HEADER PLANT PROTEIN 08-DEC-19 6V7G TITLE BINDING OF BENZOIC ACID AND ANIONS WITHIN THE CUPIN DOMAINS OF THE TITLE 2 VICILLIN PROTEIN CANAVALIN FROM JACK BEAN (CANAVALIA ENSIFORMIS): TITLE 3 CRYSTAL STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CANAVALIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823 KEYWDS PLANT PROTEINS, LIGANDS, SALICYLIC ACID, ENZYMES, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MCPHERSON REVDAT 4 15-NOV-23 6V7G 1 REMARK REVDAT 3 11-OCT-23 6V7G 1 REMARK REVDAT 2 18-MAR-20 6V7G 1 JRNL REVDAT 1 19-FEB-20 6V7G 0 SPRSDE 19-FEB-20 6V7G 6CB4 JRNL AUTH A.MCPHERSON JRNL TITL BINDING OF BENZOIC ACID AND ANIONS WITHIN THE CUPIN DOMAINS JRNL TITL 2 OF THE VICILIN PROTEIN CANAVALIN FROM JACK BEAN (CANAVALIA JRNL TITL 3 ENSIFORMIS): CRYSTAL STRUCTURES. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 524 268 2020 JRNL REFN ESSN 1090-2104 JRNL PMID 31983433 JRNL DOI 10.1016/J.BBRC.2020.01.101 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 109.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 84484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6222 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 303 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2873 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.66000 REMARK 3 B22 (A**2) : -0.66000 REMARK 3 B33 (A**2) : 2.16000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3088 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2828 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4213 ; 1.579 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6616 ; 1.427 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 6.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;33.200 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;13.794 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;23.813 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3507 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 627 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2274 151.6390 1.1447 REMARK 3 T TENSOR REMARK 3 T11: 0.0217 T22: 0.0366 REMARK 3 T33: 0.0355 T12: -0.0224 REMARK 3 T13: -0.0115 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.2276 L22: 0.8327 REMARK 3 L33: 0.0037 L12: 0.1173 REMARK 3 L13: -0.0075 L23: 0.0170 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: 0.0086 S13: -0.0060 REMARK 3 S21: 0.0231 S22: 0.0002 S23: -0.0787 REMARK 3 S31: -0.0046 S32: 0.0094 S33: -0.0088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6V7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 5.8 - 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86853 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 109.