HEADER CELL ADHESION 03-DEC-19 6V55 TITLE FULL EXTRACELLULAR REGION OF ZEBRAFISH GPR126/ADGRG6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESION G-PROTEIN COUPLED RECEPTOR G6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G-PROTEIN COUPLED RECEPTOR 126; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ADHESION G-PROTEIN COUPLED RECEPTOR G6; COMPND 8 CHAIN: Q; COMPND 9 SYNONYM: G-PROTEIN COUPLED RECEPTOR 126; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: ADGRG6, GPR126; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 10 ORGANISM_COMMON: ZEBRAFISH; SOURCE 11 ORGANISM_TAXID: 7955; SOURCE 12 GENE: ADGRG6, GPR126; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ADHESION G-PROTEIN COUPLED RECEPTOR, MYELINATION, CALCIUM-BINDING, KEYWDS 2 CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.LEON,D.ARAC REVDAT 3 29-JUL-20 6V55 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 22-JAN-20 6V55 1 JRNL REVDAT 1 15-JAN-20 6V55 0 JRNL AUTH K.LEON,R.L.CUNNINGHAM,J.A.RIBACK,E.FELDMAN,J.LI,T.R.SOSNICK, JRNL AUTH 2 M.ZHAO,K.R.MONK,D.ARAC JRNL TITL STRUCTURAL BASIS FOR ADHESION G PROTEIN-COUPLED RECEPTOR JRNL TITL 2 GPR126 FUNCTION. JRNL REF NAT COMMUN V. 11 194 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 31924782 JRNL DOI 10.1038/S41467-019-14040-1 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 62.3 REMARK 3 NUMBER OF REFLECTIONS : 34405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9000 - 5.5900 1.00 4161 238 0.2137 0.2328 REMARK 3 2 5.5900 - 4.4400 1.00 4114 202 0.1647 0.1936 REMARK 3 3 4.4400 - 3.8800 1.00 4057 207 0.1637 0.2372 REMARK 3 4 3.8800 - 3.5200 1.00 4013 233 0.1931 0.2886 REMARK 3 5 3.5200 - 3.2700 0.89 3583 183 0.2245 0.3069 REMARK 3 6 3.2700 - 3.0800 0.76 3054 169 0.2472 0.3442 REMARK 3 7 3.0800 - 2.9200 0.67 2660 155 0.2727 0.3341 REMARK 3 8 2.9200 - 2.8000 0.55 2188 103 0.2974 0.3592 REMARK 3 9 2.8000 - 2.6900 0.43 1737 84 0.2927 0.3339 REMARK 3 10 2.6900 - 2.6000 0.33 1326 70 0.2957 0.3507 REMARK 3 11 2.6000 - 2.5200 0.23 909 58 0.2972 0.3770 REMARK 3 12 2.5200 - 2.4400 0.15 583 34 0.3113 0.3160 REMARK 3 13 2.4400 - 2.3800 0.07 268 16 0.2841 0.4169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.277 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6027 REMARK 3 ANGLE : 1.206 8218 REMARK 3 CHIRALITY : 0.068 1008 REMARK 3 PLANARITY : 0.008 1039 REMARK 3 DIHEDRAL : 7.487 857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8098 -38.5188 -68.