data_6V9D # _entry.id 6V9D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6V9D pdb_00006v9d 10.2210/pdb6v9d/pdb WWPDB D_1000246035 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-05-20 2 'Structure model' 1 1 2020-07-22 3 'Structure model' 1 2 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6V9D _pdbx_database_status.recvd_initial_deposition_date 2019-12-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Native set' _pdbx_database_related.db_id 6V9B _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Trachman, R.J.' 1 ? ;Ferre-D'Amare, A.R. ; 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 776 _citation.page_last 785.e3 _citation.title 'Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2020.04.007 _citation.pdbx_database_id_PubMed 32386573 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trachman 3rd, R.J.' 1 ? primary 'Cojocaru, R.' 2 ? primary 'Wu, D.' 3 ? primary 'Piszczek, G.' 4 ? primary 'Ryckelynck, M.' 5 ? primary 'Unrau, P.J.' 6 ? primary ;Ferre-D'Amare, A.R. ; 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (28-MER)' 9233.559 2 ? ? ? ? 2 non-polymer syn '2-[(E)-(1-methylquinolin-4(1H)-ylidene)methyl]-3-(2-oxopropyl)-1,3-benzothiazol-3-ium' 347.453 3 ? ? ? ? 3 non-polymer syn 'BROMIDE ION' 79.904 2 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AUCGAGGGAGUGGUGAGGAUGAGGCGAU _entity_poly.pdbx_seq_one_letter_code_can AUCGAGGGAGUGGUGAGGAUGAGGCGAU _entity_poly.pdbx_strand_id B,E _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-[(E)-(1-methylquinolin-4(1H)-ylidene)methyl]-3-(2-oxopropyl)-1,3-benzothiazol-3-ium' QW4 3 'BROMIDE ION' BR 4 'POTASSIUM ION' K # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 U n 1 3 C n 1 4 G n 1 5 A n 1 6 G n 1 7 G n 1 8 G n 1 9 A n 1 10 G n 1 11 U n 1 12 G n 1 13 G n 1 14 U n 1 15 G n 1 16 A n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 G n 1 22 A n 1 23 G n 1 24 G n 1 25 C n 1 26 G n 1 27 A n 1 28 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 28 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BR non-polymer . 'BROMIDE ION' ? 'Br -1' 79.904 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 QW4 non-polymer . '2-[(E)-(1-methylquinolin-4(1H)-ylidene)methyl]-3-(2-oxopropyl)-1,3-benzothiazol-3-ium' ? 'C21 H19 N2 O S 1' 347.453 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A B . n A 1 2 U 2 2 2 U U B . n A 1 3 C 3 3 3 C C B . n A 1 4 G 4 4 4 G G B . n A 1 5 A 5 5 5 A A B . n A 1 6 G 6 6 6 G G B . n A 1 7 G 7 7 7 G G B . n A 1 8 G 8 8 8 G G B . n A 1 9 A 9 9 9 A A B . n A 1 10 G 10 10 10 G G B . n A 1 11 U 11 11 11 U U B . n A 1 12 G 12 12 12 G G B . n A 1 13 G 13 13 13 G G B . n A 1 14 U 14 14 14 U U B . n A 1 15 G 15 15 15 G G B . n A 1 16 A 16 16 16 A A B . n A 1 17 G 17 17 17 G G B . n A 1 18 G 18 18 18 G G B . n A 1 19 A 19 19 19 A A B . n A 1 20 U 20 20 20 U U B . n A 1 21 G 21 21 21 G G B . n A 1 22 A 22 22 22 A A B . n A 1 23 G 23 23 23 G G B . n A 1 24 G 24 24 24 G G B . n A 1 25 C 25 25 25 C C B . n A 1 26 G 26 26 26 G G B . n A 1 27 A 27 27 27 A A B . n A 1 28 U 28 28 28 U U B . n B 1 1 A 1 1 1 A A E . n B 1 2 U 2 2 2 U U E . n B 1 3 C 3 3 3 C C E . n B 1 4 G 4 4 4 G G E . n B 1 5 A 5 5 5 A A E . n B 1 6 G 6 6 6 G G E . n B 1 7 G 7 7 7 G G E . n B 1 8 G 8 8 8 G G E . n B 1 9 A 9 9 9 A A E . n B 1 10 G 10 10 10 G G E . n B 1 11 U 11 11 11 U U E . n B 1 12 G 12 12 12 G G E . n B 1 13 G 13 13 13 G G E . n B 1 14 U 14 14 14 U U E . n B 1 15 G 15 15 15 G G E . n B 1 16 A 16 16 16 A A E . n B 1 17 G 17 17 17 G G E . n B 1 18 G 18 18 18 G G E . n B 1 19 A 19 19 19 A A E . n B 1 20 U 20 20 20 U U E . n B 1 21 G 21 21 21 G G E . n B 1 22 A 22 22 22 A A E . n B 1 23 G 23 23 23 G G E . n B 1 24 G 24 24 24 G G E . n B 1 25 C 25 25 25 C C E . n B 1 26 G 26 26 26 G G E . n B 1 27 A 27 27 27 A A E . n B 1 28 U 28 28 ? ? ? E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QW4 1 101 1 QW4 TO1 B . D 2 QW4 1 102 3 QW4 TO1 B . E 3 BR 1 103 2 BR BR B . F 4 K 1 104 1 K K B . G 4 K 1 105 2 K K B . H 2 QW4 1 101 2 QW4 TO1 E . I 3 BR 1 102 1 BR BR E . J 4 K 1 103 3 K K E . K 4 K 1 104 4 K K E . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6V9D _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.917 _cell.length_a_esd ? _cell.length_b 48.917 _cell.length_b_esd ? _cell.length_c 122.972 _cell.length_c_esd ? _cell.volume 254833.487 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ;P 31 2" ; _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6V9D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl pH 8.5, 0.01 M CoCl2, 1.65-1.75 M NH4SO4, 0.01-0.015 M Phenol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.917 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 53.86 _reflns.entry_id 6V9D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.64 _reflns.d_resolution_low 42.36 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8121 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 16.2 _reflns.pdbx_Rmerge_I_obs 0.093 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.64 _reflns_shell.d_res_low 2.71 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1214 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.06 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.41 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 50.77 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6V9D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.80 _refine.ls_d_res_low 42.36 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8121 _refine.ls_number_reflns_R_free 815 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.90 _refine.ls_percent_reflns_R_free 10.04 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2252 _refine.ls_R_factor_R_free 0.2722 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2196 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.0625 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3897 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 42.36 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1287 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1206 _refine_hist.pdbx_number_atoms_ligand 81 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0068 ? 1440 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.4655 ? 2240 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0791 ? 273 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0079 ? 64 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 25.7129 ? 664 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.80 2.98 . . 137 1214 99.78 . . . 0.3752 . 0.3280 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.98 3.21 . . 124 1239 99.93 . . . 0.3423 . 0.2514 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.21 3.53 . . 147 1203 99.85 . . . 0.2610 . 0.2088 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.53 4.04 . . 149 1215 99.93 . . . 0.2816 . 0.2182 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.04 5.09 . . 127 1203 100.00 . . . 0.2544 . 0.2042 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.09 42.36 . . 131 1232 99.93 . . . 0.2373 . 0.2015 . . . . . . . . . . . # _struct.entry_id 6V9D _struct.title 'Co-crystal structure of the fluorogenic Mango-IV homodimer bound to TO1-Biotin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6V9D _struct_keywords.text 'RNA, aptamer, fluorescence' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 2 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6V9D _struct_ref.pdbx_db_accession 6V9D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6V9D B 1 ? 28 ? 6V9D 1 ? 28 ? 1 28 2 1 6V9D E 1 ? 28 ? 6V9D 1 ? 28 ? 1 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1850 ? 1 MORE 7 ? 1 'SSA (A^2)' 9700 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ;Constant Velocity AUC Size exclusion chromotography ; # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 7 O6 ? ? ? 1_555 G K . K ? ? B G 7 B K 105 1_555 ? ? ? ? ? ? ? 2.509 ? ? metalc2 metalc ? ? A G 8 O6 ? ? ? 1_555 F K . K ? ? B G 8 B K 104 1_555 ? ? ? ? ? ? ? 2.905 ? ? metalc3 metalc ? ? A G 8 O6 ? ? ? 1_555 G K . K ? ? B G 8 B K 105 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc4 metalc ? ? A G 10 O6 ? ? ? 1_555 F K . K ? ? B G 10 B K 104 1_555 ? ? ? ? ? ? ? 2.831 ? ? metalc5 metalc ? ? A G 12 O6 ? ? ? 1_555 G K . K ? ? B G 12 B K 105 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc6 metalc ? ? A G 13 O6 ? ? ? 1_555 F K . K ? ? B G 13 B K 104 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc7 metalc ? ? A G 13 O6 ? ? ? 1_555 G K . K ? ? B G 13 B K 105 1_555 ? ? ? ? ? ? ? 2.758 ? ? metalc8 metalc ? ? A G 15 O6 ? ? ? 1_555 F K . K ? ? B G 15 B K 104 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc9 metalc ? ? A G 17 O6 ? ? ? 1_555 G K . K ? ? B G 17 B K 105 1_555 ? ? ? ? ? ? ? 2.901 ? ? metalc10 metalc ? ? A G 18 O6 ? ? ? 