HEADER DE NOVO PROTEIN 10-DEC-19 6V8E TITLE COMPUTATIONALLY DESIGNED C3-SYMMETRIC HOMOTRIMER FROM TPR REPEAT TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DESIGNED TRIMERS, DESIGNED NANOPARTICLES, RIBOSOME-BINDING SITE, DE KEYWDS 2 NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.SANKARAN,G.UEDA,P.H.ZWART,D.BAKER REVDAT 4 03-APR-24 6V8E 1 REMARK REVDAT 3 06-MAR-24 6V8E 1 REMARK REVDAT 2 19-AUG-20 6V8E 1 TITLE JRNL REVDAT 1 12-AUG-20 6V8E 0 JRNL AUTH G.UEDA,A.ANTANASIJEVIC,J.A.FALLAS,W.SHEFFLER,J.COPPS, JRNL AUTH 2 D.ELLIS,G.B.HUTCHINSON,A.MOYER,A.YASMEEN,Y.TSYBOVSKY, JRNL AUTH 3 Y.J.PARK,M.J.BICK,B.SANKARAN,R.A.GILLESPIE,P.J.BROUWER, JRNL AUTH 4 P.H.ZWART,D.VEESLER,M.KANEKIYO,B.S.GRAHAM,R.W.SANDERS, JRNL AUTH 5 J.P.MOORE,P.J.KLASSE,A.B.WARD,N.P.KING,D.BAKER JRNL TITL TAILORED DESIGN OF PROTEIN NANOPARTICLE SCAFFOLDS FOR JRNL TITL 2 MULTIVALENT PRESENTATION OF VIRAL GLYCOPROTEIN ANTIGENS. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 32748788 JRNL DOI 10.7554/ELIFE.57659 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5848 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.79000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.641 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.279 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.749 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5987 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5144 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8110 ; 1.468 ; 1.894 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11984 ; 1.225 ; 2.933 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 706 ; 5.105 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 372 ;35.724 ;25.806 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 978 ;18.139 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6925 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1239 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2836 ; 4.407 ; 2.392 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2834 ; 4.407 ; 2.391 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3535 ; 5.998 ; 3.580 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3535 ; 5.997 ; 3.580 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3151 ; 6.955 ; 2.958 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3152 ; 6.954 ; 2.958 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4575 ; 9.618 ; 4.225 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7170 ;10.894 ;28.983 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7157 ;10.896 ;28.928 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3580 2.6580 5.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.0276 REMARK 3 T33: 0.0794 T12: -0.0081 REMARK 3 T13: -0.1126 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 3.1744 L22: 3.2054 REMARK 3 L33: 4.2959 L12: -0.3177 REMARK 3 L13: -1.1702 L23: -0.6563 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.2740 S13: 0.0458 REMARK 3 S21: -0.2581 S22: -0.0520 S23: -0.2377 REMARK 3 S31: 0.1539 S32: 0.0127 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0290 11.5270 35.