HEADER HYDROLASE 26-NOV-19 6V3U TITLE CRYSTAL STRUCTURE OF THE NDM_FIM-1 LIKE METALLO-BETA-LACTAMASE FROM TITLE 2 ERYTHROBACTER LITORALIS IN THE MONO-ZINC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE II; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERYTHROBACTER LITORALIS (STRAIN HTCC2594); SOURCE 3 ORGANISM_TAXID: 314225; SOURCE 4 STRAIN: HTCC2594; SOURCE 5 GENE: ELI_07580; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS METALLO BETA LACTAMASE, LACTAM ANTIBIOTICS, STRUCTURAL GENOMICS, KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,R.MULLIGAN,M.ENDRES,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 03-APR-24 6V3U 1 LINK REVDAT 1 15-JAN-20 6V3U 0 JRNL AUTH Y.KIM,N.MALTSEVA,R.MULLIGAN,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE NDM_FIM-1 LIKE JRNL TITL 2 METALLO-BETA-LACTAMASE FROM ERYTHROBACTER LITORALIS IN THE JRNL TITL 3 MONO-ZINC FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 29886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6100 - 4.3000 1.00 2991 179 0.1711 0.1961 REMARK 3 2 4.3000 - 3.4200 1.00 3001 138 0.1842 0.2263 REMARK 3 3 3.4200 - 2.9800 1.00 2907 171 0.2227 0.2697 REMARK 3 4 2.9800 - 2.7100 1.00 2967 140 0.2405 0.2874 REMARK 3 5 2.7100 - 2.5200 0.99 2955 133 0.2308 0.2892 REMARK 3 6 2.5200 - 2.3700 0.99 2927 164 0.2197 0.2813 REMARK 3 7 2.3700 - 2.2500 0.99 2908 142 0.2470 0.3737 REMARK 3 8 2.2500 - 2.1500 0.99 2938 158 0.2806 0.3404 REMARK 3 9 2.1500 - 2.0700 0.96 2816 121 0.2975 0.3044 REMARK 3 10 2.0700 - 2.0000 0.69 2015 115 0.3598 0.3847 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.283 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3364 REMARK 3 ANGLE : 0.836 4586 REMARK 3 CHIRALITY : 0.052 514 REMARK 3 PLANARITY : 0.005 600 REMARK 3 DIHEDRAL : 18.719 1952 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5253 6.1309 -5.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.5580 T22: 1.0484 REMARK 3 T33: 0.5874 T12: -0.0945 REMARK 3 T13: 0.0998 T23: -0.2674 REMARK 3 L TENSOR REMARK 3 L11: 4.0848 L22: 3.5438 REMARK 3 L33: 4.6687 L12: 0.4692 REMARK 3 L13: 1.3102 L23: 1.3557 REMARK 3 S TENSOR REMARK 3 S11: -0.1743 S12: 0.8562 S13: -0.1995 REMARK 3 S21: -0.4798 S22: 0.7598 S23: -0.7970 REMARK 3 S31: -0.2729 S32: 1.7242 S33: -0.5492 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8875 14.4467 -3.9067 REMARK 3 T TENSOR REMARK 3 T11: 0.6842 T22: 0.8864 REMARK 3 T33: 0.4532 T12: -0.2735 REMARK 3 T13: 0.1746 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 4.5289 L22: 3.5704 REMARK 3 L33: 7.9500 L12: -1.5771 REMARK 3 L13: 2.9426 L23: 3.2502 REMARK 3 S TENSOR REMARK 3 S11: -0.5182 S12: 0.0827 S13: 0.3893 REMARK 3 S21: -0.3560 S22: 0.5020 S23: -0.3183 REMARK 3 S31: -1.4850 S32: 1.1793 S33: -0.1159 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1638 