HEADER TRANSFERASE 25-NOV-19 6V2T TITLE X-RAY STRUCTURE OF A SUGAR N-FORMYLTRANSFERASE FROM SHEWANELLA SP TITLE 2 FDAARGOS_354 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE FORMYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA SP. FDAARGOS_354; SOURCE 3 ORGANISM_TAXID: 1930557; SOURCE 4 GENE: CEQ32_00475; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 KEYWDS N-FORMYLTRANSFERASE, LIPOPOLYSACCHARIDE, O-ANTIGEN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.M.GIRARDI,J.B.THODEN,H.M.HOLDEN REVDAT 3 11-OCT-23 6V2T 1 REMARK REVDAT 2 08-APR-20 6V2T 1 JRNL REVDAT 1 08-JAN-20 6V2T 0 JRNL AUTH N.M.GIRARDI,J.B.THODEN,H.M.HOLDEN JRNL TITL MISANNOTATIONS OF THE GENES ENCODING SUGAR JRNL TITL 2 N-FORMYLTRANSFERASES. JRNL REF PROTEIN SCI. V. 29 930 2020 JRNL REFN ESSN 1469-896X JRNL PMID 31867814 JRNL DOI 10.1002/PRO.3807 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 42853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : -2.40000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.862 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4249 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3866 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5782 ; 1.633 ; 1.671 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8989 ; 1.313 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 7.068 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;35.203 ;23.604 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 716 ;15.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.350 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4664 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 854 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6V2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9876 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45110 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03100 REMARK 200 FOR THE DATA SET : 56.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15500 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YFY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9-14% PEG-5000, 200 MM N(C2H5)4CL, 5 REMARK 280 MM TDP-QUI4N, 5 MM FOLINIC ACID, PH 7, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.21950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.21950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.48300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 101.23600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.48300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 101.23600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.21950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.48300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 101.23600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.21950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.48300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 101.23600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLU A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLU B -9 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 ASN B -8 CG OD1 ND2 REMARK 470 HIS B 0 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 406 O HOH A 502 1.98 REMARK 500 O HOH A 541 O HOH A 548 2.01 REMARK 500 O HOH A 513 O HOH A 542 2.09 REMARK 500 O HOH A 488 O HOH A 540 2.12 REMARK 500 O HOH A 526 O HOH A 559 2.12 REMARK 500 OXT LYS B 245 O HOH B 401 2.14 REMARK 500 O HOH B 456 O HOH B 503 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 97 48.26 -85.37 REMARK 500 ASN A 127 -168.34 -110.12 REMARK 500 HIS A 219 88.45 -150.83 REMARK 500 ASN A 224 -77.88 -107.15 REMARK 500 PRO B 97 41.35 -84.33 REMARK 500 ASN B 127 -166.09 -101.00 REMARK 500 GLN B 178 40.65 -141.08 REMARK 500 ASN B 224 -90.06 -107.