1_555 F K . K ? ? B G 18 B K 104 1_555 ? ? ? ? ? ? ? 2.717 ? ? metalc11 metalc ? ? A G 18 O6 ? ? ? 1_555 G K . K ? ? B G 18 B K 105 1_555 ? ? ? ? ? ? ? 3.046 ? ? metalc12 metalc ? ? A G 21 O6 ? ? ? 1_555 F K . K ? ? B G 21 B K 104 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc13 metalc ? ? A G 23 O6 ? ? ? 1_555 G K . K ? ? B G 23 B K 105 1_555 ? ? ? ? ? ? ? 2.652 ? ? metalc14 metalc ? ? A G 24 O6 ? ? ? 1_555 F K . K ? ? B G 24 B K 104 1_555 ? ? ? ? ? ? ? 2.841 ? ? metalc15 metalc ? ? A G 24 O6 ? ? ? 1_555 G K . K ? ? B G 24 B K 105 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc16 metalc ? ? A G 26 O6 ? ? ? 1_555 F K . K ? ? B G 26 B K 104 1_555 ? ? ? ? ? ? ? 2.616 ? ? metalc17 metalc ? ? B G 7 O6 ? ? ? 1_555 J K . K ? ? E G 7 E K 103 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc18 metalc ? ? B G 8 O6 ? ? ? 1_555 J K . K ? ? E G 8 E K 103 1_555 ? ? ? ? ? ? ? 3.098 ? ? metalc19 metalc ? ? B G 8 O6 ? ? ? 1_555 K K . K ? ? E G 8 E K 104 1_555 ? ? ? ? ? ? ? 2.761 ? ? metalc20 metalc ? ? B G 10 O6 ? ? ? 1_555 K K . K ? ? E G 10 E K 104 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc21 metalc ? ? B G 12 O6 ? ? ? 1_555 J K . K ? ? E G 12 E K 103 1_555 ? ? ? ? ? ? ? 2.631 ? ? metalc22 metalc ? ? B G 13 O6 ? ? ? 1_555 J K . K ? ? E G 13 E K 103 1_555 ? ? ? ? ? ? ? 2.954 ? ? metalc23 metalc ? ? B G 13 O6 ? ? ? 1_555 K K . K ? ? E G 13 E K 104 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc24 metalc ? ? B G 15 O6 ? ? ? 1_555 K K . K ? ? E G 15 E K 104 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc25 metalc ? ? B G 17 O6 ? ? ? 1_555 J K . K ? ? E G 17 E K 103 1_555 ? ? ? ? ? ? ? 2.971 ? ? metalc26 metalc ? ? B G 18 O6 ? ? ? 1_555 J K . K ? ? E G 18 E K 103 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc27 metalc ? ? B G 18 O6 ? ? ? 1_555 K K . K ? ? E G 18 E K 104 1_555 ? ? ? ? ? ? ? 2.849 ? ? metalc28 metalc ? ? B G 21 O6 ? ? ? 1_555 K K . K ? ? E G 21 E K 104 1_555 ? ? ? ? ? ? ? 2.756 ? ? metalc29 metalc ? ? B G 23 O6 ? ? ? 1_555 J K . K ? ? E G 23 E K 103 1_555 ? ? ? ? ? ? ? 2.621 ? ? metalc30 metalc ? ? B G 24 O6 ? ? ? 1_555 J K . K ? ? E G 24 E K 103 1_555 ? ? ? ? ? ? ? 2.864 ? ? metalc31 metalc ? ? B G 24 O6 ? ? ? 1_555 K K . K ? ? E G 24 E K 104 1_555 ? ? ? ? ? ? ? 2.869 ? ? metalc32 metalc ? ? B G 26 O6 ? ? ? 1_555 K K . K ? ? E G 26 E K 104 1_555 ? ? ? ? ? ? ? 2.667 ? ? hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 B G 6 N1 ? ? B A 1 E G 6 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 B G 6 O6 ? ? B A 1 E G 6 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 5 N1 ? ? B U 2 E A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 5 N6 ? ? B U 2 E A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 4 N1 ? ? B C 3 E G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 4 O6 ? ? B C 3 E G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 4 N2 ? ? B C 3 E G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 3 N3 ? ? B G 4 E C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 3 O2 ? ? B G 4 E C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 3 N4 ? ? B G 4 E C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 2 N3 ? ? B A 5 E U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 2 O4 ? ? B A 5 E U 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 B A 1 N1 ? ? B G 6 E A 1 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 B A 1 N6 ? ? B G 6 E A 1 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A G 12 O6 ? ? B G 7 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A G 12 N7 ? ? B G 7 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A G 7 N7 ? ? ? 1_555 A G 23 N2 ? ? B G 7 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A G 23 N1 ? ? B G 7 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A G 13 O6 ? ? B G 8 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A G 13 N7 ? ? B G 8 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A G 8 N7 ? ? ? 1_555 A G 24 N2 ? ? B G 8 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A G 24 N1 ? ? B G 8 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 15 N2 ? ? B G 10 B G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 15 N1 ? ? B G 10 B G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 26 O6 ? ? B G 10 B G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 26 N7 ? ? B G 10 B G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 A G 17 O6 ? ? B G 12 B G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 17 N7 ? ? B G 12 B G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 18 O6 ? ? B G 13 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A G 13 N2 ? ? ? 