HEADER GENE REGULATION 26-NOV-19 6V3N TITLE CRYSTAL STRUCTURE OF CDYL2 IN COMPLEX WITH H3K27ME3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN Y-LIKE PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CHROMODOMAIN; COMPND 5 SYNONYM: CDY-LIKE 2, CDYL2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACE-GLN-LEU-ALA-THR-LYS-ALA-ALA-ARG-M3L-SER-ALA-PRO-ALA- COMPND 9 THR-TYR-NH2; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDYL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS CHROMODOMAIN, EPIGENETICS, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, PROTEIN BINDING, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR S.QIN,W.TEMPEL,C.H.ARROWSMITH,C.BOUNTRA,A.M.EDWARDS,J.MIN,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 11-OCT-23 6V3N 1 REMARK REVDAT 3 29-JUL-20 6V3N 1 JRNL REVDAT 2 17-JUN-20 6V3N 1 JRNL REVDAT 1 01-APR-20 6V3N 0 JRNL AUTH C.DONG,Y.LIU,T.J.LYU,S.BELDAR,K.N.LAMB,W.TEMPEL,Y.LI,Z.LI, JRNL AUTH 2 L.I.JAMES,S.QIN,Y.WANG,J.MIN JRNL TITL STRUCTURAL BASIS FOR THE BINDING SELECTIVITY OF HUMAN CDY JRNL TITL 2 CHROMODOMAINS. JRNL REF CELL CHEM BIOL V. 27 827 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32470319 JRNL DOI 10.1016/J.CHEMBIOL.2020.05.007 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.02 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2582 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 0 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.23650 REMARK 3 B22 (A**2) : -8.23650 REMARK 3 B33 (A**2) : 16.47290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.326 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.244 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.318 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.244 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|2 - 48} REMARK 3 ORIGIN FOR THE GROUP (A): -4.6526 -0.7595 -11.974 REMARK 3 T TENSOR REMARK 3 T11: 0.403 T22: -0.2351 REMARK 3 T33: -0.2265 T12: 0.0271 REMARK 3 T13: -0.069 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 1.9463 L22: 2.7181 REMARK 3 L33: 8.4185 L12: 1.4378 REMARK 3 L13: 2.1187 L23: 0.1918 REMARK 3 S TENSOR REMARK 3 S11: 0.1431 S12: 1.194 S13: 0.8338 REMARK 3 S21: 1.194 S22: 0.1508 S23: -0.354 REMARK 3 S31: 0.8338 S32: -0.354 S33: -0.2939 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|49 - 61} REMARK 3 ORIGIN FOR THE GROUP (A): 11.0217 19.206 5.4126 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: -0.4993 REMARK 3 T33: -0.0842 T12: -0.0901 REMARK 3 T13: 0.2631 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.6945 L22: 10.1163 REMARK 3 L33: 3.2269 L12: 4.4741 REMARK 3 L13: 5.471 L23: 6.3445 REMARK 3 S TENSOR REMARK 3 S11: 0.2704 S12: -0.6354 S13: 0.4628 REMARK 3 S21: -0.6354 S22: 0.0577 S23: 0.8038 REMARK 3 S31: 0.4628 S32: 0.8038 S33: -0.3281 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|3 - 48} REMARK 3 ORIGIN FOR THE GROUP (A): 10.0924 35.1786 8.