15.0168 -2.6606 REMARK 3 T TENSOR REMARK 3 T11: 0.6542 T22: 0.4374 REMARK 3 T33: 0.4229 T12: -0.0393 REMARK 3 T13: 0.0220 T23: 0.0812 REMARK 3 L TENSOR REMARK 3 L11: 7.1042 L22: 5.6646 REMARK 3 L33: 4.1896 L12: 0.8941 REMARK 3 L13: -1.2607 L23: 2.4510 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.8972 S13: 0.5388 REMARK 3 S21: -0.7246 S22: 0.1381 S23: -0.1878 REMARK 3 S31: -1.1197 S32: 0.1123 S33: -0.2017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1279 4.3813 14.0796 REMARK 3 T TENSOR REMARK 3 T11: 0.4810 T22: 0.3944 REMARK 3 T33: 0.4430 T12: -0.0574 REMARK 3 T13: -0.0455 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 4.6974 L22: 3.9624 REMARK 3 L33: 8.5466 L12: 2.3420 REMARK 3 L13: 2.3227 L23: 2.4551 REMARK 3 S TENSOR REMARK 3 S11: 0.4398 S12: -0.2514 S13: -0.4384 REMARK 3 S21: 0.7246 S22: -0.0441 S23: -0.1981 REMARK 3 S31: 0.4482 S32: 0.2902 S33: -0.3530 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0385 12.7280 41.5574 REMARK 3 T TENSOR REMARK 3 T11: 1.0259 T22: 0.5137 REMARK 3 T33: 0.5385 T12: -0.1566 REMARK 3 T13: -0.2106 T23: 0.0825 REMARK 3 L TENSOR REMARK 3 L11: 3.7071 L22: 3.4238 REMARK 3 L33: 4.0935 L12: -0.7296 REMARK 3 L13: 1.3678 L23: 1.2471 REMARK 3 S TENSOR REMARK 3 S11: 0.7581 S12: -0.2841 S13: -0.7973 REMARK 3 S21: 0.7234 S22: -0.0849 S23: -0.0965 REMARK 3 S31: 1.7403 S32: -0.2858 S33: 0.5147 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9487 27.9625 38.7086 REMARK 3 T TENSOR REMARK 3 T11: 0.5228 T22: 0.7333 REMARK 3 T33: 0.5297 T12: -0.0659 REMARK 3 T13: 0.0418 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 4.5064 L22: 4.3449 REMARK 3 L33: 5.4642 L12: -0.9516 REMARK 3 L13: 2.2463 L23: -1.6084 REMARK 3 S TENSOR REMARK 3 S11: 0.2280 S12: -0.7180 S13: -0.2475 REMARK 3 S21: 0.5998 S22: -0.0487 S23: 0.5669 REMARK 3 S31: -0.0005 S32: -1.1256 S33: 0.0693 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 176 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8679 21.4750 21.8308 REMARK 3 T TENSOR REMARK 3 T11: 0.4472 T22: 0.5822 REMARK 3 T33: 0.5567 T12: -0.0629 REMARK 3 T13: -0.0014 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.0701 L22: 3.4329 REMARK 3 L33: 8.1092 L12: 0.4816 REMARK 3 L13: 1.5405 L23: 2.2019 REMARK 3 S TENSOR REMARK 3 S11: -0.2187 S12: 0.6754 S13: -0.1542 REMARK 3 S21: -0.1709 S22: 0.2892 S23: 0.0995 REMARK 3 S31: 0.0195 S32: 0.3975 S33: 0.0067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3535 19.7818 22.3266 REMARK 3 T TENSOR REMARK 3 T11: 0.5800 T22: 0.7496 REMARK 3 T33: 0.6577 T12: -0.0680 REMARK 3 T13: -0.0254 T23: -0.1229 REMARK 3 L TENSOR REMARK 3 L11: 5.6671 L22: 8.4712 REMARK 3 L33: 3.3549 L12: 3.2409 REMARK 3 L13: -0.3563 L23: 1.0875 REMARK 3 S TENSOR REMARK 3 S11: -0.2478 S12: 0.8225 S13: -0.3814 REMARK 3 S21: -0.4660 S22: 0.5409 S23: -1.2787 REMARK 3 S31: 0.8700 S32: 0.5088 S33: 0.2075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: THE UN-DEPOSITED STRUCTURE OF THE SAME PROTEIN IN REMARK 200 THE APO-FORM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 7.5, 10 % (W/V) ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.25100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.12550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.37650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 20 REMARK 465 ASN A 21 REMARK 465 ALA A 22 REMARK 465 ARG A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 VAL A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 GLN A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 32 REMARK 465 ARG A 33 REMARK 465 ASP A 34 REMARK 465 SER A 137 REMARK 465 ASN A 138 REMARK 465 GLU A 139 REMARK 465 LEU A 140 REMARK 465 ALA A 141 REMARK 465 PRO A 142 REMARK 465 GLU A 143 REMARK 465 GLU A 144 REMARK 465 GLY A 145 REMARK 465 LEU A 146 REMARK 465 VAL A 147 REMARK 465 PRO A 148 REMARK 465 SER B 20 REMARK 465 ASN B 21 REMARK 465 ALA B 22 REMARK 465 ARG B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 VAL B 26 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 GLN B 29 REMARK 465 GLU B 30 REMARK 465 ALA B 31 REMARK 465 ASP B 32 REMARK 465 ARG B 33 REMARK 465 ASP B 34 REMARK 465 SER B 137 REMARK 465 ASN B 138 REMARK 465 GLU B 139 REMARK 465 LEU B 140 REMARK 465 ALA B 141 REMARK 465 PRO B 142 REMARK 465 GLU B 143 REMARK 465 GLU B 144 REMARK 465 GLY B 145 REMARK 465 LEU B 146 REMARK 465 VAL B 147 REMARK 465 PRO B 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 143.67 72.06 REMARK 500 ARG A 183 56.34 -141.72 REMARK 500 ALA A 216 -169.50 -104.15 REMARK 500 ASP B 82 142.09 73.82 REMARK 500 LYS B 117 59.88 -92.13 REMARK 500 HIS B 181 -0.72 65.21 REMARK 500 PHE B 232 69.70 -119.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 ND1 REMARK 620 2 HIS A 114 NE2 112.6 REMARK 620 3 HIS A 242 NE2 110.9 108.9 REMARK 620 4 ASP B 215 OD1 115.2 97.3 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 215 OD1 REMARK 620 2 HIS B 112 ND1 119.1 REMARK 620 3 HIS B 114 NE2 92.3 107.2 REMARK 620 4 HIS B 242 NE2 107.9 112.9 116.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP06557 RELATED DB: TARGETTRACK DBREF 6V3U A 23 261 UNP Q2N9N3 Q2N9N3_ERYLH 23 261 DBREF 6V3U B 23 261 UNP Q2N9N3 Q2N9N3_ERYLH 23 261 SEQADV 6V3U SER A 20 UNP Q2N9N3 EXPRESSION TAG SEQADV 6V3U ASN A 21 UNP Q2N9N3 EXPRESSION TAG SEQADV 6V3U ALA A 22 UNP Q2N9N3 EXPRESSION TAG SEQADV 6V3U SER B 20 UNP Q2N9N3 EXPRESSION TAG SEQADV 6V3U ASN B 21 UNP Q2N9N3 EXPRESSION TAG SEQADV 6V3U ALA B 22 UNP Q2N9N3 EXPRESSION TAG SEQRES 1 A 242 SER ASN ALA ARG SER SER VAL ALA GLU GLN GLU ALA ASP SEQRES 2 A 242 ARG