1_555 A G 18 N7 ? ? B G 13 B G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A G 15 N7 ? ? ? 1_555 A G 21 N2 ? ? B G 15 B G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A G 21 N1 ? ? B G 15 B G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A G 17 N1 ? ? ? 1_555 A G 23 O6 ? ? B G 17 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A G 17 N2 ? ? ? 1_555 A G 23 N7 ? ? B G 17 B G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A G 18 N1 ? ? ? 1_555 A G 24 O6 ? ? B G 18 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A G 18 N2 ? ? ? 1_555 A G 24 N7 ? ? B G 18 B G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A G 21 N7 ? ? ? 1_555 A G 26 N2 ? ? B G 21 B G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 21 O6 ? ? ? 1_555 A G 26 N1 ? ? B G 21 B G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A G 23 N7 ? ? ? 1_555 B A 1 N6 ? ? B G 23 E A 1 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog40 hydrog ? ? B G 7 N1 ? ? ? 1_555 B G 12 O6 ? ? E G 7 E G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? B G 7 N2 ? ? ? 1_555 B G 12 N7 ? ? E G 7 E G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? B G 7 N7 ? ? ? 1_555 B G 23 N2 ? ? E G 7 E G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? B G 7 O6 ? ? ? 1_555 B G 23 N1 ? ? E G 7 E G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? B G 8 N1 ? ? ? 1_555 B G 13 O6 ? ? E G 8 E G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog45 hydrog ? ? B G 8 N2 ? ? ? 1_555 B G 13 N7 ? ? E G 8 E G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog46 hydrog ? ? B G 8 N7 ? ? ? 1_555 B G 24 N2 ? ? E G 8 E G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog47 hydrog ? ? B G 8 O6 ? ? ? 1_555 B G 24 N1 ? ? E G 8 E G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog48 hydrog ? ? B G 10 N7 ? ? ? 1_555 B G 15 N2 ? ? E G 10 E G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog49 hydrog ? ? B G 10 O6 ? ? ? 1_555 B G 15 N1 ? ? E G 10 E G 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog50 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 26 O6 ? ? E G 10 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog51 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 26 N7 ? ? E G 10 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog52 hydrog ? ? B G 12 N1 ? ? ? 1_555 B G 17 O6 ? ? E G 12 E G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog53 hydrog ? ? B G 12 N2 ? ? ? 1_555 B G 17 N7 ? ? E G 12 E G 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog54 hydrog ? ? B G 13 N1 ? ? ? 1_555 B G 18 O6 ? ? E G 13 E G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog55 hydrog ? ? B G 13 N2 ? ? ? 1_555 B G 18 N7 ? ? E G 13 E G 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog56 hydrog ? ? B G 15 N7 ? ? ? 1_555 B G 21 N2 ? ? E G 15 E G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog57 hydrog ? ? B G 15 O6 ? ? ? 1_555 B G 21 N1 ? ? E G 15 E G 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog58 hydrog ? ? B G 17 N1 ? ? ? 1_555 B G 23 O6 ? ? E G 17 E G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog59 hydrog ? ? B G 17 N2 ? ? ? 1_555 B G 23 N7 ? ? E G 17 E G 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog60 hydrog ? ? B G 18 N1 ? ? ? 1_555 B G 24 O6 ? ? E G 18 E G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog61 hydrog ? ? B G 18 N2 ? ? ? 1_555 B G 24 N7 ? ? E G 18 E G 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog62 hydrog ? ? B G 21 N7 ? ? ? 1_555 B G 26 N2 ? ? E G 21 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog63 hydrog ? ? B G 21 O6 ? ? ? 1_555 B G 26 N1 ? ? E G 21 E G 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 7 ? B G 7 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 8 ? B G 8 ? 1_555 72.7 ? 2 O6 ? A G 7 ? B G 7 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 85.7 ? 3 O6 ? A G 8 ? B G 8 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 79.0 ? 4 O6 ? A G 7 ? B G 7 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 134.4 ? 5 O6 ? A G 8 ? B G 8 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 66.3 ? 6 O6 ? A G 12 ? B G 12 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 68.0 ? 