HEADER HYDROLASE/HYDROLASE INHIBITOR 20-NOV-19 6V1P TITLE STRUCTURE OF VIM-2 BOUND TO QPX7728 AT 1.20 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLAVIM-2,METALLO BETA-LACTAMASE,METALLO-BETA LACTAMASE COMPND 5 PROTEIN,METALLO-BETA-LACTAMASE VIM-2,VIM-2,VIM-2 BETA-LACTAMASE,VIM-2 COMPND 6 CLASS B METALLO B-LACTAMASE,VIM-2 METALLO BETA-LACTAMASE,VIM-2 TYPE COMPND 7 METALLO-BETA-LACTAMASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-2, BLA VIM-2, BLA-VIM-2, BLASVIM-2, BLAVIM2, VIM-2, SOURCE 5 VIM-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBAPENEMASE, BORONATE, INHIBITOR, BETA-LACTAMASE, HYDROLASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.A.PEMBERTON,Y.CHEN REVDAT 3 11-OCT-23 6V1P 1 REMARK REVDAT 2 05-AUG-20 6V1P 1 JRNL LINK REVDAT 1 25-MAR-20 6V1P 0 JRNL AUTH S.J.HECKER,K.R.REDDY,O.LOMOVSKAYA,D.C.GRIFFITH, JRNL AUTH 2 D.RUBIO-APARICIO,K.NELSON,R.TSIVKOVSKI,D.SUN,M.SABET, JRNL AUTH 3 Z.TARAZI,J.PARKINSON,M.TOTROV,S.H.BOYER,T.W.GLINKA, JRNL AUTH 4 O.A.PEMBERTON,Y.CHEN,M.N.DUDLEY JRNL TITL DISCOVERY OF CYCLIC BORONIC ACID QPX7728, AN JRNL TITL 2 ULTRABROAD-SPECTRUM INHIBITOR OF SERINE AND JRNL TITL 3 METALLO-BETA-LACTAMASES. JRNL REF J.MED.CHEM. V. 63 7491 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32150407 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01976 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 122692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 11621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2000 - 3.7300 0.99 7705 453 0.1471 0.1675 REMARK 3 2 3.7300 - 2.9600 1.00 7856 356 0.1309 0.1405 REMARK 3 3 2.9600 - 2.5900 1.00 7780 404 0.1390 0.1581 REMARK 3 4 2.5900 - 2.3500 1.00 7775 414 0.1322 0.1539 REMARK 3 5 2.3500 - 2.1800 0.99 7727 461 0.1245 0.1611 REMARK 3 6 2.1800 - 2.0500 0.99 7730 426 0.1174 0.1441 REMARK 3 7 2.0500 - 1.9500 0.99 7650 445 0.1211 0.1735 REMARK 3 8 1.9500 - 1.8600 0.99 7703 418 0.1200 0.1603 REMARK 3 9 1.8600 - 1.7900 0.99 7675 410 0.1174 0.1385 REMARK 3 10 1.7900 - 1.7300 0.98 7687 394 0.1134 0.1482 REMARK 3 11 1.7300 - 1.6800 0.98 7620 428 0.1143 0.1500 REMARK 3 12 1.6800 - 1.6300 0.98 7694 390 0.1202 0.1621 REMARK 3 13 1.6300 - 1.5900 0.98 7580 422 0.1224 0.1410 REMARK 3 14 1.5900 - 1.5500 0.98 7600 420 0.1253 0.1631 REMARK 3 15 1.5500 - 1.5100 0.97 7620 416 0.1275 0.1438 REMARK 3 16 1.5100 - 1.4800 0.97 7519 419 0.1401 0.1639 REMARK 3 17 1.4800 - 1.4500 0.97 7587 387 0.1514 0.1872 REMARK 3 18 1.4500 - 1.4200 0.97 7591 429 0.1624 0.1941 REMARK 3 19 1.4200 - 1.4000 0.97 7477 365 0.1688 0.1930 REMARK 3 20 1.4000 - 1.3700 0.97 7599 382 0.1628 0.2047 REMARK 3 21 1.3700 - 1.3500 0.96 7550 386 0.1714 0.2150 REMARK 3 22 1.3500 - 1.3300 0.96 7561 331 0.1780 0.2057 REMARK 3 23 1.3300 - 1.3100 0.96 7586 316 0.1920 0.2299 REMARK 3 24 1.3100 - 1.2900 0.96 7443 378 0.2026 0.2214 REMARK 3 25 1.2900 - 1.2800 0.96 7546 327 0.2059 0.2480 REMARK 3 26 1.2800 - 1.2600 0.96 7495 393 0.2215 0.2365 REMARK 3 27 1.2600 - 1.2400 