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.2474 T22: 0.6011 REMARK 3 T33: 0.0376 T12: 0.2003 REMARK 3 T13: 0.0635 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.1432 L22: 0.0255 REMARK 3 L33: 0.1226 L12: 0.0564 REMARK 3 L13: 0.0232 L23: -0.0272 REMARK 3 S TENSOR REMARK 3 S11: -0.1804 S12: 0.3320 S13: -0.0948 REMARK 3 S21: -0.0186 S22: 0.1079 S23: -0.0937 REMARK 3 S31: 0.2056 S32: 0.1173 S33: -0.0987 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3206 -19.9876 -34.3247 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.3268 REMARK 3 T33: 0.1169 T12: 0.2655 REMARK 3 T13: -0.0277 T23: 0.1062 REMARK 3 L TENSOR REMARK 3 L11: 0.7932 L22: 0.2533 REMARK 3 L33: 0.1940 L12: -0.4146 REMARK 3 L13: -0.2446 L23: 0.0947 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0773 S13: 0.0910 REMARK 3 S21: 0.0164 S22: -0.0101 S23: -0.0268 REMARK 3 S31: 0.0367 S32: 0.0973 S33: 0.0197 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 555 THROUGH 768 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8425 -13.1115 -14.8999 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.0860 REMARK 3 T33: 0.0625 T12: 0.0750 REMARK 3 T13: 0.1011 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.8393 L22: 1.1969 REMARK 3 L33: 1.5438 L12: -0.2380 REMARK 3 L13: 0.0300 L23: -0.3362 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.0419 S13: -0.0973 REMARK 3 S21: 0.1830 S22: -0.0320 S23: 0.2801 REMARK 3 S31: 0.3021 S32: -0.1406 S33: -0.0711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'Q' AND (RESID 769 THROUGH 778 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.1413 -19.1958 -9.2304 REMARK 3 T TENSOR REMARK 3 T11: 0.4934 T22: 0.1987 REMARK 3 T33: 0.1881 T12: -0.0831 REMARK 3 T13: 0.0111 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 7.4859 L22: 6.0231 REMARK 3 L33: 3.1900 L12: -2.1475 REMARK 3 L13: -0.6415 L23: -3.9332 REMARK 3 S TENSOR REMARK 3 S11: -0.1055 S12: -0.3516 S13: -0.5420 REMARK 3 S21: 0.8882 S22: 0.3250 S23: 0.2945 REMARK 3 S31: 0.2415 S32: -0.2968 S33: -0.2137 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000238907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033, 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43044 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 47.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 25.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 20% (W/V) PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.72400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.48000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.72400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1141 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 37 REMARK 465 SER A 38 REMARK 465 THR A 352 REMARK 465 LEU A 353 REMARK 465 SER A 354 REMARK 465 CYS A 355 REMARK 465 SER A 356 REMARK 465 THR A 357 REMARK 465 ALA A 358 REMARK 465 ILE A 359 REMARK 465 THR A 360 REMARK 465 THR A 361 REMARK 465 LEU A 362 REMARK 465 SER A 363 REMARK 465 PRO A 364 REMARK 465 GLY A 365 REMARK 465 THR