1 O ALA A 203 N MET A 153 SHEET 7 AA1 9 ILE A 226 PRO A 232 1 O ILE A 230 N LEU A 206 SHEET 8 AA1 9 GLN A 263 THR A 267 1 O ILE A 265 N LEU A 231 SHEET 9 AA1 9 SER A 16 ASP A 19 1 N GLY A 17 O PHE A 264 SHEET 1 AA2 2 LEU A 237 THR A 238 0 SHEET 2 AA2 2 PRO A 244 VAL A 245 -1 O VAL A 245 N LEU A 237 SHEET 1 AA3 5 VAL A 413 SER A 417 0 SHEET 2 AA3 5 ARG A 385 GLU A 392 1 N ALA A 390 O VAL A 416 SHEET 3 AA3 5 VAL A 358 LEU A 364 1 N LEU A 361 O LYS A 387 SHEET 4 AA3 5 ALA A 429 SER A 434 1 O VAL A 433 N LEU A 364 SHEET 5 AA3 5 LEU A 457 ILE A 464 1 O LYS A 458 N ALA A 429 SHEET 1 AA4 5 TYR A 502 VAL A 503 0 SHEET 2 AA4 5 ILE A 582 VAL A 592 -1 O LEU A 583 N TYR A 502 SHEET 3 AA4 5 THR A 546 TYR A 560 -1 N LEU A 548 O ILE A 590 SHEET 4 AA4 5 GLU A 467 SER A 476 -1 N THR A 469 O GLU A 556 SHEET 5 AA4 5 GLN A 516 SER A 522 -1 O CYS A 518 N SER A 470 SHEET 1 AA5 4 HIS A 510 GLN A 511 0 SHEET 2 AA5 4 GLU A 467 SER A 476 -1 N SER A 476 O HIS A 510 SHEET 3 AA5 4 THR A 546 TYR A 560 -1 O GLU A 556 N THR A 469 SHEET 4 AA5 4 ILE A 563 SER A 566 -1 O ILE A 563 N TYR A 560 SHEET 1 AA6 4 ARG A 534 PRO A 541 0 SHEET 2 AA6 4 THR A 597 SER A 606 -1 O ILE A 598 N PHE A 540 SHEET 3 AA6 4 LYS A 610 ALA A 619 -1 O TRP A 612 N CYS A 605 SHEET 4 AA6 4 ILE A 635 GLY A 636 -1 O ILE A 635 N VAL A 611 SHEET 1 AA7 4 GLN B 30 TYR B 36 0 SHEET 2 AA7 4 LEU B 42 SER B 47 -1 O GLY B 45 N GLU B 32 SHEET 3 AA7 4 GLY B 56 PHE B 61 -1 O PHE B 61 N LEU B 42 SHEET 4 AA7 4 ALA B 75 THR B 79 -1 O ALA B 75 N LEU B 60 SHEET 1 AA8 4 VAL B 83 VAL B 89 0 SHEET 2 AA8 4 GLY B 93 SER B 98 -1 O ALA B 97 N ASP B 85 SHEET 3 AA8 4 ALA B 102 LEU B 108 -1 O TRP B 106 N ILE B 94 SHEET 4 AA8 4 ILE B 115 TYR B 122 -1 O LYS B 118 N LEU B 105 SHEET 1 AA9 4 VAL B 128 VAL B 133 0 SHEET 2 AA9 4 GLN B 139 SER B 144 -1 O VAL B 141 N SER B 132 SHEET 3 AA9 4 ILE B 149 ASP B 153 -1 O TRP B 152 N ALA B 140 SHEET 4 AA9 4 VAL B 158 TYR B 163 -1 O TYR B 163 N ILE B 149 SHEET 1 AB1 4 VAL B 170 ALA B 175 0 SHEET 2 AB1 4 VAL B 182 SER B 187 -1 O LEU B 184 N ALA B 174 SHEET 3 AB1 4 ILE B 192 ASP B 196 -1 O TRP B 195 N PHE B 183 SHEET 4 AB1 4 ALA B 203 GLN B 205 -1 O SER B 204 N LEU B 194 SHEET 1 AB2 4 PRO B 215 TRP B 220 0 SHEET 2 AB2 4 VAL B 227 ASP B 232 -1 O VAL B 229 N ALA B 219 SHEET 3 AB2 4 THR B 236 ASP B 241 -1 O VAL B 240 N PHE B 228 SHEET 4 AB2 4 LEU B 249 ALA B 252 -1 O SER B 251 N VAL B 237 SHEET 1 AB3 4 VAL B 258 PHE B 263 0 SHEET 2 AB3 4 LEU B 271 SER B 275 -1 O ALA B 272 N VAL B 262 SHEET 3 AB3 4 LEU B 280 LEU B 283 -1 O ALA B 281 N SER B 273 SHEET 4 AB3 4 GLU B 289 SER B 293 -1 O LEU B 290 N VAL B 282 SHEET 1 AB4 3 VAL B 300 TRP B 305 0 SHEET 2 AB4 3 LEU B 312 GLY B 317 -1 O THR B 314 N THR B 304 SHEET 3 AB4 3 VAL B 322 VAL B 326 -1 O HIS B 325 N LEU B 313 LINK SG CYS A 278 C8 QN4 A 701 1555 1555 1.83 CISPEP 1 GLU A 57 PRO A 58 0 1.81 CISPEP 2 GLY A 64 PRO A 65 0 -0.68 CISPEP 3 ILE A 464 PRO A 465 0 7.70 CISPEP 4 HIS A 523 PRO A 524 0 -3.05 CISPEP 5 ALA A 619 PRO A 620 0 1.95 CISPEP 6 ALA B 67 PRO B 68 0 5.11 SITE 1 AC1 9 ASN A 239 PHE A 243 VAL A 245 GLU A 276 SITE 2 AC1 9 CYS A 278 SER A 279 GLN A 282 TYR A 286 SITE 3 AC1 9 ASN A 290 SITE 1 AC2 3 ARG A 368 GLY A 369 PRO A 370 SITE 1 AC3 2 LYS A 200 ARG A 485 SITE 1 AC4 19 PRO A 314 LEU A 315 TYR A 324 PHE A 327 SITE 2 AC4 19 TYR A 334 GLY A 365 GLY A 367 PRO A 370 SITE 3 AC4 19 GLU A 392 LYS A 393 SER A 418 ASP A 419 SITE 4 AC4 19 MET A 420 GLU A 435 LEU A 436 CYS A 449 SITE 5 AC4 19 HOH A 826 HOH A 859 HOH A 907 SITE 1 AC5 5 THR A 80 VAL A 83 PRO A 120 TRP A 152 SITE 2 AC5 5 GLN A 263 SITE 1 AC6 6 GLN A 454 LEU A 457 LYS A 458 ASP A 459 SITE 2 AC6 6 PRO A 524 ARG A 526 CRYST1 99.110 138.570 178.430 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005604 0.00000