ASP ILE ILE ARG PHE GLY GLU VAL SER PHE SER GLN SEQRES 3 A 242 LEU ALA GLU GLY VAL TRP MSE HIS THR THR TYR LEU ASP SEQRES 4 A 242 LEU MSE GLY PHE GLY PRO ILE PRO SER ASN GLY LEU LEU SEQRES 5 A 242 VAL VAL ASN GLY ASP ASN THR ILE LEU VAL ASP THR ALA SEQRES 6 A 242 TRP THR ASP GLU GLN THR GLU GLN ILE VAL ALA TRP ALA SEQRES 7 A 242 SER MSE VAL LEU ALA LYS PRO VAL ARG ALA ALA VAL VAL SEQRES 8 A 242 THR HIS ALA HIS GLN ASP LYS MSE GLY GLY MSE ALA ALA SEQRES 9 A 242 LEU HIS GLY ALA ASN ILE ALA THR TRP ALA HIS PRO LEU SEQRES 10 A 242 SER ASN GLU LEU ALA PRO GLU GLU GLY LEU VAL PRO ALA SEQRES 11 A 242 ARG ASN ALA ILE THR PHE ASP ALA ASN GLY TRP ALA THR SEQRES 12 A 242 GLY GLU ALA ALA GLN SER LEU ALA PRO LEU ARG LEU TYR SEQRES 13 A 242 TYR PRO GLY GLY ALA HIS THR ARG ASP ASN ILE THR VAL SEQRES 14 A 242 GLY LEU PRO GLU LEU GLY ILE ALA PHE GLY GLY OCS MSE SEQRES 15 A 242 ILE LYS ALA GLY ASP ALA SER ASN LEU GLY ASN LEU ALA SEQRES 16 A 242 ASP ALA ASP THR ALA ALA TYR ALA GLN SER VAL ARG ASN SEQRES 17 A 242 PHE ALA ALA ALA PHE PRO ASP ALA ARG THR ILE ALA MSE SEQRES 18 A 242 SER HIS SER PRO PRO GLU GLY ARG LYS ALA ILE GLU ARG SEQRES 19 A 242 THR LEU ASP LEU ALA GLU GLU LEU SEQRES 1 B 242 SER ASN ALA ARG SER SER VAL ALA GLU GLN GLU ALA ASP SEQRES 2 B 242 ARG ASP ILE ILE ARG PHE GLY GLU VAL SER PHE SER GLN SEQRES 3 B 242 LEU ALA GLU GLY VAL TRP MSE HIS THR THR TYR LEU ASP SEQRES 4 B 242 LEU MSE GLY PHE GLY PRO ILE PRO SER ASN GLY LEU LEU SEQRES 5 B 242 VAL VAL ASN GLY ASP ASN THR ILE LEU VAL ASP THR ALA SEQRES 6 B 242 TRP THR ASP GLU GLN THR GLU GLN ILE VAL ALA TRP ALA SEQRES 7 B 242 SER MSE VAL LEU ALA LYS PRO VAL ARG ALA ALA VAL VAL SEQRES 8 B 242 THR HIS ALA HIS GLN ASP LYS MSE GLY GLY MSE ALA ALA SEQRES 9 B 242 LEU HIS GLY ALA ASN ILE ALA THR TRP ALA HIS PRO LEU SEQRES 10 B 242 SER ASN GLU LEU ALA PRO GLU GLU GLY LEU VAL PRO ALA SEQRES 11 B 242 ARG ASN ALA ILE THR PHE ASP ALA ASN GLY TRP ALA THR SEQRES 12 B 242 GLY GLU ALA ALA GLN SER LEU ALA PRO LEU ARG LEU TYR SEQRES 13 B 242 TYR PRO GLY GLY ALA HIS THR ARG ASP ASN ILE THR VAL SEQRES 14 B 242 GLY LEU PRO GLU LEU GLY ILE ALA PHE GLY GLY OCS MSE SEQRES 15 B 242 ILE LYS ALA GLY ASP ALA SER ASN LEU GLY ASN LEU ALA SEQRES 16 B 242 ASP ALA ASP THR ALA ALA TYR ALA GLN SER VAL ARG ASN SEQRES 17 B 242 PHE ALA ALA ALA PHE PRO ASP ALA ARG THR ILE ALA MSE SEQRES 18 B 242 SER HIS SER PRO PRO GLU GLY ARG LYS ALA ILE GLU ARG SEQRES 19 B 242 THR LEU ASP LEU ALA GLU GLU LEU MODRES 6V3U MSE A 52 MET MODIFIED RESIDUE MODRES 6V3U MSE A 60 MET MODIFIED RESIDUE MODRES 6V3U MSE A 99 MET MODIFIED RESIDUE MODRES 6V3U MSE A 118 MET MODIFIED RESIDUE MODRES 6V3U MSE A 121 MET MODIFIED RESIDUE MODRES 6V3U OCS A 200 CYS MODIFIED RESIDUE MODRES 6V3U MSE A 201 MET MODIFIED RESIDUE MODRES 6V3U MSE A 240 MET MODIFIED