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 61.00 REMARK 200 R MERGE (I) : 0.25800 REMARK 200 R SYM (I) : 0.24800 REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6CB4 REMARK 200 REMARK 200 REMARK: SHORT HEXAGONAL PRISMS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION IN SITTING DROP REMARK 280 CRYSCHEM PLATES. RESERVOIRS WERE 1.0 M SODIUM CITRATE TITRATED REMARK 280 WITH ACETIC ACID TO PH6.0. DROPS WERE INITIALLY EQUAL AMOUNTS OF REMARK 280 THE RESERVOIR SOLUTION WITH A PROTEIN STOCK SOLUTION OF 30 MG/ML REMARK 280 CANAVALIN IN WATER WITH A TRACE OF AMMONIUM HYDROXIDE. AT ROOM REMARK 280 TEMPERATURE CRYSTALLIZATION TIME WAS ABOUT THREE WEEKS., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.93750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.93750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.93750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 125.80600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 217.90238 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -125.80600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 217.90238 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 6 REMARK 465 PHE A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 TRP A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 VAL A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 PHE A 25 REMARK 465 ALA A 26 REMARK 465 HIS A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 HIS A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 GLY A 33 REMARK 465 GLU A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 36 REMARK 465 ASP A 37 REMARK 465 GLU A 38 REMARK 465 SER A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 SER A 42 REMARK 465 ARG A 43 REMARK 465 ALA A 44 REMARK 465 GLN A 45 REMARK 465 GLN A 226 REMARK 465 ILE A 227 REMARK 465 GLN A 228 REMARK 465 GLU A 229 REMARK 465 ILE A 230 REMARK 465 SER A 231 REMARK 465 LYS A 232 REMARK 465 HIS A 233 REMARK 465 ALA A 234 REMARK 465 GLN A 235 REMARK 465 SER A 236 REMARK 465 SER A 237 REMARK 465 SER A 238 REMARK 465 ARG A 239 REMARK 465 LYS A 240 REMARK 465 GLN A 324 REMARK 465 GLN A 325 REMARK 465 GLN A 326 REMARK 465 GLY A 327 REMARK 465 LEU A 328 REMARK 465 GLU A 329 REMARK 465 SER A 330 REMARK 465 HIS A 425 REMARK 465 ILE A 426 REMARK 465 ASP A 427 REMARK 465 ALA A 428 REMARK 465 GLY A 429 REMARK 465 GLY A 430 REMARK 465 LYS A 431 REMARK 465 ALA A 432 REMARK 465 ARG A 433 REMARK 465 ARG A 434 REMARK 465 ALA A 435 REMARK 465 HIS A 436 REMARK 465 LEU A 437 REMARK 465 PRO A 438 REMARK 465 ASN A 439 REMARK 465 LEU A 440 REMARK 465 PHE A 441 REMARK 465 ARG A 442 REMARK 465 THR A 443 REMARK 465 PHE A 444 REMARK 465 TYR A 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 90 O HOH A 601 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 154 -32.04 -135.03 REMARK 500 PHE A 166 -26.06 -144.87 REMARK 500 ARG A 301 -36.41 -131.18 REMARK 500 SER A 351 -8.18 73.65 REMARK 500 SER A 351 -18.22 81.65 REMARK 500 TYR A 417 -62.88 75.