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.1793 REMARK 3 T33: 0.1502 T12: -0.0003 REMARK 3 T13: -0.0647 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.1300 L22: 3.7581 REMARK 3 L33: 5.8867 L12: 1.0105 REMARK 3 L13: 0.9803 L23: 0.7698 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0852 S13: -0.3005 REMARK 3 S21: 0.1112 S22: 0.0601 S23: -0.6756 REMARK 3 S31: -0.0298 S32: 0.9625 S33: -0.0601 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 119 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4430 -14.0760 38.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.4175 T22: 0.0456 REMARK 3 T33: 0.0332 T12: 0.0254 REMARK 3 T13: -0.0820 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.0976 L22: 3.2431 REMARK 3 L33: 1.4953 L12: 0.8446 REMARK 3 L13: -0.8787 L23: -1.0821 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0156 S13: 0.0842 REMARK 3 S21: 0.0537 S22: 0.0923 S23: 0.2037 REMARK 3 S31: -0.1637 S32: -0.1375 S33: -0.0819 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 118 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2990 -28.6900 28.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.3649 T22: 0.0884 REMARK 3 T33: 0.1443 T12: 0.0067 REMARK 3 T13: -0.0898 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 4.0213 L22: 5.8281 REMARK 3 L33: 3.3066 L12: -1.1822 REMARK 3 L13: 0.7485 L23: -0.6909 REMARK 3 S TENSOR REMARK 3 S11: -0.1574 S12: -0.1866 S13: 0.3699 REMARK 3 S21: 0.2044 S22: -0.0122 S23: -0.8523 REMARK 3 S31: -0.0833 S32: 0.3960 S33: 0.1695 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 118 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8040 -37.5600 -5.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.3218 T22: 0.0446 REMARK 3 T33: 0.1154 T12: -0.0012 REMARK 3 T13: -0.0724 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.9897 L22: 2.1197 REMARK 3 L33: 4.9866 L12: -0.0403 REMARK 3 L13: -0.5555 L23: 1.0464 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.3153 S13: 0.1671 REMARK 3 S21: -0.2542 S22: 0.0965 S23: -0.2172 REMARK 3 S31: -0.2109 S32: 0.1143 S33: -0.1393 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 119 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6830 -11.8910 11.0360 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.0155 REMARK 3 T33: 0.0650 T12: -0.0061 REMARK 3 T13: -0.1143 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.8279 L22: 3.8698 REMARK 3 L33: 0.5717 L12: -1.2019 REMARK 3 L13: -0.6099 L23: 0.2713 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.0737 S13: -0.1279 REMARK 3 S21: 0.0770 S22: 0.0733 S23: 0.2030 REMARK 3 S31: 0.0549 S32: -0.0530 S33: -0.0356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 6V8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.14270 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.80230 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: DESIGNED MODEL FROM ROSETTA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M LICL 100MM CITRATE 20% W/V PEG 6000 REMARK 280 PH 4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.45500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 118 REMARK 465 GLY B 119 REMARK 465 GLY D 119 REMARK 465 GLY E 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG F 27 OH TYR F 47 1.98 REMARK 500 OD1 ASP B 33 O HOH B 201 2.08 REMARK 500 O HOH A 208 O HOH A 217 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 18 75.23 -100.50 REMARK 500 LYS A 117 -131.22 -61.96 REMARK 500 GLN A 118 -8.15 51.09 REMARK 500 ASN B 103 -149.68 -79.28 REMARK 500 ALA B 105 -49.28 15.61 REMARK 500 GLU C 18 73.33 -100.53 REMARK 500 ALA D 105 -117.19 73.29 REMARK 500 GLU D 106 -64.61 23.04 REMARK 500 LYS D 117 73.03 -64.77 REMARK 500 GLU E 18 73.37 -100.75 REMARK 500 ALA E 105 -58.67 69.31 REMARK 500 GLU F 18 73.20 -100.