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FOL A 302 REMARK 610 FOL B 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP B 146 O REMARK 620 2 ASN B 151 OD1 100.0 REMARK 620 3 ALA B 241 O 93.0 165.3 REMARK 620 4 HOH B 489 O 134.4 91.0 74.8 REMARK 620 5 HOH B 515 O 109.6 84.6 97.7 115.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0FX A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0FX B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 304 DBREF1 6V2T A 1 245 UNP A0A1Z4A6S6_9GAMM DBREF2 6V2T A A0A1Z4A6S6 1 245 DBREF1 6V2T B 1 245 UNP A0A1Z4A6S6_9GAMM DBREF2 6V2T B A0A1Z4A6S6 1 245 SEQADV 6V2T MET A -21 UNP A0A1Z4A6S INITIATING METHIONINE SEQADV 6V2T GLY A -20 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER A -19 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER A -18 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS A -17 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS A -16 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS A -15 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS A -14 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS A -13 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS A -12 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER A -11 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER A -10 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLU A -9 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T ASN A -8 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T LEU A -7 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T TYR A -6 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T PHE A -5 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLN A -4 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLY A -3 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLY A -2 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLY A -1 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS A 0 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T MET B -21 UNP A0A1Z4A6S INITIATING METHIONINE SEQADV 6V2T GLY B -20 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER B -19 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER B -18 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS B -17 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS B -16 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS B -15 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS B -14 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS B -13 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS B -12 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER B -11 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T SER B -10 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLU B -9 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T ASN B -8 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T LEU B -7 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T TYR B -6 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T PHE B -5 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLN B -4 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLY B -3 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLY B -2 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T GLY B -1 UNP A0A1Z4A6S EXPRESSION TAG SEQADV 6V2T HIS B 0 UNP A0A1Z4A6S EXPRESSION TAG SEQRES 1 A 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 267 ASN LEU TYR PHE GLN GLY GLY GLY HIS MET MET HIS VAL SEQRES 3 A 267 LEU ILE VAL SER ASP ASN LYS PRO LEU VAL SER PHE ILE SEQRES 4 A 267 GLN ASN LEU VAL ALA VAL ASN ALA ASP LYS PHE GLN SER SEQRES 5 A 267 VAL THR PHE ASP TYR ARG TYR SER ALA ILE ASN LYS ASN SEQRES 6 A 267 PRO ALA SER LEU ILE SER LEU GLY LEU THR SER ILE ASN SEQRES 7 A 267 VAL LYS SER GLU LYS ASP VAL ALA HIS ILE VAL GLU HIS SEQRES 8 A 267 TYR GLU LEU VAL VAL SER ALA HIS CYS LYS GLN ILE PHE SEQRES 9 A 267 PRO SER GLU LEU VAL ASN ASN VAL ARG CYS ILE ASN ILE SEQRES 10 A 267 HIS PRO GLY LEU ASN PRO HIS ASN ARG GLY TRP PHE PRO SEQRES 11 A 267 GLN VAL PHE SER ILE ILE ASN LYS LYS PRO VAL GLY CYS SEQRES 12 A 267 THR ILE HIS LEU MET ASN GLU GLU ILE ASP ASP GLY ALA SEQRES 13 A 267 ILE LEU PHE GLN LYS GLU VAL PRO ILE PHE GLU TRP ASP SEQRES 14 A 267 THR SER LEU ASN VAL TYR GLU ARG VAL GLN GLN THR GLU SEQRES 15 A 267 MET ASP LEU LEU LYS ASP HIS LEU ALA ASP LEU VAL PHE SEQRES 16 A 267 ALA ASN TYR GLN GLN LYS LEU SER TYR GLU LYS GLY ASN SEQRES 17 A 267 TYR ASN GLY ILE SER ASP PHE LYS ALA LEU CYS LYS LEU SEQRES 18 A 267 ASN LEU ASP HIS ILE GLY THR LEU ARG ASP HIS ILE ASP SEQRES 19 A 267 LEU LEU ARG ALA LEU SER HIS GLY ASP PHE ASN ASN ALA SEQRES 20 A 267 TYR TYR LEU ARG PRO ASP GLY SER LYS VAL TYR ILE ARG SEQRES 21 A 267 LEU SER ALA GLU LEU VAL LYS SEQRES 1 B 267 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 B 267 ASN LEU TYR PHE GLN GLY GLY GLY HIS MET MET HIS VAL SEQRES 3 B 267 LEU ILE VAL SER ASP ASN LYS PRO LEU VAL SER PHE ILE SEQRES 4 B 267 GLN ASN LEU VAL ALA VAL ASN ALA ASP LYS PHE GLN SER SEQRES 5 B 267 VAL THR PHE ASP TYR ARG TYR SER ALA ILE ASN LYS ASN SEQRES 6 B 267 PRO ALA SER LEU ILE SER LEU GLY LEU THR SER ILE ASN SEQRES 7 B 267 VAL LYS SER GLU LYS ASP VAL ALA HIS ILE VAL GLU HIS SEQRES 8 B 267 TYR GLU LEU VAL VAL SER ALA HIS CYS LYS GLN ILE PHE SEQRES 9 B 267 PRO SER GLU LEU VAL ASN ASN VAL ARG CYS ILE ASN ILE SEQRES 10 B 267 HIS PRO GLY LEU ASN PRO HIS ASN ARG GLY TRP PHE PRO SEQRES 11 B 267 GLN VAL PHE SER ILE ILE ASN LYS LYS PRO VAL GLY CYS SEQRES 12 B 267 THR ILE HIS LEU MET ASN GLU GLU ILE ASP ASP GLY ALA SEQRES 13 B 267 ILE LEU PHE GLN LYS GLU VAL PRO ILE PHE GLU TRP ASP SEQRES 14 B 267 THR SER LEU ASN VAL TYR GLU ARG VAL GLN GLN THR GLU SEQRES 15 B 267 MET ASP LEU LEU LYS ASP HIS LEU ALA ASP LEU VAL PHE SEQRES 16 B 267 ALA ASN TYR GLN GLN LYS LEU SER TYR GLU LYS GLY ASN SEQRES 17 B 267 TYR ASN GLY ILE SER ASP PHE LYS ALA LEU CYS LYS LEU SEQRES 18 B 267 ASN LEU ASP HIS ILE GLY THR LEU ARG ASP HIS ILE ASP SEQRES 19 B 267 LEU LEU ARG ALA LEU SER HIS GLY ASP PHE ASN ASN ALA SEQRES 20 B 267 TYR TYR LEU ARG PRO ASP GLY SER LYS VAL TYR ILE ARG SEQRES 21 B 267 LEU SER ALA GLU LEU VAL LYS HET 0FX A 301 35 HET FOL A 302 23 HET EDO A 303 4 HET PO4 A 304 5 HET 0FX B 301 35 HET FOL B 302 23 HET EDO B 303 4 HET NA B 304 1 HETNAM 0FX DTDP-4-AMINO-4,6-DIDEOXYGLUCOSE HETNAM FOL FOLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 0FX 2(C16 H27 N3 O14 P2) FORMUL 4 FOL 2(C19 H19 N7 O6) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 PO4 O4 P 3- FORMUL 10 NA NA 1+ FORMUL 11 HOH *291(H2 