A 366 REMARK 465 ALA A 367 REMARK 465 ASP A 473 REMARK 465 VAL A 474 REMARK 465 ASN A 475 REMARK 465 LEU A 476 REMARK 465 THR A 828 REMARK 465 HIS A 829 REMARK 465 PHE A 830 REMARK 465 GLY A 831 REMARK 465 ILE A 832 REMARK 465 LEU A 833 REMARK 465 MET A 834 REMARK 465 ASP A 835 REMARK 465 VAL A 836 REMARK 465 SER A 837 REMARK 465 ARG A 838 REMARK 465 ALA A 839 REMARK 465 HIS A 840 REMARK 465 HIS A 841 REMARK 465 HIS A 842 REMARK 465 HIS A 843 REMARK 465 HIS A 844 REMARK 465 HIS A 845 REMARK 465 HIS A 846 REMARK 465 HIS A 847 REMARK 465 ASP Q 835 REMARK 465 VAL Q 836 REMARK 465 SER Q 837 REMARK 465 ARG Q 838 REMARK 465 ALA Q 839 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 215 CE NZ REMARK 470 MET A 220 CG SD CE REMARK 470 VAL A 295 CG1 CG2 REMARK 470 SER A 296 OG REMARK 470 ASP A 299 CG OD1 OD2 REMARK 470 GLN A 300 CG CD OE1 NE2 REMARK 470 ASN A 301 CG OD1 ND2 REMARK 470 LYS A 784 CG CD CE NZ REMARK 470 ASP A 785 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 297 CA - CB - CG2 ANGL. DEV. = 9.6 DEGREES REMARK 500 LEU A 448 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 86 116.33 -162.75 REMARK 500 TYR A 96 -78.55 -100.79 REMARK 500 ASP A 107 118.69 -161.10 REMARK 500 ASP A 134 -154.31 -97.44 REMARK 500 VAL A 137 103.18 60.24 REMARK 500 LYS A 139 -165.13 -113.95 REMARK 500 SER A 163 -167.90 -106.93 REMARK 500 THR A 191 -67.79 -94.93 REMARK 500 THR A 216 -158.15 -118.47 REMARK 500 ASP A 239 47.14 -98.20 REMARK 500 ILE A 240 52.48 -106.30 REMARK 500 ALA A 288 -100.28 53.50 REMARK 500 VAL A 295 -67.14 -126.31 REMARK 500 ASP A 298 104.23 -51.76 REMARK 500 GLN A 348 -166.93 -112.49 REMARK 500 LEU A 452 -127.23 -112.03 REMARK 500 ASN A 470 66.19 63.33 REMARK 500 PRO A 514 -164.94 -76.04 REMARK 500 ARG A 548 30.75 -87.27 REMARK 500 THR A 715 30.81 -91.30 REMARK 500 ASN A 753 68.66 -110.83 REMARK 500 ASN A 816 -152.43 -120.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1193 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1194 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1195 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1196 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1197 DISTANCE = 7.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 OE1 REMARK 620 2 ASP A 97 OD1 79.6 REMARK 620 3 ASP A 97 OD2 76.3 49.3 REMARK 620 4 ASP A 134 OD2 87.7 80.7 129.2 REMARK 620 5 SER A 136 O 85.8 147.9 152.1 70.2 REMARK 620 6 VAL A 137 O 76.7 130.9 83.3 139.6 71.7 REMARK 620 7 HOH A1038 O 176.6 101.0 101.4 95.8 95.2 100.5 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDFT9 RELATED DB: SASBDB DBREF 6V55 A 37 839 UNP C6KFA3 AGRG6_DANRE 37 839 DBREF 6V55 Q 828 839 UNP C6KFA3 AGRG6_DANRE 828 839 SEQADV 6V55 ALA A 37 UNP C6KFA3 SER 37 CONFLICT SEQADV 