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 503 DBREF 6V7G A 1 445 UNP P50477 CANA_CANEN 1 445 SEQRES 1 A 445 MET ALA PHE SER ALA ARG PHE PRO LEU TRP LEU LEU LEU SEQRES 2 A 445 GLY VAL VAL LEU LEU ALA SER VAL SER ALA SER PHE ALA SEQRES 3 A 445 HIS SER GLY HIS SER GLY GLY GLU ALA GLU ASP GLU SER SEQRES 4 A 445 GLU GLU SER ARG ALA GLN ASN ASN PRO TYR LEU PHE ARG SEQRES 5 A 445 SER ASN LYS PHE LEU THR LEU PHE LYS ASN GLN HIS GLY SEQRES 6 A 445 SER LEU ARG LEU LEU GLN ARG PHE ASN GLU ASP THR GLU SEQRES 7 A 445 LYS LEU GLU ASN LEU ARG ASP TYR ARG VAL LEU GLU TYR SEQRES 8 A 445 CYS SER LYS PRO ASN THR LEU LEU LEU PRO HIS HIS SER SEQRES 9 A 445 ASP SER ASP LEU LEU VAL LEU VAL LEU GLU GLY GLN ALA SEQRES 10 A 445 ILE LEU VAL LEU VAL ASN PRO ASP GLY ARG ASP THR TYR SEQRES 11 A 445 LYS LEU ASP GLN GLY ASP ALA ILE LYS ILE GLN ALA GLY SEQRES 12 A 445 THR PRO PHE TYR LEU ILE ASN PRO ASP ASN ASN GLN ASN SEQRES 13 A 445 LEU ARG ILE LEU LYS PHE ALA ILE THR PHE ARG ARG PRO SEQRES 14 A 445 GLY THR VAL GLU ASP PHE PHE LEU SER SER THR LYS ARG SEQRES 15 A 445 LEU PRO SER TYR LEU SER ALA PHE SER LYS ASN PHE LEU SEQRES 16 A 445 GLU ALA SER TYR ASP SER PRO TYR ASP GLU ILE GLU GLN SEQRES 17 A 445 THR LEU LEU GLN GLU GLU GLN GLU GLY VAL ILE VAL LYS SEQRES 18 A 445 MET PRO LYS ASP GLN ILE GLN GLU ILE SER LYS HIS ALA SEQRES 19 A 445 GLN SER SER SER ARG LYS THR LEU SER SER GLN ASP LYS SEQRES 20 A 445 PRO PHE ASN LEU ARG SER ARG ASP PRO ILE TYR SER ASN SEQRES 21 A 445 ASN TYR GLY LYS LEU TYR GLU ILE THR PRO GLU LYS ASN SEQRES 22 A 445 SER GLN LEU ARG ASP LEU ASP ILE LEU LEU ASN OCS LEU SEQRES 23 A 445 GLN MET ASN GLU GLY ALA LEU PHE VAL PRO HIS TYR ASN SEQRES 24 A 445 SER ARG ALA THR VAL ILE LEU VAL ALA ASN GLU GLY ARG SEQRES 25 A 445 ALA GLU VAL GLU LEU VAL GLY LEU GLU GLN GLN GLN GLN SEQRES 26 A 445 GLN GLY LEU GLU SER MET GLN LEU ARG ARG TYR ALA ALA SEQRES 27 A 445 THR LEU SER GLU GLY ASP ILE ILE VAL ILE PRO SER SER SEQRES 28 A 445 PHE PRO VAL ALA LEU LYS ALA ALA SER ASP LEU ASN MET SEQRES 29 A 445 VAL GLY ILE GLY VAL ASN ALA GLU ASN ASN GLU ARG ASN SEQRES 30 A 445 PHE LEU ALA GLY HIS LYS GLU ASN VAL ILE ARG GLN ILE SEQRES 31 A 445 PRO ARG GLN VAL SER ASP LEU THR PHE PRO GLY SER GLY SEQRES 32 A 445 GLU GLU VAL GLU GLU LEU LEU GLU ASN GLN LYS GLU SER SEQRES 33 A 445 TYR PHE VAL ASP GLY GLN PRO ARG HIS ILE ASP ALA GLY SEQRES 34 A 445 GLY LYS ALA ARG ARG ALA HIS LEU PRO ASN LEU PHE ARG SEQRES 35 A 445 THR PHE TYR MODRES 6V7G OCS A 285 CYS MODIFIED RESIDUE HET OCS A 285 14 HET ACT A 501 7 HET BEZ A 502 14 HET CIT A 503 18 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ACT ACETATE ION HETNAM BEZ BENZOIC ACID HETNAM CIT CITRIC ACID FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 BEZ C7 H6 O2 FORMUL 4 CIT C6 H8 O7 FORMUL 5 HOH *273(H2 O) HELIX 1 AA1 ARG A 52 ASN A 54 