HEADER TRANSPORT PROTEIN 27-NOV-19 6V4B TITLE DECLIC N-TERMINAL DOMAIN 34-202 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUR_CHAN_LBD DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED DESULFOFUSTIS SP. PB-SRB1; SOURCE 3 ORGANISM_TAXID: 1385624; SOURCE 4 GENE: N839_03575; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, N-TERMINAL EXTENSION DOMAIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DELARUE,H.D.HU REVDAT 4 06-MAR-24 6V4B 1 REMARK REVDAT 3 01-JUL-20 6V4B 1 JRNL REVDAT 2 17-JUN-20 6V4B 1 JRNL REVDAT 1 03-JUN-20 6V4B 0 JRNL AUTH H.HU,R.J.HOWARD,U.BASTOLLA,E.LINDAHL,M.DELARUE JRNL TITL STRUCTURAL BASIS FOR ALLOSTERIC TRANSITIONS OF A MULTIDOMAIN JRNL TITL 2 PENTAMERIC LIGAND-GATED ION CHANNEL. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 13437 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32482881 JRNL DOI 10.1073/PNAS.1922701117 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1877 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 19 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2915 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2701 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2769 REMARK 3 BIN R VALUE (WORKING SET) : 0.2674 REMARK 3 BIN FREE R VALUE : 0.3225 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77330 REMARK 3 B22 (A**2) : -0.77330 REMARK 3 B33 (A**2) : 1.54670 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.117 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.106 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.114 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.106 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2664 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3618 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 913 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 76 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 385 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2664 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 335 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3315 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.83 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.5854 17.1970 -14.6724 REMARK 3 T TENSOR REMARK 3 T11: -0.0831 T22: -0.1461 REMARK 3 T33: -0.0164 T12: -0.0360 REMARK 3 T13: -0.0008 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.4365 L22: 0.4443 REMARK 3 L33: 1.2907 L12: 0.6225 REMARK 3 L13: -0.0743 L23: -0.0915 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.0335 S13: -0.3040 REMARK 3 S21: -0.0342 S22: -0.0493 S23: -0.0842 REMARK 3 S31: -0.2133 S32: 0.1050 S33: -0.0198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.7678 10.8264 14.7353 REMARK 3 T TENSOR REMARK 3 T11: -0.2101 T22: -0.1198 REMARK 3 T33: -0.0450 T12: -0.0094 REMARK 3 T13: 0.0021 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.9718 L22: 3.8507 REMARK 3 L33: 1.3985 L12: 1.2564 REMARK 3 L13: 0.0733 L23: -0.8071 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.0069 S13: 0.1931 REMARK 3 S21: 0.0794 S22: -0.0135 S23: 0.2343 REMARK 3 S31: -0.0571 S32: 0.2134 S33: 0.0386 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37644 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 6.5, 0.7 M NAH2PO4, 0.7 REMARK 280 M KH2PO4., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.08667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.17333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.63000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.71667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.54333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 PRO A 9 REMARK 