6V55 PHE A 234 UNP C6KFA3 LEU 234 CONFLICT SEQADV 6V55 GLU A 263 UNP C6KFA3 GLY 263 CONFLICT SEQADV 6V55 A UNP C6KFA3 ALA 377 DELETION SEQADV 6V55 A UNP C6KFA3 THR 378 DELETION SEQADV 6V55 A UNP C6KFA3 LEU 379 DELETION SEQADV 6V55 A UNP C6KFA3 THR 380 DELETION SEQADV 6V55 A UNP C6KFA3 VAL 381 DELETION SEQADV 6V55 A UNP C6KFA3 THR 382 DELETION SEQADV 6V55 A UNP C6KFA3 ILE 383 DELETION SEQADV 6V55 A UNP C6KFA3 THR 384 DELETION SEQADV 6V55 A UNP C6KFA3 SER 385 DELETION SEQADV 6V55 A UNP C6KFA3 ILE 386 DELETION SEQADV 6V55 A UNP C6KFA3 ALA 387 DELETION SEQADV 6V55 A UNP C6KFA3 THR 388 DELETION SEQADV 6V55 A UNP C6KFA3 THR 389 DELETION SEQADV 6V55 A UNP C6KFA3 ASN 390 DELETION SEQADV 6V55 A UNP C6KFA3 ILE 391 DELETION SEQADV 6V55 A UNP C6KFA3 ILE 392 DELETION SEQADV 6V55 A UNP C6KFA3 PRO 393 DELETION SEQADV 6V55 A UNP C6KFA3 THR 394 DELETION SEQADV 6V55 A UNP C6KFA3 ASN 395 DELETION SEQADV 6V55 A UNP C6KFA3 ALA 396 DELETION SEQADV 6V55 A UNP C6KFA3 THR 397 DELETION SEQADV 6V55 A UNP C6KFA3 THR 398 DELETION SEQADV 6V55 A UNP C6KFA3 HIS 399 DELETION SEQADV 6V55 ILE A 461 UNP C6KFA3 THR 461 CONFLICT SEQADV 6V55 TRP A 804 UNP C6KFA3 CYS 804 CONFLICT SEQADV 6V55 HIS A 840 UNP C6KFA3 EXPRESSION TAG SEQADV 6V55 HIS A 841 UNP C6KFA3 EXPRESSION TAG SEQADV 6V55 HIS A 842 UNP C6KFA3 EXPRESSION TAG SEQADV 6V55 HIS A 843 UNP C6KFA3 EXPRESSION TAG SEQADV 6V55 HIS A 844 UNP C6KFA3 EXPRESSION TAG SEQADV 6V55 HIS A 845 UNP C6KFA3 EXPRESSION TAG SEQADV 6V55 HIS A 846 UNP C6KFA3 EXPRESSION TAG SEQADV 6V55 HIS A 847 UNP C6KFA3 EXPRESSION TAG SEQRES 1 A 788 ALA SER THR SER CYS ASN VAL VAL LEU THR ASP SER GLN SEQRES 2 A 788 GLY SER PHE THR SER PRO CYS TYR PRO ASN ASP TYR PRO SEQRES 3 A 788 PRO SER GLN SER CYS ASN TRP THR ILE GLN ALA PRO ALA SEQRES 4 A 788 GLY PHE ILE VAL GLN ILE THR PHE LEU ASP PHE GLU LEU SEQRES 5 A 788 GLU GLU ALA GLN GLY CYS ILE TYR ASP ARG VAL VAL VAL SEQRES 6 A 788 LYS THR GLY THR SER ASP ALA LYS PHE CYS GLY LEU THR SEQRES 7 A 788 ALA ASN GLY LEU THR LEU ASN SER THR GLY ASN VAL MET SEQRES 8 A 788 GLU VAL PHE PHE ASN SER ASP PHE SER VAL GLN LYS LYS SEQRES 9 A 788 GLY PHE HIS ILE SER TYR LYS GLN VAL ALA VAL THR LEU SEQRES 10 A 788 ARG ASN GLN LYS VAL THR MET PRO LYS SER SER LYS THR SEQRES 11 A 788 ILE LEU ARG VAL SER ASN SER ILE SER ILE PRO VAL LEU SEQRES 12 A 788 THR ALA PHE THR VAL CYS PHE GLU ILE ALA ARG THR ALA SEQRES 13 A 788 GLN LYS ALA THR GLU THR ILE PHE THR LEU SER ASP ALA SEQRES 14 A 788 ALA GLY THR SER ILE LEU ALA PHE GLU LYS THR SER ASN SEQRES 15 A 788 GLY MET GLU LEU PHE ILE GLY ALA SER TYR CYS SER VAL SEQRES 16 A 788 ASP ASN PHE LEU THR SER SER ASP ILE THR ALA THR MET SEQRES 17 A 788 LYS PRO LEU CYS LEU THR TRP THR LYS SER SER GLY LEU SEQRES 18 A 788 ILE GLY VAL TYR PHE GLU GLY