HEADER VIRAL PROTEIN 03-DEC-19 6V53 TITLE THE CRYSTAL STRUCTURE OF THE 2009 H1N1 PA ENDONUCLEASE MUTANT I38T IN TITLE 2 COMPLEX WITH SJ000985494 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 655278; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE INFLUENZA INHIBITOR RESISTANCE, HYDROLASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 2 11-OCT-23 6V53 1 JRNL REVDAT 1 09-DEC-20 6V53 0 JRNL AUTH M.G.CUYPERS,P.J.SLAVISH,Z.RANKOVIC,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF THE 2009 H1N1 PA ENDONUCLEASE JRNL TITL 2 MUTANT I38T IN COMPLEX WITH SJ000985494 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17RC1_3605 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7200 - 3.7600 0.98 2769 147 0.1927 0.2625 REMARK 3 2 3.7600 - 2.9900 1.00 2684 121 0.2509 0.2833 REMARK 3 3 2.9900 - 2.6100 1.00 2651 117 0.2798 0.3172 REMARK 3 4 2.6100 - 2.3700 1.00 2621 142 0.3148 0.3863 REMARK 3 5 2.3700 - 2.2000 1.00 2584 153 0.3464 0.4174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14000 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 74.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.86550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.06750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.86550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.06750 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.86550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.06750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.86550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.06750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.86550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.06750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.86550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.06750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.86550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.06750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.86550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.86550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.06750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 ARG A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 LYS A 19 CE NZ REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 65 NE CZ NH1 NH2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 MET A 136 CG SD CE REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 170 O HOH A 301 2.08 REMARK 500 OE1 GLU A 100 O HOH A 302 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 30 -61.37 -102.89 REMARK 500 SER A 53 -166.40 -76.26 REMARK 500 ARG A 106 -158.27 -119.32 REMARK 500 GLU A 122 -42.46 68.33 REMARK 500 THR A 143 -61.08 63.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 89 OD2 98.6 REMARK 620 3 GLU A 100 OE2 168.1 91.2 REMARK 620 4 ILE A 101 O 85.0 92.2 87.8 REMARK 620 5 QPY A 201 O1 85.2 176.2 85.0 87.2 REMARK 620 6 QPY A 201 O2 91.0 103.4 93.4 164.3 77.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 OE1 REMARK 620 2 ASP A 89 OD1 84.3 REMARK 620 3 QPY A 201 O2 99.0 92.3 REMARK 620 4 QPY A 201 O3 101.3 168.0 76.5 REMARK 620 5 HOH A 302 O 168.5 84.3 82.5 90.1 REMARK 620 6 HOH A 307 O 83.7 92.4 174.8 98.6 95.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QPY A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QQ4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VPT RELATED DB: PDB REMARK 900 WT PAN09 WITH RO7 DBREF 6V53 A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 6V53 A 54 177 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 6V53 MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 6V53 THR A 38 UNP C6H0Y9 ILE 38 ENGINEERED MUTATION SEQADV 6V53 GLY A 51 UNP C6H0Y9 LINKER SEQADV 6V53 GLY A 52 UNP C6H0Y9 LINKER SEQADV 6V53 SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET QPY A 201 38 HET QQ4 A 202 48 HET MN A 203 1 HET MN A 204 1 HET SO4 A 205 5 HET SO4 A 206 5 HETNAM QPY BENZYL (2S)-2-(4-{[2-(6-AMINO-9H-PURIN-9-YL) HETNAM 2 QPY ETHYL]CARBAMOYL}-5-HYDROXY-6-OXO-1,6-DIHYDROPYRIMIDIN- HETNAM 3 QPY 2-YL)PYRROLIDINE-1-CARBOXYLATE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 QPY C24 H25 N9 O5 FORMUL 3 QQ4 C36 H56 N6 O6 FORMUL 4 MN 2(MN 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *52(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 GLU A 23 1 14 HELIX 3 AA3 GLU A 31 GLY A 52 1 22 HELIX 4 AA4 ASP A 64 GLY A 80 1 17 HELIX 5 AA5 GLU A 107 LYS A 120 1 14 HELIX 6 AA6 LYS A 139 ASP A 141 5 3 HELIX 7 AA7 ASP A 145 ARG A 166 1 22 HELIX 8 AA8 LEU A 168 SER A 175 1 8 SHEET 1 AA1 5 PHE A 57 ILE A 59 0 SHEET 2 AA1 5 LEU A 90 ASP A 92 -1 O TYR A 91 N GLU A 58 SHEET 3 AA1 5 ARG A 97 THR A 104 -1 O ARG A 97 N ASP A 92 SHEET 4 AA1 5 HIS A 125 SER A 130 1 O PHE A 129 N GLY A 102 SHEET 5 AA1 5 GLU A 135 ALA A 137 -1 O MET A 136 N ILE A 128 LINK NE2 HIS A 41 MN MN A 203 1555 1555 2.17 LINK OE1 GLU A 61 MN MN A 204 1555 1555 2.44 LINK OD2 ASP A 89 MN MN A 203 1555 1555 2.13 LINK OD1 ASP A 89 MN MN A 204 1555 1555 2.21 LINK OE2 GLU A 100 MN MN A 203 1555 1555 2.22 LINK O ILE A 101 MN MN A 203 1555 1555 2.19 LINK O1 QPY A 201 MN MN A 203 1555 1555 1.98 LINK O2 QPY A 201 MN MN A 203 1555 1555 2.52 LINK O2 QPY A 201 MN MN A 204 1555 1555 2.03 LINK O3 QPY A 201 MN MN A 204 1555 1555 2.33 LINK MN MN A 204 O HOH A 302 1555 1555 2.68 LINK MN MN A 204 O HOH A 307 1555 1555 2.33 SITE 1 AC1 11 TYR A 24 GLU A 26 THR A 38 HIS A 41 SITE 2 AC1 11 GLU A 61 ASP A 89 GLU A 100 ILE A 101 SITE 3 AC1 11 TYR A 111 MN A 203 MN A 204 SITE 1 AC2 3 MET A 12 PHE A 46 ILE A 59 SITE 1 AC3 5 HIS A 41 ASP A 89 GLU A 100 ILE A 101 SITE 2 AC3 5 QPY A 201 SITE 1 AC4 5 GLU A 61 ASP A 89 QPY A 201 HOH A 302 SITE 2 AC4 5 HOH A 307 SITE 1 AC5 4 GLU A 31 THR A 32 ASN A 33 LYS A 34 SITE 1 AC6 4 GLY A 52 SER A 53 ARG A 56 LYS A 94 CRYST1 89.731 89.731 132.135 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007568 0.00000