465 THR A 10 REMARK 465 ARG A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 ILE A 14 REMARK 465 TRP A 15 REMARK 465 ILE A 16 REMARK 465 PHE A 17 REMARK 465 SER A 18 REMARK 465 PHE A 19 REMARK 465 LEU A 20 REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 TRP A 26 REMARK 465 CYS A 27 REMARK 465 THR A 28 REMARK 465 VAL A 29 REMARK 465 ALA A 30 REMARK 465 HIS A 31 REMARK 465 ALA A 32 REMARK 465 GLU A 33 REMARK 465 THR A 34 REMARK 465 GLU A 35 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 ILE A 199 REMARK 465 LYS A 200 REMARK 465 PRO A 201 REMARK 465 GLU A 202 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 GLN B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 THR B 10 REMARK 465 ARG B 11 REMARK 465 SER B 12 REMARK 465 LEU B 13 REMARK 465 ILE B 14 REMARK 465 TRP B 15 REMARK 465 ILE B 16 REMARK 465 PHE B 17 REMARK 465 SER B 18 REMARK 465 PHE B 19 REMARK 465 LEU B 20 REMARK 465 THR B 21 REMARK 465 SER B 22 REMARK 465 ILE B 23 REMARK 465 SER B 24 REMARK 465 ILE B 25 REMARK 465 TRP B 26 REMARK 465 CYS B 27 REMARK 465 THR B 28 REMARK 465 VAL B 29 REMARK 465 ALA B 30 REMARK 465 HIS B 31 REMARK 465 ALA B 32 REMARK 465 GLU B 33 REMARK 465 THR B 34 REMARK 465 GLU B 35 REMARK 465 SER B 196 REMARK 465 LEU B 197 REMARK 465 GLU B 198 REMARK 465 ILE B 199 REMARK 465 LYS B 200 REMARK 465 PRO B 201 REMARK 465 GLU B 202 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C10 EPE B 303 O HOH B 464 1.80 REMARK 500 O ASP A 115 C10 EPE A 303 2.02 REMARK 500 O ASP B 115 C9 EPE B 303 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 60 O1S EPE B 303 3664 0.78 REMARK 500 CD GLN A 60 O1S EPE B 303 3664 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 45 C GLU A 46 N -0.198 REMARK 500 GLU A 97 C LYS A 98 N -0.176 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 86 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 ILE B 86 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 GLU B 97 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 28.12 43.61 REMARK 500 ALA A 83 -75.79 -86.75 REMARK 500 LYS A 127 -30.30 -141.21 REMARK 500 GLU A 185 121.91 -37.57 REMARK 500 ALA B 83 -80.25 -83.64 REMARK 500 LYS B 127 -31.02 -141.27 REMARK 500 GLU B 185 122.07 -38.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 86 -10.88 REMARK 500 ILE B 45 11.71 REMARK 500 ILE B 86 -12.98 REMARK 500 GLU B 97 -12.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6V4A RELATED DB: PDB DBREF 6V4B A 1 202 UNP V4JF97 V4JF97_9DELT 1 202 DBREF 6V4B B 1 202 UNP V4JF97 V4JF97_9DELT 1 202 SEQRES 1 A 202 MET HIS ASN LEU GLN GLN LEU LEU PRO THR ARG SER LEU SEQRES 2 A 202 ILE TRP ILE PHE SER PHE LEU THR SER ILE SER ILE TRP SEQRES 3 A 202 CYS THR VAL ALA HIS ALA GLU THR GLU GLY ARG VAL GLN SEQRES 4 A 202 HIS PHE THR GLY TYR ILE GLU ASP GLY ARG GLY ILE PHE SEQRES 5 A 202 TYR SER LEU PRO ASP MET LYS GLN GLY ASP ILE ILE TYR SEQRES 6 A 202 ALA SER MET GLN ASN THR GLY GLY ASN LEU ASP PRO LEU SEQRES 7 A 202 VAL GLY ILE MET ALA GLU GLU ILE ASP PRO ALA VAL SER SEQRES 8 A 202 LEU GLY GLN VAL LEU GLU LYS ALA LEU ALA SER GLU ASN SEQRES 9 A 202 ASP LEU ILE SER GLU LEU THR ALA VAL ALA ASP ARG ILE SEQRES 10 A 202 PHE LEU GLY TRP ASP ASP ASP GLY GLY LYS GLY TYR SER SEQRES 11 A 202 ALA SER LEU GLU PHE THR ILE PRO ARG ASP GLY THR TYR SEQRES 12 A 202 HIS ILE PHE ALA GLY SER THR ILE THR ASN GLN ARG LEU SEQRES 13 A 202 ASP LYS PHE GLN PRO THR TYR THR THR GLY SER PHE GLN SEQRES 14 A 202 LEU ILE LEU GLY LEU ASN ALA PRO GLN VAL ILE SER GLY SEQRES 15 A 202 GLU GLY GLU PRO GLU GLY GLU VAL PHE ALA SER LEU ALA SEQRES 16 A 202 SER LEU GLU ILE LYS PRO GLU SEQRES 1 B 202 MET HIS ASN LEU GLN GLN