HIS TYR PHE SER SER ILE SEQRES 19 A 788 CYS SER ALA SER GLN ILE TYR THR LEU GLN SER GLY GLY SEQRES 20 A 788 LEU LEU GLN ILE ALA GLY LYS GLY SER SER SER VAL SER SEQRES 21 A 788 VAL ASP ASP GLN ASN LEU ASP GLY PHE ILE TYR ASN PHE SEQRES 22 A 788 ARG LEU TRP ASP HIS ALA MET LEU SER SER GLU LEU SER SEQRES 23 A 788 ALA LEU THR CYS ASP THR VAL GLY ASN VAL VAL ASP TRP SEQRES 24 A 788 ASP HIS SER TYR TRP THR ILE PRO GLY SER SER THR GLN SEQRES 25 A 788 THR ASP SER THR LEU SER CYS SER THR ALA ILE THR THR SEQRES 26 A 788 LEU SER PRO GLY THR ALA GLY CYS ALA SER GLY LEU GLY SEQRES 27 A 788 CYS PRO GLU ASP ILE PHE TYR ARG SER THR LEU VAL VAL SEQRES 28 A 788 THR ASP GLU GLN THR PRO ASP ARG ASP ALA THR ALA ILE SEQRES 29 A 788 ILE SER GLN TRP LEU ASN GLN THR PHE GLN ASN TRP MET SEQRES 30 A 788 TYR ARG VAL TYR VAL ASP GLY ILE SER LEU GLN LEU ILE SEQRES 31 A 788 THR VAL LEU SER ARG ILE THR THR THR ARG GLN ILE TYR SEQRES 32 A 788 LEU ALA LEU LEU VAL TYR LYS ASN THR THR ASP VAL ASN SEQRES 33 A 788 LEU ALA GLU VAL GLU ILE GLU SER MET LEU ARG SER ALA SEQRES 34 A 788 PRO ALA ILE GLY ASN GLY LEU THR LEU ASP SER VAL THR SEQRES 35 A 788 VAL ASN LEU MET GLU ASN CYS GLN ALA ASP GLU PHE PRO SEQRES 36 A 788 VAL HIS TYR ARG TRP PRO GLU SER ARG PRO THR VAL THR SEQRES 37 A 788 GLN TYR VAL PRO CYS PHE PRO TYR LYS ASP ARG ASN ALA SEQRES 38 A 788 SER ARG THR CYS MET ILE ASN ARG ASP ASN TYR THR SER SEQRES 39 A 788 PHE TRP ALA LEU PRO ASP ARG GLY ASN CYS THR ASN ILE SEQRES 40 A 788 THR SER ILE THR VAL SER GLN GLU ASN ALA MET ASP VAL SEQRES 41 A 788 ALA VAL GLN LEU ALA ASP ILE SER ASN ASN GLY LEU SER SEQRES 42 A 788 LYS GLU GLU LEU THR GLN VAL VAL THR LYS VAL MET GLU SEQRES 43 A 788 LEU VAL ASN ILE ALA LYS ILE ASN ALA THR LEU ALA SER SEQRES 44 A 788 THR VAL VAL THR ILE ILE SER ASN VAL MET VAL SER SER SEQRES 45 A 788 GLU ASP ALA GLN LYS ASP ALA SER GLU THR ALA LEU LYS SEQRES 46 A 788 ALA VAL ASP GLU LEU VAL GLN LYS ILE GLU PHE ASP GLY SEQRES 47 A 788 PRO SER LEU THR ILE SER SER LYS ASN LEU VAL VAL GLY SEQRES 48 A 788 VAL SER ALA LEU ASP THR THR ASN PHE ASN GLY SER THR SEQRES 49 A 788 LEU SER ALA PHE ILE ALA THR ASN THR THR ASP PRO GLN SEQRES 50 A 788 ILE ASP PHE ASP SER GLU ALA HIS ASN ALA LEU ALA VAL SEQRES 51 A 788 VAL THR LEU PRO PRO THR LEU LEU GLN ASN LEU SER LEU SEQRES 52 A 788 SER GLN ILE GLU LYS VAL SER ARG ILE ASN PHE MET PHE SEQRES 53 A 788 PHE GLY ARG THR GLY LEU PHE GLN ASP HIS GLN ASN ASN SEQRES 54 A 788 GLY LEU THR LEU ASN SER TYR VAL VAL ALA SER SER VAL SEQRES 55 A 788 GLY ASN PHE THR ILE LYS ASN LEU GLN ASP PRO VAL ARG SEQRES 56 A 788 ILE GLU ILE ALA HIS LEU GLU TYR GLN LYS ASP PRO ASN SEQRES 57 A 788 PRO GLN CYS VAL PHE TRP ASP PHE ASN LEU GLN ASN TYR SEQRES 58 A 788 SER GLY GLY TRP ASN SER ASP GLY CYS LYS