0.92 7167 392 0.2488 0.2654 REMARK 3 28 1.2400 - 1.2300 0.84 6569 321 0.2648 0.2905 REMARK 3 29 1.2300 - 1.2100 0.77 5991 296 0.2693 0.2804 REMARK 3 30 1.2100 - 1.2000 0.69 5415 242 0.2927 0.3099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 2.01900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE, 0.085 M REMARK 280 SODIUM ACETATE PH 4.6, 25.5% (W/V) PEG4000, 15% (V/V) GLYCEROL, REMARK 280 1 MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.33500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.55500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.55500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 657 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 PRO A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 GLY B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 617 O HOH A 723 2.14 REMARK 500 OE2 GLU A 98 NE2 GLN A 103 2.15 REMARK 500 O HOH A 771 O HOH A 781 2.17 REMARK 500 O HOH A 515 O HOH A 693 2.18 REMARK 500 O HOH B 690 O HOH B 745 2.18 REMARK 500 NE2 GLN A 103 O HOH A 501 2.19 REMARK 500 O HOH A 505 O HOH A 680 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 145.65 75.25 REMARK 500 TRP A 87 66.15 72.16 REMARK 500 ALA A 195 -107.05 -152.93 REMARK 500 ASP B 84 146.44 73.80 REMARK 500 TRP B 87 66.31 71.69 REMARK 500 ALA B 195 -106.73 -153.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 788 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 789 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 790 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 791 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 792 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 793 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH B 795 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 796 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 797 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 99.9 REMARK 620 3 HIS A 196 NE2 99.5 117.8 REMARK 620 4 QNA A 401 O14 165.6 86.6 88.7 REMARK 620 5 QNA A 401 O13 102.2 112.3 120.2 63.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 91.6 REMARK 620 3 HIS A 263 NE2 86.6 111.0 REMARK 620 4 QNA A 401 O03 169.2 99.1 88.9 REMARK 620 5 QNA A 401 O11 93.8 136.5 112.4 79.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS B 285 ND1 69.3 REMARK 620 3 ACT B 405 OXT 71.1 4.0 REMARK 620 4 ACT B 406 O 68.0 3.1 3.2 REMARK 620 5 ACT B 406 OXT 68.0 4.5 3.2 1.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 285 ND1 REMARK 620 2 ACT A 405 OXT 105.2 REMARK 620 3 ACT A 406 O 90.0 151.7 REMARK 620 4 ACT A 406 OXT 108.5 96.9 55.2 REMARK 620 5 HIS B 170 NE2 97.6 155.3 34.3 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 99.8 REMARK 620 3 HIS B 196 NE2 99.4 119.3 REMARK 620 4 QNA B 401 O14 165.4 86.7 88.5 REMARK 620 5 QNA B 401 O13 101.6 112.9 118.5 63.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 91.9 REMARK 620 3 HIS B 263 NE2 86.6 110.7 REMARK 620 4 QNA B 401 O03 168.7 99.2 87.7 REMARK 620 5 QNA B 401 O11 94.0 136.8 112.3 79.