RESIDUE MODRES 6V3U MSE B 52 MET MODIFIED RESIDUE MODRES 6V3U MSE B 60 MET MODIFIED RESIDUE MODRES 6V3U MSE B 99 MET MODIFIED RESIDUE MODRES 6V3U MSE B 118 MET MODIFIED RESIDUE MODRES 6V3U MSE B 121 MET MODIFIED RESIDUE MODRES 6V3U OCS B 200 CYS MODIFIED RESIDUE MODRES 6V3U MSE B 201 MET MODIFIED RESIDUE MODRES 6V3U MSE B 240 MET MODIFIED RESIDUE HET MSE A 52 8 HET MSE A 60 8 HET MSE A 99 8 HET MSE A 118 8 HET MSE A 121 8 HET OCS A 200 9 HET MSE A 201 8 HET MSE A 240 16 HET MSE B 52 8 HET MSE B 60 8 HET MSE B 99 8 HET MSE B 118 8 HET MSE B 121 8 HET OCS B 200 9 HET MSE B 201 8 HET MSE B 240 16 HET ZN A 300 1 HET SO4 A 301 5 HET IPA A 302 4 HET EDO A 303 4 HET ZN B 300 1 HET SO4 B 301 5 HET IPA B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HETNAM MSE SELENOMETHIONINE HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM IPA ISOPROPYL ALCOHOL HETNAM EDO 1,2-ETHANEDIOL HETSYN IPA 2-PROPANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 IPA 2(C3 H8 O) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 13 HOH *57(H2 O) HELIX 1 AA1 THR A 86 VAL A 100 1 15 HELIX 2 AA2 GLY A 119 ALA A 127 1 9 HELIX 3 AA3 THR A 162 ALA A 170 1 9 HELIX 4 AA4 PRO A 191 LEU A 193 5 3 HELIX 5 AA5 ASN A 209 ASP A 215 1 7 HELIX 6 AA6 ASP A 217 PHE A 232 1 16 HELIX 7 AA7 ARG A 248 LEU A 261 1 14 HELIX 8 AA8 THR B 86 VAL B 100 1 15 HELIX 9 AA9 GLY B 119 ALA B 127 1 9 HELIX 10 AB1 THR B 162 ALA B 170 1 9 HELIX 11 AB2 PRO B 191 LEU B 193 5 3 HELIX 12 AB3 ASN B 209 ALA B 216 1 8 HELIX 13 AB4 ASP B 217 PHE B 232 1 16 HELIX 14 AB5 ARG B 248 LEU B 261 1 14 SHEET 1 AA1 8 ILE A 36 PHE A 38 0 SHEET 2 AA1 8 VAL A 41 ALA A 47 -1 O PHE A 43 N ILE A 36 SHEET 3 AA1 8 VAL A 50 LEU A 59 -1 O MSE A 52 N SER A 44 SHEET 4 AA1 8 GLY A 63 ASN A 74 -1 O LEU A 71 N TRP A 51 SHEET 5 AA1 8 ASN A 77 VAL A 81 -1 O VAL A 81 N LEU A 70 SHEET 6 AA1 8 VAL A 105 VAL A 109 1 O ARG A 106 N THR A 78 SHEET 7 AA1 8 ALA A 130 ALA A 133 1 O TRP A 132 N ALA A 108 SHEET 8 AA1 8 ASN A 151 ALA A 152 1 O ASN A 151 N ALA A 133 SHEET 1 AA2 5 ARG A 173 TYR A 175 0 SHEET 2 AA2 5 THR A 187 LEU A 190 -1 O THR A 187 N TYR A 175 SHEET 3 AA2 5 ILE A 195 GLY A 198 -1 O PHE A 197 N VAL A 188 SHEET 4 AA2 5 THR A 237 MSE A 240 1 O ALA A 239 N ALA A 196 SHEET 5 AA2 5 SER A 243 GLU A 246 -1 O GLU A 246 N ILE A 238 SHEET 1 AA3 8 ILE B 36 PHE B 38 0 SHEET 2 AA3 8 VAL B 41 ALA B 47 -1 O PHE B 43 N ILE B 36 SHEET 3 AA3 8 VAL B 50 LEU B 59 -1 O MSE B 52 N SER B 44 SHEET 4 AA3 8 GLY B 63 ASN B 74 -1 O LEU B 71 N TRP B 51 SHEET 5 AA3 8 ASN B 77 VAL B 81 -1 O VAL B 81 N LEU B 70 SHEET 6 AA3 8 VAL B 105 VAL B 109 1 O ALA B 107 N LEU B 80 SHEET 7 AA3 8 ALA B 130 ALA B 133 1 O ALA B 130 N ALA B 108 SHEET 8 AA3 8 ASN B 151 ALA B 152 1 O ASN B 151 N ALA B 133 SHEET 1 AA4 5 ARG B 173 TYR B 175 0 SHEET 2 AA4 