VAL GLY SER SEQRES 59 A 788 ASP SER ASN SER ASN ARG THR VAL CYS LEU CYS ASN HIS SEQRES 60 A 788 LEU THR HIS PHE GLY ILE LEU MET ASP VAL SER ARG ALA SEQRES 61 A 788 HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 Q 12 THR HIS PHE GLY ILE LEU MET ASP VAL SER ARG ALA HET CA A 901 1 HET NAG A 902 14 HET NAG A 903 14 HET NAG A 904 14 HET NAG A 905 14 HET NAG A 906 14 HET NAG A 907 14 HET NAG A 908 14 HET NAG A 909 14 HET NAG A 910 14 HET NAG A 911 14 HET NAG A 912 14 HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 CA CA 2+ FORMUL 4 NAG 11(C8 H15 N O6) FORMUL 15 HOH *197(H2 O) HELIX 1 AA1 ALA A 91 ILE A 95 5 5 HELIX 2 AA2 THR A 152 GLN A 156 5 5 HELIX 3 AA3 THR A 236 ILE A 240 5 5 HELIX 4 AA4 SER A 272 ILE A 276 5 5 HELIX 5 AA5 LEU A 317 ALA A 323 1 7 HELIX 6 AA6 ASP A 336 SER A 338 5 3 HELIX 7 AA7 PRO A 343 THR A 347 5 5 HELIX 8 AA8 ASP A 419 ASN A 434 1 16 HELIX 9 AA9 GLU A 478 SER A 487 1 10 HELIX 10 AB1 ASN A 575 SER A 587 1 13 HELIX 11 AB2 SER A 592 ALA A 610 1 19 HELIX 12 AB3 ASN A 613 MET A 628 1 16 HELIX 13 AB4 SER A 631 ILE A 653 1 23 HELIX 14 AB5 SER A 721 GLU A 726 1 6 HELIX 15 AB6 ASN A 796 SER A 801 1 6 SHEET 1 AA1 5 VAL A 44 LEU A 45 0 SHEET 2 AA1 5 SER A 66 GLN A 72 1 O THR A 70 N LEU A 45 SHEET 3 AA1 5 VAL A 126 ASN A 132 -1 O MET A 127 N ILE A 71 SHEET 4 AA1 5 ARG A 98 LYS A 102 -1 N LYS A 102 O GLU A 128 SHEET 5 AA1 5 ASP A 107 PHE A 110 -1 O PHE A 110 N VAL A 99 SHEET 1 AA2 4 GLN A 49 THR A 53 0 SHEET 2 AA2 4 GLY A 141 ALA A 150 -1 O ILE A 144 N PHE A 52 SHEET 3 AA2 4 PHE A 77 GLU A 87 -1 N ILE A 78 O VAL A 149 SHEET 4 AA2 4 THR A 119 ASN A 121 -1 O LEU A 120 N ILE A 81 SHEET 1 AA3 6 VAL A 158 THR A 159 0 SHEET 2 AA3 6 GLY A 304 TRP A 312 -1 O ILE A 306 N VAL A 158 SHEET 3 AA3 6 ALA A 181 ARG A 190 -1 N GLU A 187 O TYR A 307 SHEET 4 AA3 6 LYS A 245 THR A 252 -1 O LEU A 249 N VAL A 184 SHEET 5 AA3 6 LEU A 257 PHE A 262 -1 O GLY A 259 N THR A 250 SHEET 6 AA3 6 HIS A 265 ILE A 270 -1 O SER A 269 N ILE A 258 SHEET 1 AA4 2 ARG A 169 VAL A 170 0 SHEET 2 AA4 2 TRP A 340 THR A 341 -1 O THR A 341 N ARG A 169 SHEET 1 AA5 5 SER A 227 SER A 230 0 SHEET 2 AA5 5 GLY A 219 ILE A 224 -1 N LEU A 222 O CYS A 229 SHEET 3 AA5 5 SER A 209 THR A 216 -1 N ALA A 212 O PHE A 223 SHEET 4 AA5 5 GLU A 197 SER A 203 -1 N LEU A 202 O LEU A 211 SHEET 5 AA5 5 LEU A 284 ILE A 287 -1 O LEU A 284 N SER A 203 SHEET 1 AA6 5 VAL A 439 VAL A 451 0 SHEET 2 AA6 5 THR A 458 LYS A 469 -1 O ILE A 461 N GLN A 447 SHEET 3 AA6 5 ASP A 401 ASP A 412 -1 N ILE A 402 O TYR A 468 SHEET 4 AA6 5 LEU A 495 LEU A 504 -1 O ASP A 498 N VAL A 409 SHEET 5 AA6 5 ALA A 490 GLY A 492 -1 N GLY A 492 O LEU A 495 SHEET 1 AA7 2 ASP A 511 GLU A 512 0 SHEET 2 AA7 2 ARG A 518 TRP A 519 -1 O TRP A 519 N ASP A 511 SHEET 1 AA8 3 