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QNA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QNA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 407 DBREF 6V1P A 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 6V1P B 25 300 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 6V1P GLY A 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 6V1P PRO A 24 UNP Q9K2N0 EXPRESSION TAG SEQADV 6V1P GLY B 23 UNP Q9K2N0 EXPRESSION TAG SEQADV 6V1P PRO B 24 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET QNA A 401 17 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ACT A 405 4 HET ACT A 406 4 HET GOL A 407 6 HET QNA B 401 17 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HET ACT B 405 4 HET ACT B 406 4 HET GOL B 407 6 HETNAM QNA (1~{A}~{R},7~{B}~{S})-5-FLUORANYL-2,2-BIS(OXIDANYL)- HETNAM 2 QNA 1~{A},7~{B}-DIHYDRO-1~{H}-CYCLOPROPA[C][1, HETNAM 3 QNA 2]BENZOXABORININE-4-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 QNA 2(C10 H9 B F O5 1-) FORMUL 4 ZN 6(ZN 2+) FORMUL 7 ACT 4(C2 H3 O2 1-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 17 HOH *590(H2 O) HELIX 1 AA1 THR A 33 ILE A 37 5 5 HELIX 2 AA2 GLY A 88 ILE A 104 1 16 HELIX 3 AA3 HIS A 118 GLY A 123 1 6 HELIX 4 AA4 GLY A 124 ALA A 131 1 8 HELIX 5 AA5 SER A 139 GLY A 150 1 12 HELIX 6 AA6 CYS A 221 ILE A 223 5 3 HELIX 7 AA7 GLU A 241 TYR A 253 1 13 HELIX 8 AA8 LEU A 280 ARG A 296 1 17 HELIX 9 AA9 THR B 33 ILE B 37 5 5 HELIX 10 AB1 GLY B 88 ILE B 104 1 16 HELIX 11 AB2 HIS B 118 GLY B 123 1 6 HELIX 12 AB3 GLY B 124 ALA B 131 1 8 HELIX 13 AB4 SER B 139 GLY B 150 1 12 HELIX 14 AB5 CYS B 221 ILE B 223 5 3 HELIX 15 AB6 GLU B 241 TYR B 253 1 13 HELIX 16 AB7 LEU B 280 SER B 297 1 18 SHEET 1 AA1 7 ARG A 43 ALA A 49 0 SHEET 2 AA1 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 AA1 7 ALA A 64 ASP A 76 -1 O ILE A 73 N TRP A 53 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA1 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 AA1 7 ALA A 135 ALA A 138 1 O TYR A 137 N ALA A 112 SHEET 7 AA1 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 AA2 5 ASP A 180 PHE A 184 0 SHEET 2 AA2 5 VAL A 187 TYR A 191 -1 O LEU A 189 N VAL A 182 SHEET 3 AA2 5 VAL A 202 TYR A 204 -1 O TYR A 204 N GLU A 188 SHEET 4 AA2 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 AA2 5 PHE A 258 PRO A 261 1 O ILE A 260 N GLY A 219 SHEET 1 AA3 7 ARG B 43 ALA B 49 0 SHEET 2 AA3 7 VAL B 52 PHE B 61 -1 O ILE B 56 N ARG B 43 SHEET 3 AA3 7 ALA B 64 ASP B 76 -1 O TYR B 67 N GLN B 59 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 AA3 7 VAL B 109 VAL B 113 1 O ARG B 111 N LEU B 82 SHEET 6 AA3 7 ALA B 135 ALA B 138 1 O ALA B 135 N THR B 110 SHEET 7 AA3 7 HIS B 170 SER B 171 1 O HIS B 170 N THR B 136 SHEET 1 AA4 5 ASP B 180 PHE B 184 0 SHEET 2 AA4 5 VAL B 187 TYR B 191 -1 O LEU B 189 N VAL B 182 SHEET 3 AA4 5 VAL B 202 VAL B 205 -1 O TYR B 204 N GLU B 188 SHEET 4 AA4 5 VAL B 216 GLY B 220 -1 O TYR B 218 