LEU LEU PRO THR ARG SER LEU SEQRES 2 B 202 ILE TRP ILE PHE SER PHE LEU THR SER ILE SER ILE TRP SEQRES 3 B 202 CYS THR VAL ALA HIS ALA GLU THR GLU GLY ARG VAL GLN SEQRES 4 B 202 HIS PHE THR GLY TYR ILE GLU ASP GLY ARG GLY ILE PHE SEQRES 5 B 202 TYR SER LEU PRO ASP MET LYS GLN GLY ASP ILE ILE TYR SEQRES 6 B 202 ALA SER MET GLN ASN THR GLY GLY ASN LEU ASP PRO LEU SEQRES 7 B 202 VAL GLY ILE MET ALA GLU GLU ILE ASP PRO ALA VAL SER SEQRES 8 B 202 LEU GLY GLN VAL LEU GLU LYS ALA LEU ALA SER GLU ASN SEQRES 9 B 202 ASP LEU ILE SER GLU LEU THR ALA VAL ALA ASP ARG ILE SEQRES 10 B 202 PHE LEU GLY TRP ASP ASP ASP GLY GLY LYS GLY TYR SER SEQRES 11 B 202 ALA SER LEU GLU PHE THR ILE PRO ARG ASP GLY THR TYR SEQRES 12 B 202 HIS ILE PHE ALA GLY SER THR ILE THR ASN GLN ARG LEU SEQRES 13 B 202 ASP LYS PHE GLN PRO THR TYR THR THR GLY SER PHE GLN SEQRES 14 B 202 LEU ILE LEU GLY LEU ASN ALA PRO GLN VAL ILE SER GLY SEQRES 15 B 202 GLU GLY GLU PRO GLU GLY GLU VAL PHE ALA SER LEU ALA SEQRES 16 B 202 SER LEU GLU ILE LYS PRO GLU HET GOL A 301 14 HET GOL A 302 6 HET EPE A 303 15 HET PO4 A 304 5 HET PO4 A 305 5 HET GOL B 301 6 HET GOL B 302 6 HET EPE B 303 15 HET PO4 B 304 5 HET PO4 B 305 5 HETNAM GOL GLYCEROL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 3 GOL 4(C3 H8 O3) FORMUL 5 EPE 2(C8 H18 N2 O4 S) FORMUL 6 PO4 4(O4 P 3-) FORMUL 13 HOH *225(H2 O) HELIX 1 AA1 PRO A 88 LYS A 98 1 11 HELIX 2 AA2 SER A 102 PHE A 118 1 17 HELIX 3 AA3 ALA A 176 GLY A 182 5 7 HELIX 4 AA4 PRO B 88 LYS B 98 1 11 HELIX 5 AA5 SER B 102 PHE B 118 1 17 HELIX 6 AA6 ALA B 176 GLY B 182 5 7 SHEET 1 AA1 4 ARG A 37 ILE A 45 0 SHEET 2 AA1 4 GLY A 166 LEU A 174 -1 O GLY A 166 N ILE A 45 SHEET 3 AA1 4 ILE A 63 GLY A 73 -1 N SER A 67 O ILE A 171 SHEET 4 AA1 4 SER A 130 THR A 136 -1 O PHE A 135 N ILE A 64 SHEET 1 AA2 5 GLY A 120 ASP A 123 0 SHEET 2 AA2 5 PRO A 77 MET A 82 -1 N VAL A 79 O ASP A 122 SHEET 3 AA2 5 GLY A 141 SER A 149 -1 O GLY A 148 N LEU A 78 SHEET 4 AA2 5 ILE A 51 MET A 58 -1 N LEU A 55 O TYR A 143 SHEET 5 AA2 5 SER A 193 LEU A 194 -1 O SER A 193 N SER A 54 SHEET 1 AA3 4 ARG B 37 ILE B 45 0 SHEET 2 AA3 4 GLY B 166 LEU B 174 -1 O GLY B 166 N ILE B 45 SHEET 3 AA3 4 ILE B 63 GLY B 73 -1 N TYR B 65 O GLY B 173 SHEET 4 AA3 4 SER B 130 THR B 136 -1 O PHE B 135 N ILE B 64 SHEET 1 AA4 5 GLY B 120 ASP B 123 0 SHEET 2 AA4 5 PRO B 77 MET B 82 -1 N VAL B 79 O ASP B 122 SHEET 3 AA4 5 GLY B 141 SER B 149 -1 O HIS B 144 N MET B 82 SHEET 4 AA4 5 ILE B 51 MET B 58 -1 N LEU B 55 O TYR B 143 SHEET 5 AA4 5 SER B 193 LEU B 194 -1 O SER B 193 N SER B 54 SITE 1 AC1 5 GLU A 103 ASN A 104 ARG A 155 LYS A 158 SITE 2 AC1 5 ASP B 157 SITE 1 AC2 6 GLU A 103 ASP A 123 GLY A 125 GLY A 126 SITE 2 AC2 6 ILE A 151 THR A 152 SITE 1 AC3 7 ASP A 115 ARG A 116 PHE A 118 LEU A 119 SITE 2 AC3 7 GLY A 120 TRP A 121 PO4 A 305 SITE 1 AC4 5 GLU A 103 GLY A 126 ASN A 153 LEU B 156 SITE 2 AC4 5 ASP B 157 SITE 1 AC5 5 TRP A 121 ASP A 122 EPE A 303 HOH A 405 SITE 2 AC5 5 HOH A 423 SITE 1 AC6 6 ASP A 157 GLU B 103 ASN B 104 ARG B 155 SITE 2 AC6 6 LYS B 158 HOH B 425 SITE 1 AC7 6 GLU B 103 LEU B 110 ASP B 123 GLY B 125 SITE 2 AC7 6 GLY B 126 ILE B 151 SITE 1 AC8 10 GLN A 60 ASP B 115 ARG B 116 ILE B 117 SITE 2 AC8 10 PHE B 118 LEU B 119 GLY B 120 TRP B 121 SITE 3 AC8 10 PO4 B 305 HOH B 464 SITE 1 AC9 6 LEU A 156 GLU B 103 GLY B 126 THR B 152 SITE 2 AC9 6 ASN B 153 HOH B 441 SITE 1 AD1 5 TRP B 121 ASP B 122 EPE B 303 HOH B 402 SITE 2 AD1 5 HOH B 403 CRYST1 81.350 81.350 99.260 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012293 0.007097 0.000000 0.00000 SCALE2 0.000000 0.014194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010075 0.00000