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.423 T22: -0.41 REMARK 3 T33: 0.0907 T12: 0.2161 REMARK 3 T13: 0.2058 T23: 0.0719 REMARK 3 L TENSOR REMARK 3 L11: 10.2337 L22: 12.0863 REMARK 3 L33: 11.7163 L12: 3.6078 REMARK 3 L13: 3.1628 L23: 2.1639 REMARK 3 S TENSOR REMARK 3 S11: -0.1441 S12: 1.0989 S13: 0.584 REMARK 3 S21: 1.0989 S22: 0.4037 S23: 0.6517 REMARK 3 S31: 0.584 S32: 0.6517 S33: -0.2596 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|49 - 64} REMARK 3 ORIGIN FOR THE GROUP (A): -2.8099 15.5152 -13.2226 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: -0.3366 REMARK 3 T33: -0.0839 T12: 0.0058 REMARK 3 T13: 0.0089 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0 L22: 3.6972 REMARK 3 L33: 6.441 L12: 4.9175 REMARK 3 L13: -0.9677 L23: 2.989 REMARK 3 S TENSOR REMARK 3 S11: 0.4289 S12: 0.9086 S13: -0.4801 REMARK 3 S21: 0.9086 S22: 0.1779 S23: -0.2457 REMARK 3 S31: -0.4801 S32: -0.2457 S33: -0.6068 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {C|*} REMARK 3 ORIGIN FOR THE GROUP (A): -4.7304 -3.4192 -8.0845 REMARK 3 T TENSOR REMARK 3 T11: 0.5812 T22: -0.4055 REMARK 3 T33: -0.4124 T12: 0.0609 REMARK 3 T13: 0.1347 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.5382 L22: 16.4172 REMARK 3 L33: 22.6446 L12: -6.0574 REMARK 3 L13: 4.2485 L23: 5.5944 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.3104 S13: 0.1005 REMARK 3 S21: -0.3104 S22: 0.2458 S23: -0.7817 REMARK 3 S31: 0.1005 S32: -0.7817 S33: -0.2447 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {D|*} REMARK 3 ORIGIN FOR THE GROUP (A): 6.0581 38.3726 7.8343 REMARK 3 T TENSOR REMARK 3 T11: 0.6212 T22: -0.5236 REMARK 3 T33: 0.1408 T12: 0.1698 REMARK 3 T13: 0.1845 T23: 0.1243 REMARK 3 L TENSOR REMARK 3 L11: 11.0691 L22: 1.1827 REMARK 3 L33: 5.9889 L12: 8.7312 REMARK 3 L13: 6.7298 L23: -0.4673 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.7902 S13: -0.3812 REMARK 3 S21: 0.7902 S22: 0.1269 S23: -0.0049 REMARK 3 S31: -0.3812 S32: -0.0049 S33: -0.0831 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792368 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9869 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 1.09700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4HAE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.01 M REMARK 280 MAGNESIUM CHLORIDE, 0.1 M SODIUM CACODYLATE, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.95000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.65000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.30000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.65000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 133.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 62 REMARK 465 ASP A 63 REMARK 465 LYS A 64 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 ACE C 18 REMARK 465 GLN C 19 REMARK 465 ACE D 18 REMARK 465 GLN D 19 REMARK 465 LEU D 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 22 CD CE NZ REMARK 470 LYS A 30 CE NZ REMARK 470 ILE A 52 CD1 REMARK 470 SER A 61 OG REMARK 470 SER B 3 OG REMARK 470 ILE B 12 CD1 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 22 CD CE NZ REMARK 470 LYS B 30 CE NZ REMARK 470 ILE B 52 CD1 REMARK 470 SER B 61 OG REMARK 470 LYS B 64 C O CB CG CD CE NZ REMARK 470 LEU C 20 CG CD1 CD2 REMARK 470 THR C 22 OG1 CG2 REMARK 470 LYS C 23 NZ REMARK 470 LYS D 23 CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG C 26 and M3L C REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide M3L C 27 and SER C REMARK 800 28 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide TYR C 33 and NH2 C REMARK 800 34 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ARG D 26 and M3L D REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide M3L D 27 and SER D REMARK 800 28 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide TYR D 33 and NH2 D REMARK 800 34 DBREF 6V3N A 