5 THR B 187 LEU B 190 -1 O THR B 187 N TYR B 175 SHEET 3 AA4 5 ILE B 195 GLY B 198 -1 O PHE B 197 N VAL B 188 SHEET 4 AA4 5 THR B 237 MSE B 240 1 O ALA B 239 N ALA B 196 SHEET 5 AA4 5 SER B 243 GLU B 246 -1 O GLU B 246 N ILE B 238 LINK C TRP A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N HIS A 53 1555 1555 1.33 LINK C LEU A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N GLY A 61 1555 1555 1.33 LINK C SER A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N VAL A 100 1555 1555 1.33 LINK C LYS A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N GLY A 119 1555 1555 1.34 LINK C GLY A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N ALA A 122 1555 1555 1.34 LINK C GLY A 199 N OCS A 200 1555 1555 1.32 LINK C OCS A 200 N MSE A 201 1555 1555 1.32 LINK C MSE A 201 N ILE A 202 1555 1555 1.34 LINK C ALA A 239 N AMSE A 240 1555 1555 1.33 LINK C ALA A 239 N BMSE A 240 1555 1555 1.33 LINK C AMSE A 240 N SER A 241 1555 1555 1.34 LINK C BMSE A 240 N SER A 241 1555 1555 1.34 LINK C TRP B 51 N MSE B 52 1555 1555 1.33 LINK C MSE B 52 N HIS B 53 1555 1555 1.33 LINK C LEU B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N GLY B 61 1555 1555 1.33 LINK C SER B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N VAL B 100 1555 1555 1.33 LINK C LYS B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N GLY B 119 1555 1555 1.34 LINK C GLY B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N ALA B 122 1555 1555 1.34 LINK C GLY B 199 N OCS B 200 1555 1555 1.33 LINK C OCS B 200 N MSE B 201 1555 1555 1.32 LINK C MSE B 201 N ILE B 202 1555 1555 1.34 LINK C ALA B 239 N AMSE B 240 1555 1555 1.33 LINK C ALA B 239 N BMSE B 240 1555 1555 1.33 LINK C AMSE B 240 N SER B 241 1555 1555 1.33 LINK C BMSE B 240 N SER B 241 1555 1555 1.34 LINK ND1 HIS A 112 ZN ZN A 300 1555 1555 1.99 LINK NE2 HIS A 114 ZN ZN A 300 1555 1555 1.98 LINK OD1 ASP A 215 ZN ZN B 300 1555 1555 2.04 LINK NE2 HIS A 242 ZN ZN A 300 1555 1555 1.81 LINK ZN ZN A 300 OD1 ASP B 215 1555 1555 1.99 LINK ND1 HIS B 112 ZN ZN B 300 1555 1555 1.99 LINK NE2 HIS B 114 ZN ZN B 300 1555 1555 2.02 LINK NE2 HIS B 242 ZN ZN B 300 1555 1555 1.78 CISPEP 1 ALA A 170 PRO A 171 0 10.22 CISPEP 2 ALA B 170 PRO B 171 0 7.12 SITE 1 AC1 4 HIS A 112 HIS A 114 HIS A 242 ASP B 215 SITE 1 AC2 2 THR A 187 GLY A 199 SITE 1 AC3 1 TRP A 160 SITE 1 AC4 4 GLY A 163 GLU A 164 ALA A 165 HOH A 402 SITE 1 AC5 4 ASP A 215 HIS B 112 HIS B 114 HIS B 242 SITE 1 AC6 3 THR B 187 GLY B 199 PHE B 228 SITE 1 AC7 1 TRP B 160 SITE 1 AC8 3 GLY B 247 LYS B 249 EDO B 304 SITE 1 AC9 4 ARG B 236 ARG B 248 LYS B 249 EDO B 303 SITE 1 AD1 2 HOH B 418 HOH B 422 CRYST1 80.043 80.043 72.502 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012493 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013793 0.00000