5 3 HELIX 2 AA2 LEU A 80 ARG A 84 5 5 HELIX 3 AA3 SER A 185 PHE A 190 5 6 HELIX 4 AA4 SER A 191 ASP A 200 1 10 HELIX 5 AA5 PRO A 202 LEU A 211 1 10 HELIX 6 AA6 THR A 269 LYS A 272 5 4 HELIX 7 AA7 ASN A 273 ASP A 280 1 8 HELIX 8 AA8 ASN A 385 ILE A 390 5 6 HELIX 9 AA9 PRO A 391 PHE A 399 1 9 HELIX 10 AB1 SER A 402 ASN A 412 1 11 SHEET 1 AA1 7 LEU A 50 PHE A 51 0 SHEET 2 AA1 7 ILE A 345 ILE A 348 -1 O ILE A 345 N PHE A 51 SHEET 3 AA1 7 THR A 303 GLU A 310 -1 N VAL A 304 O ILE A 348 SHEET 4 AA1 7 LEU A 362 VAL A 369 -1 O VAL A 365 N VAL A 307 SHEET 5 AA1 7 ILE A 281 MET A 288 -1 N LEU A 282 O GLY A 368 SHEET 6 AA1 7 GLY A 263 ILE A 268 -1 N ILE A 268 O LEU A 283 SHEET 7 AA1 7 TYR A 258 SER A 259 -1 N TYR A 258 O LEU A 265 SHEET 1 AA2 7 PHE A 56 ASN A 62 0 SHEET 2 AA2 7 GLY A 65 LEU A 70 -1 O LEU A 69 N LEU A 57 SHEET 3 AA2 7 TYR A 86 SER A 93 -1 O VAL A 88 N LEU A 70 SHEET 4 AA2 7 LEU A 157 ILE A 164 -1 O LYS A 161 N LEU A 89 SHEET 5 AA2 7 ASP A 107 GLU A 114 -1 N LEU A 109 O PHE A 162 SHEET 6 AA2 7 ASP A 136 ILE A 140 -1 O ILE A 140 N LEU A 108 SHEET 7 AA2 7 PHE A 249 ASN A 250 -1 O PHE A 249 N ALA A 137 SHEET 1 AA3 5 GLY A 126 LEU A 132 0 SHEET 2 AA3 5 ALA A 117 ASN A 123 -1 N ALA A 117 O LEU A 132 SHEET 3 AA3 5 PHE A 146 ASN A 150 -1 O ILE A 149 N ILE A 118 SHEET 4 AA3 5 THR A 97 SER A 104 -1 N LEU A 99 O LEU A 148 SHEET 5 AA3 5 ASP A 174 PHE A 176 -1 O PHE A 175 N HIS A 103 SHEET 1 AA4 5 GLY A 126 LEU A 132 0 SHEET 2 AA4 5 ALA A 117 ASN A 123 -1 N ALA A 117 O LEU A 132 SHEET 3 AA4 5 PHE A 146 ASN A 150 -1 O ILE A 149 N ILE A 118 SHEET 4 AA4 5 THR A 97 SER A 104 -1 N LEU A 99 O LEU A 148 SHEET 5 AA4 5 ILE A 219 LYS A 221 -1 O VAL A 220 N LEU A 98 SHEET 1 AA5 5 LEU A 333 LEU A 340 0 SHEET 2 AA5 5 ALA A 313 LEU A 320 -1 N LEU A 317 O TYR A 336 SHEET 3 AA5 5 VAL A 354 ALA A 358 -1 O LYS A 357 N GLU A 314 SHEET 4 AA5 5 ALA A 292 ASN A 299 -1 N PHE A 294 O LEU A 356 SHEET 5 AA5 5 ARG A 376 PHE A 378 -1 O ASN A 377 N TYR A 298 SHEET 1 AA6 5 LEU A 333 LEU A 340 0 SHEET 2 AA6 5 ALA A 313 LEU A 320 -1 N LEU A 317 O TYR A 336 SHEET 3 AA6 5 VAL A 354 ALA A 358 -1 O LYS A 357 N GLU A 314 SHEET 4 AA6 5 ALA A 292 ASN A 299 -1 N PHE A 294 O LEU A 356 SHEET 5 AA6 5 PHE A 418 ASP A 420 -1 O VAL A 419 N LEU A 293 LINK C ASN A 284 N OCS A 285 1555 1555 1.35 LINK C OCS A 285 N LEU A 286 1555 1555 1.33 SITE 1 AC1 5 ASN A 260 ASN A 261 GLY A 263 LYS A 264 SITE 2 AC1 5 ASN A 289 SITE 1 AC2 5 ASN A 284 HIS A 297 ASN A 299 LEU A 306 SITE 2 AC2 5 ARG A 376 SITE 1 AC3 10 LEU A 59 LEU A 67 LEU A 89 LEU A 99 SITE 2 AC3 10 HIS A 102 PHE A 146 LYS A 161 VAL A 172 SITE 3 AC3 10 ASP A 174 HOH A 784 CRYST1 125.806 125.806 49.875 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007949 0.004589 0.000000 0.00000 SCALE2 0.000000 0.009178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020050 0.00000