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 104 ALA B 105 148.65 REMARK 500 ALA D 105 GLU D 106 143.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 6V8E A 1 119 PDB 6V8E 6V8E 1 119 DBREF 6V8E B 1 119 PDB 6V8E 6V8E 1 119 DBREF 6V8E C 1 119 PDB 6V8E 6V8E 1 119 DBREF 6V8E D 1 119 PDB 6V8E 6V8E 1 119 DBREF 6V8E E 1 119 PDB 6V8E 6V8E 1 119 DBREF 6V8E F 1 119 PDB 6V8E 6V8E 1 119 SEQRES 1 A 119 GLU GLU ALA GLU LEU ALA TYR LEU LEU GLY GLU LEU ALA SEQRES 2 A 119 TYR LYS LEU GLY GLU TYR ARG ILE ALA ILE ARG ALA TYR SEQRES 3 A 119 ARG ILE ALA LEU LYS ARG ASP PRO ASN ASN ALA GLU ALA SEQRES 4 A 119 TRP TYR ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP SEQRES 5 A 119 TYR ASP GLU ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU SEQRES 6 A 119 LEU ASP PRO ASN ASN ALA GLU ALA TRP TYR ASN LEU GLY SEQRES 7 A 119 ASN ALA TYR TYR LYS GLN GLY ASP TYR ASP GLU ALA ILE SEQRES 8 A 119 GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN SEQRES 9 A 119 ALA GLU ALA LYS GLN ASN LEU GLY ASN ALA LYS GLN LYS SEQRES 10 A 119 GLN GLY SEQRES 1 B 119 GLU GLU ALA GLU LEU ALA TYR LEU LEU GLY GLU LEU ALA SEQRES 2 B 119 TYR LYS LEU GLY GLU TYR ARG ILE ALA ILE ARG ALA TYR SEQRES 3 B 119 ARG ILE ALA LEU LYS ARG ASP PRO ASN ASN ALA GLU ALA SEQRES 4 B 119 TRP TYR ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP SEQRES 5 B 119 TYR ASP GLU ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU SEQRES 6 B 119 LEU ASP PRO ASN ASN ALA GLU ALA TRP TYR ASN LEU GLY SEQRES 7 B 119 ASN ALA TYR TYR LYS GLN GLY ASP TYR ASP GLU ALA ILE SEQRES 8 B 119 GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN SEQRES 9 B 119 ALA GLU ALA LYS GLN ASN LEU GLY ASN ALA LYS GLN LYS SEQRES 10 B 119 GLN GLY SEQRES 1 C 119 GLU GLU ALA GLU LEU ALA TYR LEU LEU GLY GLU LEU ALA SEQRES 2 C 119 TYR LYS LEU GLY GLU TYR ARG ILE ALA ILE ARG ALA TYR SEQRES 3 C 119 ARG ILE ALA LEU LYS ARG ASP PRO ASN ASN ALA GLU ALA SEQRES 4 C 119 TRP TYR ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP SEQRES 5 C 119 TYR ASP GLU ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU SEQRES 6 C 119 LEU ASP PRO ASN ASN ALA GLU ALA TRP TYR ASN LEU GLY SEQRES 7 C 119 ASN ALA TYR TYR LYS GLN GLY ASP TYR ASP GLU ALA ILE SEQRES 8 C 119 GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN SEQRES 9 C 119 ALA GLU ALA LYS GLN ASN LEU GLY ASN ALA LYS GLN LYS SEQRES 10 C 119 GLN GLY SEQRES 1 D 119 GLU GLU ALA GLU LEU ALA TYR LEU LEU GLY GLU LEU ALA SEQRES 2 D 119 TYR LYS LEU GLY GLU TYR ARG ILE ALA ILE ARG ALA TYR SEQRES 3 D 119 ARG ILE ALA LEU LYS ARG ASP PRO ASN ASN ALA GLU ALA SEQRES 4 D 119 TRP TYR ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP SEQRES 5 D 119 TYR ASP GLU ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU SEQRES 6 D 119 LEU ASP PRO ASN ASN ALA GLU ALA TRP TYR ASN LEU GLY SEQRES 7 D 119 ASN ALA TYR TYR LYS GLN GLY ASP