THR A 527 PRO A 531 0 SHEET 2 AA8 3 ASN A 539 ASN A 547 -1 O ARG A 542 N GLN A 528 SHEET 3 AA8 3 THR A 552 TRP A 555 -1 O THR A 552 N ASN A 547 SHEET 1 AA9 6 SER A 659 ILE A 662 0 SHEET 2 AA9 6 LEU A 667 ALA A 673 -1 O VAL A 669 N ILE A 662 SHEET 3 AA9 6 ARG A 730 PHE A 736 -1 O ILE A 731 N SER A 672 SHEET 4 AA9 6 VAL A 756 SER A 760 -1 O VAL A 756 N PHE A 736 SHEET 5 AA9 6 HIS Q 829 MET Q 834 -1 O PHE Q 830 N VAL A 757 SHEET 6 AA9 6 THR A 751 LEU A 752 -1 N THR A 751 O MET Q 834 SHEET 1 AB1 7 SER A 659 ILE A 662 0 SHEET 2 AB1 7 LEU A 667 ALA A 673 -1 O VAL A 669 N ILE A 662 SHEET 3 AB1 7 ARG A 730 PHE A 736 -1 O ILE A 731 N SER A 672 SHEET 4 AB1 7 VAL A 756 SER A 760 -1 O VAL A 756 N PHE A 736 SHEET 5 AB1 7 HIS Q 829 MET Q 834 -1 O PHE Q 830 N VAL A 757 SHEET 6 AB1 7 GLN A 789 ASP A 794 -1 N TRP A 793 O HIS Q 829 SHEET 7 AB1 7 GLY A 803 ASN A 805 -1 O GLY A 803 N ASP A 794 SHEET 1 AB2 6 GLN A 696 ASP A 698 0 SHEET 2 AB2 6 SER A 682 PHE A 687 -1 N PHE A 687 O GLN A 696 SHEET 3 AB2 6 ALA A 708 LEU A 712 -1 O VAL A 710 N LEU A 684 SHEET 4 AB2 6 VAL A 773 ALA A 778 -1 O GLU A 776 N VAL A 709 SHEET 5 AB2 6 ARG A 819 CYS A 824 -1 O CYS A 822 N ILE A 775 SHEET 6 AB2 6 CYS A 809 VAL A 811 -1 N LYS A 810 O LEU A 823 SSBOND 1 CYS A 41 CYS A 67 1555 1555 2.14 SSBOND 2 CYS A 94 CYS A 111 1555 1555 2.06 SSBOND 3 CYS A 229 CYS A 271 1555 1555 2.07 SSBOND 4 CYS A 369 CYS A 375 1555 1555 2.03 SSBOND 5 CYS A 508 CYS A 544 1555 1555 2.03 SSBOND 6 CYS A 532 CYS A 563 1555 1555 2.08 SSBOND 7 CYS A 790 CYS A 822 1555 1555 2.07 SSBOND 8 CYS A 809 CYS A 824 1555 1555 2.06 LINK ND2 ASN A 68 C1 NAG A 903 1555 1555 1.46 LINK ND2 ASN A 121 C1 NAG A 906 1555 1555 1.46 LINK ND2 ASN A 429 C1 NAG A 908 1555 1555 1.45 LINK ND2 ASN A 539 C1 NAG A 912 1555 1555 1.45 LINK ND2 ASN A 550 C1 NAG A 907 1555 1555 1.45 LINK ND2 ASN A 562 C1 NAG A 909 1555 1555 1.45 LINK ND2 ASN A 565 C1 NAG A 904 1555 1555 1.46 LINK ND2 ASN A 613 C1 NAG A 905 1555 1555 1.46 LINK ND2 ASN A 719 C1 NAG A 902 1555 1555 1.44 LINK ND2 ASN A 763 C1 NAG A 910 1555 1555 1.46 LINK ND2 ASN A 818 C1 NAG A 911 1555 1555 1.45 LINK OE1 GLU A 89 CA CA A 901 1555 1555 2.45 LINK OD1 ASP A 97 CA CA A 901 1555 1555 2.51 LINK OD2 ASP A 97 CA CA A 901 1555 1555 2.74 LINK OD2 ASP A 134 CA CA A 901 1555 1555 2.50 LINK O SER A 136 CA CA A 901 1555 1555 2.46 LINK O VAL A 137 CA CA A 901 1555 1555 2.51 LINK CA CA A 901 O HOH A1038 1555 1555 2.56 CISPEP 1 TYR A 57 PRO A 58 0 6.64 CISPEP 2 PHE A 513 PRO A 514 0 -11.41 CISPEP 3 PHE A 533 PRO A 534 0 -3.32 CRYST1 144.960 59.448 168.385 90.00 107.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006898 0.000000 0.002218 0.00000 SCALE2 0.000000 0.016821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006238 0.00000