O) HELIX 1 AA1 ASN A 10 ASN A 24 1 15 HELIX 2 AA2 PRO A 44 SER A 49 1 6 HELIX 3 AA3 SER A 59 TYR A 70 1 12 HELIX 4 AA4 PRO A 83 ASN A 88 1 6 HELIX 5 AA5 PHE A 107 LYS A 116 1 10 HELIX 6 AA6 THR A 148 PHE A 173 1 26 HELIX 7 AA7 GLY A 189 LYS A 198 1 10 HELIX 8 AA8 LEU A 207 LEU A 217 1 11 HELIX 9 AA9 ASN B 10 ASN B 24 1 15 HELIX 10 AB1 PRO B 44 SER B 49 1 6 HELIX 11 AB2 SER B 59 TYR B 70 1 12 HELIX 12 AB3 PRO B 83 ASN B 88 1 6 HELIX 13 AB4 PHE B 107 LYS B 116 1 10 HELIX 14 AB5 THR B 148 PHE B 173 1 26 HELIX 15 AB6 GLY B 189 LYS B 198 1 10 HELIX 16 AB7 LEU B 207 LEU B 217 1 11 SHEET 1 AA1 7 THR A 53 ILE A 55 0 SHEET 2 AA1 7 VAL A 31 SER A 38 1 N TYR A 37 O ILE A 55 SHEET 3 AA1 7 MET A 2 SER A 8 1 N ILE A 6 O ASP A 34 SHEET 4 AA1 7 LEU A 72 ALA A 76 1 O VAL A 74 N VAL A 7 SHEET 5 AA1 7 ARG A 91 HIS A 96 1 O ILE A 93 N SER A 75 SHEET 6 AA1 7 VAL A 119 LEU A 125 -1 O THR A 122 N HIS A 96 SHEET 7 AA1 7 ILE A 135 VAL A 141 -1 O PHE A 137 N ILE A 123 SHEET 1 AA2 2 ARG A 104 GLY A 105 0 SHEET 2 AA2 2 TYR A 187 ASN A 188 1 O ASN A 188 N ARG A 104 SHEET 1 AA3 2 ILE A 204 THR A 206 0 SHEET 2 AA3 2 ILE B 204 THR B 206 -1 O GLY B 205 N GLY A 205 SHEET 1 AA4 4 ALA A 225 LEU A 228 0 SHEET 2 AA4 4 LYS A 234 VAL A 244 -1 O VAL A 235 N TYR A 227 SHEET 3 AA4 4 LYS B 234 VAL B 244 -1 O VAL B 244 N LYS A 234 SHEET 4 AA4 4 TYR B 226 LEU B 228 -1 N TYR B 227 O VAL B 235 SHEET 1 AA5 7 THR B 53 ILE B 55 0 SHEET 2 AA5 7 VAL B 31 SER B 38 1 N TYR B 37 O THR B 53 SHEET 3 AA5 7 MET B 2 SER B 8 1 N ILE B 6 O ASP B 34 SHEET 4 AA5 7 LEU B 72 ALA B 76 1 O ALA B 76 N VAL B 7 SHEET 5 AA5 7 ARG B 91 HIS B 96 1 O ILE B 93 N SER B 75 SHEET 6 AA5 7 VAL B 119 LEU B 125 -1 O THR B 122 N HIS B 96 SHEET 7 AA5 7 ILE B 135 VAL B 141 -1 O PHE B 137 N ILE B 123 SHEET 1 AA6 2 ARG B 104 GLY B 105 0 SHEET 2 AA6 2 TYR B 187 ASN B 188 1 O ASN B 188 N ARG B 104 LINK O TRP B 146 NA NA B 304 1555 1555 2.22 LINK OD1 ASN B 151 NA NA B 304 1555 1555 2.44 LINK O ALA B 241 NA NA B 304 1555 1555 2.28 LINK NA NA B 304 O HOH B 489 1555 1555 2.44 LINK NA NA B 304 O HOH B 515 1555 1555 2.25 CISPEP 1 ASN A 100 PRO A 101 0 7.26 CISPEP 2 ASN B 100 PRO B 101 0 2.83 SITE 1 AC1 17 HIS A 77 CYS A 78 LYS A 79 HIS A 96 SITE 2 AC1 17 GLY A 105 PHE A 107 GLN A 109 TYR A 153 SITE 3 AC1 17 HIS A 219 PHE A 222 ASN A 224 FOL A 302 SITE 4 AC1 17 HOH A 415 HOH A 427 HOH A 448 HOH A 475 SITE 5 AC1 17 HOH A 487 SITE 1 AC2 15 SER A 75 CYS A 78 LYS A 79 GLN A 80 SITE 2 AC2 15 ILE A 81 PHE A 82 ASN A 94 TRP A 106 SITE 3 AC2 15 HIS A 124 MET A 126 ASN A 127 GLU A 129 SITE 4 AC2 15 ASP A 131 0FX A 301 HOH A 459 SITE 1 AC3 5 LYS A 116 ILE A 143 ARG A 215 HOH A 467 SITE 2 AC3 5 HOH A 520 SITE 1 AC4 6 ARG A 238 LEU A 239 SER A 240 ARG B 238 SITE 2 AC4 6 LEU B 239 SER B 240 SITE 1 AC5 15 ASN B 10 HIS B 77 LYS B 79 TRP B 106 SITE 2 AC5 15 PHE B 107 GLN B 109 TYR B 153 HIS B 219 SITE 3 AC5 15 PHE B 222 ASN B 224 HOH B 407 HOH B 433 SITE 4 AC5 15 HOH B 457 HOH B 501 HOH B 502 SITE 1 AC6 16 SER B 75 CYS B 78 LYS B 79 GLN B 80 SITE 2 AC6 16 PHE B 82 ASN B 94 TRP B 106 HIS B 124 SITE 3 AC6 16 MET B 126 ASN B 127 GLU B 129 ILE B 130 SITE 4 AC6 16 ASP B 131 TYR B 187 HOH B 426 HOH B 479 SITE 1 AC7 6 LYS B 116 ILE B 143 PHE B 144 GLU B 145 SITE 2 AC7 6 ARG B 215 HOH B 485 SITE 1 AC8 5 TRP B 146 ASN B 151 ALA B 241 HOH B 489 SITE 2 AC8 5 HOH B 515 CRYST1 78.966 202.472 74.439 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013434 0.00000