2 64 UNP Q8N8U2 CDYL2_HUMAN 2 64 DBREF 6V3N B 2 64 UNP Q8N8U2 CDYL2_HUMAN 2 64 DBREF 6V3N C 18 34 PDB 6V3N 6V3N 18 34 DBREF 6V3N D 18 34 PDB 6V3N 6V3N 18 34 SEQADV 6V3N GLY A 1 UNP Q8N8U2 EXPRESSION TAG SEQADV 6V3N GLY B 1 UNP Q8N8U2 EXPRESSION TAG SEQRES 1 A 64 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 A 64 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 A 64 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 A 64 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 A 64 ASP GLU PHE ASN GLY LEU HIS MET SER LYS ASP LYS SEQRES 1 B 64 GLY ALA SER GLY ASP LEU TYR GLU VAL GLU ARG ILE VAL SEQRES 2 B 64 ASP LYS ARG LYS ASN LYS LYS GLY LYS TRP GLU TYR LEU SEQRES 3 B 64 ILE ARG TRP LYS GLY TYR GLY SER THR GLU ASP THR TRP SEQRES 4 B 64 GLU PRO GLU HIS HIS LEU LEU HIS CYS GLU GLU PHE ILE SEQRES 5 B 64 ASP GLU PHE ASN GLY LEU HIS MET SER LYS ASP LYS SEQRES 1 C 17 ACE GLN LEU ALA THR LYS ALA ALA ARG M3L SER ALA PRO SEQRES 2 C 17 ALA THR TYR NH2 SEQRES 1 D 17 ACE GLN LEU ALA THR LYS ALA ALA ARG M3L SER ALA PRO SEQRES 2 D 17 ALA THR TYR NH2 HET M3L C 27 12 HET NH2 C 34 1 HET M3L D 27 12 HET NH2 D 34 1 HET UNX A 101 1 HET UNX A 102 1 HET UNX A 103 1 HET UNX A 104 1 HET UNX A 105 1 HET UNX A 106 1 HET UNX A 107 1 HET UNX A 108 1 HET UNX A 109 1 HET UNX A 110 1 HET UNX B 101 1 HET UNX B 102 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM NH2 AMINO GROUP HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 3 NH2 2(H2 N) FORMUL 5 UNX 12(X) HELIX 1 AA1 GLY A 33 ASP A 37 5 5 HELIX 2 AA2 GLY B 33 ASP B 37 5 5 HELIX 3 AA3 ASP B 53 SER B 61 1 9 SHEET 1 AA1 5 THR A 38 PRO A 41 0 SHEET 2 AA1 5 TRP A 23 TRP A 29 -1 N TYR A 25 O GLU A 40 SHEET 3 AA1 5 ASP A 5 LYS A 17 -1 N ARG A 11 O ARG A 28 SHEET 4 AA1 5 THR C 22 M3L C 27 -1 O LYS C 23 N VAL A 9 SHEET 5 AA1 5 LEU A 45 CYS A 48 -1 N LEU A 46 O ALA C 24 SHEET 1 AA2 5 THR B 38 PRO B 41 0 SHEET 2 AA2 5 TRP B 23 TRP B 29 -1 N TYR B 25 O GLU B 40 SHEET 3 AA2 5 LEU B 6 LYS B 17 -1 N ARG B 11 O ARG B 28 SHEET 4 AA2 5 THR D 22 ARG D 26 -1 O LYS D 23 N VAL B 9 SHEET 5 AA2 5 LEU B 45 CYS B 48 -1 N CYS B 48 O THR D 22 SSBOND 1 CYS A 48 CYS A 48 1555 5555 2.82 SSBOND 2 CYS B 48 CYS B 48 1555 5555 2.61 LINK C ARG C 26 N M3L C 27 1555 1555 1.33 LINK C M3L C 27 N SER C 28 1555 1555 1.34 LINK C TYR C 33 N NH2 C 34 1555 1555 1.33 LINK C ARG D 26 N M3L D 27 1555 1555 1.33 LINK C M3L D 27 N SER D 28 1555 1555 1.34 LINK C TYR D 33 N NH2 D 34 1555 1555 1.33 CISPEP 1 ALA C 29 PRO C 30 0 3.01 CISPEP 2 ALA D 29 PRO D 30 0 2.50 SITE 1 AC1 11 SER A 3 GLY A 4 ASP A 5 GLU A 8 SITE 2 AC1 11 TRP A 29 TYR A 32 GLU A 40 HIS A 44 SITE 3 AC1 11 ALA C 25 SER C 28 ALA C 29 SITE 1 AC2 10 GLY A 4 ASP A 5 TRP A 29 TYR A 32 SITE 2 AC2 10 GLU A 40 HIS A 44 ARG C 26 ALA C 29 SITE 3 AC2 10 PRO C 30 ALA C 31 SITE 1 AC3 5 THR A 35 ASP A 37 TRP A 39 THR C 32 SITE 2 AC3 5 ALA D 31 SITE 1 AC4 13 SER B 3 GLY B 4 ASP B 5 TYR B 7 SITE 2 AC4 13 GLU B 8 TRP B 29 TYR B 32 GLU B 40 SITE 3 AC4 13 HIS B 44 THR D 22 ALA D 25 SER D 28 SITE 4 AC4 13 ALA D 29 SITE 1 AC5 11 GLY B 4 ASP B 5 TYR B 7 TRP B 29 SITE 2 AC5 11 TYR B 32 GLU B 40 HIS B 44 ARG D 26 SITE 3 AC5 11 ALA D 29 PRO D 30 ALA D 31 SITE 1 AC6 6 THR B 35 ASP B 37 THR B 38 TRP B 39 SITE 2 AC6 6 ALA C 31 THR D 32 CRYST1 60.792 60.792 178.600 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016450 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005599 0.00000