TYR ASP GLU ALA ILE SEQRES 8 D 119 GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN SEQRES 9 D 119 ALA GLU ALA LYS GLN ASN LEU GLY ASN ALA LYS GLN LYS SEQRES 10 D 119 GLN GLY SEQRES 1 E 119 GLU GLU ALA GLU LEU ALA TYR LEU LEU GLY GLU LEU ALA SEQRES 2 E 119 TYR LYS LEU GLY GLU TYR ARG ILE ALA ILE ARG ALA TYR SEQRES 3 E 119 ARG ILE ALA LEU LYS ARG ASP PRO ASN ASN ALA GLU ALA SEQRES 4 E 119 TRP TYR ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP SEQRES 5 E 119 TYR ASP GLU ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU SEQRES 6 E 119 LEU ASP PRO ASN ASN ALA GLU ALA TRP TYR ASN LEU GLY SEQRES 7 E 119 ASN ALA TYR TYR LYS GLN GLY ASP TYR ASP GLU ALA ILE SEQRES 8 E 119 GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN SEQRES 9 E 119 ALA GLU ALA LYS GLN ASN LEU GLY ASN ALA LYS GLN LYS SEQRES 10 E 119 GLN GLY SEQRES 1 F 119 GLU GLU ALA GLU LEU ALA TYR LEU LEU GLY GLU LEU ALA SEQRES 2 F 119 TYR LYS LEU GLY GLU TYR ARG ILE ALA ILE ARG ALA TYR SEQRES 3 F 119 ARG ILE ALA LEU LYS ARG ASP PRO ASN ASN ALA GLU ALA SEQRES 4 F 119 TRP TYR ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY ASP SEQRES 5 F 119 TYR ASP GLU ALA ILE GLU TYR TYR GLN LYS ALA LEU GLU SEQRES 6 F 119 LEU ASP PRO ASN ASN ALA GLU ALA TRP TYR ASN LEU GLY SEQRES 7 F 119 ASN ALA TYR TYR LYS GLN GLY ASP TYR ASP GLU ALA ILE SEQRES 8 F 119 GLU TYR TYR GLN LYS ALA LEU GLU LEU ASP PRO ASN ASN SEQRES 9 F 119 ALA GLU ALA LYS GLN ASN LEU GLY ASN ALA LYS GLN LYS SEQRES 10 F 119 GLN GLY FORMUL 7 HOH *84(H2 O) HELIX 1 AA1 GLU A 1 LEU A 16 1 16 HELIX 2 AA2 GLU A 18 ASP A 33 1 16 HELIX 3 AA3 ASN A 36 GLN A 50 1 15 HELIX 4 AA4 ASP A 52 ASP A 67 1 16 HELIX 5 AA5 ASN A 70 GLN A 84 1 15 HELIX 6 AA6 ASP A 86 ASP A 101 1 16 HELIX 7 AA7 ASN A 104 LYS A 117 1 14 HELIX 8 AA8 GLU B 2 LEU B 16 1 15 HELIX 9 AA9 GLU B 18 ASP B 33 1 16 HELIX 10 AB1 ASN B 36 GLN B 50 1 15 HELIX 11 AB2 ASP B 52 ASP B 67 1 16 HELIX 12 AB3 ASN B 70 GLN B 84 1 15 HELIX 13 AB4 ASP B 86 ASP B 101 1 16 HELIX 14 AB5 ASN B 104 LYS B 117 1 14 HELIX 15 AB6 GLU C 2 LEU C 16 1 15 HELIX 16 AB7 GLU C 18 ASP C 33 1 16 HELIX 17 AB8 ASN C 36 GLN C 50 1 15 HELIX 18 AB9 ASP C 52 ASP C 67 1 16 HELIX 19 AC1 ASN C 70 GLN C 84 1 15 HELIX 20 AC2 ASP C 86 ASP C 101 1 16 HELIX 21 AC3 ASN C 104 GLY C 119 1 16 HELIX 22 AC4 GLU D 2 LEU D 16 1 15 HELIX 23 AC5 GLU D 18 ASP D 33 1 16 HELIX 24 AC6 ASN D 36 GLN D 50 1 15 HELIX 25 AC7 ASP D 52 ASP D 67 1 16 HELIX 26 AC8 ASN D 70 GLN D 84 1 15 HELIX 27 AC9 ASP D 86 ASP D 101 1 16 HELIX 28 AD1 ALA D 105 LYS D 117 1 13 HELIX 29 AD2 GLU E 2 LEU E 16 1 15 HELIX 30 AD3 GLU E 18 ASP E 33 1 16 HELIX 31 AD4 ASN E 36 GLN E 50 1 15 HELIX 32 AD5 ASP E 52 ASP E 67 1 16 HELIX 33 AD6 ASN E 70 GLN E 84 1 15 HELIX 34 AD7 ASP E 86 ASP E 101 1 16 HELIX 35 AD8 ALA E 105 LYS E 117 1 13 HELIX 36 AD9 GLU F 2 LEU F 16 1 15 HELIX 37 AE1 GLU F 18 ASP F 33 1 16 HELIX 38 AE2 ASN F 36 GLN F 50 1 15 HELIX 39 AE3 ASP F 52 ASP F 67 1 16 HELIX 40 AE4 ASN F 70 GLN F 84 1 15 HELIX 41 AE5 ASP F 86 ASP F 101 1 16 HELIX 42 AE6 ASN F 104 GLY F 119 1 16 CRYST1 69.470 64.910 99.030 90.00 106.33 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014395 0.000000 0.004217 0.00000 SCALE2 0.000000 0.015406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010522 0.00000