N VAL B 203 SHEET 5 AA4 5 PHE B 258 PRO B 261 1 O ILE B 260 N GLY B 219 LINK NE2 HIS A 116 ZN ZN A 402 1555 1555 2.09 LINK ND1 HIS A 118 ZN ZN A 402 1555 1555 1.99 LINK OD2 ASP A 120 ZN ZN A 403 1555 1555 2.16 LINK NE2 HIS A 170 ZN ZN B 404 1555 3555 2.03 LINK NE2 HIS A 196 ZN ZN A 402 1555 1555 2.00 LINK SG CYS A 221 ZN ZN A 403 1555 1555 2.29 LINK NE2 HIS A 263 ZN ZN A 403 1555 1555 2.08 LINK ND1 HIS A 285 ZN ZN A 404 1555 1555 2.05 LINK O14 QNA A 401 ZN ZN A 402 1555 1555 2.54 LINK O13 QNA A 401 ZN ZN A 402 1555 1555 1.93 LINK O03 QNA A 401 ZN ZN A 403 1555 1555 2.16 LINK O11 QNA A 401 ZN ZN A 403 1555 1555 2.08 LINK ZN ZN A 404 OXT ACT A 405 1555 1555 2.05 LINK ZN ZN A 404 O ACT A 406 1555 1555 2.59 LINK ZN ZN A 404 OXT ACT A 406 1555 1555 1.93 LINK ZN ZN A 404 NE2 HIS B 170 3465 1555 2.03 LINK NE2 HIS B 116 ZN ZN B 402 1555 1555 2.09 LINK ND1 HIS B 118 ZN ZN B 402 1555 1555 1.98 LINK OD2 ASP B 120 ZN ZN B 403 1555 1555 2.17 LINK NE2 HIS B 196 ZN ZN B 402 1555 1555 2.01 LINK SG CYS B 221 ZN ZN B 403 1555 1555 2.29 LINK NE2 HIS B 263 ZN ZN B 403 1555 1555 2.06 LINK ND1 HIS B 285 ZN ZN B 404 1555 1555 2.08 LINK O14 QNA B 401 ZN ZN B 402 1555 1555 2.54 LINK O13 QNA B 401 ZN ZN B 402 1555 1555 1.95 LINK O03 QNA B 401 ZN ZN B 403 1555 1555 2.17 LINK O11 QNA B 401 ZN ZN B 403 1555 1555 2.08 LINK ZN ZN B 404 OXT ACT B 405 1555 1555 1.98 LINK ZN ZN B 404 O ACT B 406 1555 1555 2.64 LINK ZN ZN B 404 OXT ACT B 406 1555 1555 2.00 SITE 1 AC1 16 PHE A 61 TYR A 67 TRP A 87 HIS A 116 SITE 2 AC1 16 HIS A 118 ASP A 120 HIS A 196 CYS A 221 SITE 3 AC1 16 ARG A 228 GLY A 232 ASN A 233 HIS A 263 SITE 4 AC1 16 ZN A 402 ZN A 403 HOH A 548 HOH A 556 SITE 1 AC2 4 HIS A 116 HIS A 118 HIS A 196 QNA A 401 SITE 1 AC3 4 ASP A 120 CYS A 221 HIS A 263 QNA A 401 SITE 1 AC4 4 HIS A 285 ACT A 405 ACT A 406 HIS B 170 SITE 1 AC5 8 HIS A 285 ZN A 404 ACT A 406 ALA B 135 SITE 2 AC5 8 THR B 136 THR B 169 HIS B 170 HOH B 599 SITE 1 AC6 7 HIS A 285 ASN A 288 ZN A 404 ACT A 405 SITE 2 AC6 7 ALA B 135 HIS B 170 HOH B 501 SITE 1 AC7 11 PHE A 61 TYR A 67 ARG A 228 GLY A 232 SITE 2 AC7 11 ASN A 233 HOH A 529 HOH A 539 HOH A 621 SITE 3 AC7 11 SER B 230 GOL B 407 HOH B 510 SITE 1 AC8 16 PHE B 61 TYR B 67 TRP B 87 HIS B 116 SITE 2 AC8 16 HIS B 118 ASP B 120 HIS B 196 CYS B 221 SITE 3 AC8 16 ARG B 228 GLY B 232 ASN B 233 HIS B 263 SITE 4 AC8 16 ZN B 402 ZN B 403 HOH B 553 HOH B 557 SITE 1 AC9 4 HIS B 116 HIS B 118 HIS B 196 QNA B 401 SITE 1 AD1 4 ASP B 120 CYS B 221 HIS B 263 QNA B 401 SITE 1 AD2 4 HIS A 170 HIS B 285 ACT B 405 ACT B 406 SITE 1 AD3 8 ALA A 135 THR A 136 THR A 169 HIS A 170 SITE 2 AD3 8 HOH A 586 HIS B 285 ZN B 404 ACT B 406 SITE 1 AD4 7 ALA A 135 HIS A 170 HOH A 509 HIS B 285 SITE 2 AD4 7 ASN B 288 ZN B 404 ACT B 405 SITE 1 AD5 9 GOL A 407 HOH A 533 HOH A 621 PHE B 61 SITE 2 AD5 9 TYR B 67 ARG B 228 GLY B 232 ASN B 233 SITE 3 AD5 9 HOH B 539 CRYST1 66.670 79.120 77.110 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012968 0.00000