7 O6 ? A G 7 ? B G 7 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 132.7 ? 8 O6 ? A G 8 ? B G 8 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 140.6 ? 9 O6 ? A G 12 ? B G 12 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 74.8 ? 10 O6 ? A G 13 ? B G 13 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 17 ? B G 17 ? 1_555 76.8 ? 11 O6 ? A G 7 ? B G 7 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 143.6 ? 12 O6 ? A G 8 ? B G 8 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 99.8 ? 13 O6 ? A G 12 ? B G 12 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 128.8 ? 14 O6 ? A G 13 ? B G 13 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 65.2 ? 15 O6 ? A G 17 ? B G 17 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 75.4 ? 16 O6 ? A G 7 ? B G 7 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 23 ? B G 23 ? 1_555 86.8 ? 17 O6 ? A G 8 ? B G 8 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 23 ? B G 23 ? 1_555 146.0 ? 18 O6 ? A G 12 ? B G 12 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 23 ? B G 23 ? 1_555 127.2 ? 19 O6 ? A G 13 ? B G 13 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 23 ? B G 23 ? 1_555 138.8 ? 20 O6 ? A G 17 ? B G 17 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 23 ? B G 23 ? 1_555 72.8 ? 21 O6 ? A G 18 ? B G 18 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 23 ? B G 23 ? 1_555 80.6 ? 22 O6 ? A G 7 ? B G 7 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 79.9 ? 23 O6 ? A G 8 ? B G 8 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 65.2 ? 24 O6 ? A G 12 ? B G 12 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 143.9 ? 25 O6 ? A G 13 ? B G 13 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 99.6 ? 26 O6 ? A G 17 ? B G 17 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 137.4 ? 27 O6 ? A G 18 ? B G 18 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 65.1 ? 28 O6 ? A G 23 ? B G 23 ? 1_555 K ? G K . ? B K 105 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 85.0 ? 29 O6 ? A G 8 ? B G 8 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 10 ? B G 10 ? 1_555 84.7 ? 30 O6 ? A G 8 ? B G 8 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 65.1 ? 31 O6 ? A G 10 ? B G 10 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 99.4 ? 32 O6 ? A G 8 ? B G 8 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 15 ? B G 15 ? 1_555 152.4 ? 33 O6 ? A G 10 ? B G 10 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 15 ? B G 15 ? 1_555 77.0 ? 34 O6 ? A G 13 ? B G 13 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 15 ? B G 15 ? 1_555 97.5 ? 35 O6 ? A G 8 ? B G 8 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 104.5 ? 36 O6 ? A G 10 ? B G 10 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 161.0 ? 37 O6 ? A G 13 ? B G 13 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 70.8 ? 38 O6 ? A G 15 ? B G 15 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 18 ? B G 18 ? 1_555 88.0 ? 39 O6 ? A G 8 ? B G 8 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 21 ? B G 21 ? 1_555 134.2 ? 40 O6 ? A G 10 ? B G 10 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 21 ? B G 21 ? 1_555 100.2 ? 41 O6 ? A G 13 ? B G 13 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 21 ? B G 21 ? 1_555 153.7 ? 42 O6 ? A G 15 ? B G 15 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 21 ? B G 21 ? 1_555 70.2 ? 43 O6 ? A G 18 ? B G 18 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 21 ? B G 21 ? 1_555 85.3 ? 44 O6 ? A G 8 ? B G 8 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 60.7 ? 45 O6 ? A G 10 ? B G 10 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 131.2 ? 46 O6 ? A G 13 ? B G 13 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 95.9 ? 47 O6 ? A G 15 ? B G 15 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 145.9 ? 48 O6 ? A G 18 ? B G 18 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 67.1 ? 49 O6 ? A G 21 ? B G 21 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 24 ? B G 24 ? 1_555 84.2 ? 50 O6 ? A G 8 ? B G 8 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 26 ? B G 26 ? 1_555 76.9 ? 51 O6 ? A G 10 ? B G 10 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 26 ? B G 26 ? 1_555 58.3 ? 52 O6 ? A G 13 ? B G 13 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 26 ? B G 26 ? 1_555 138.0 ? 53 O6 ? A G 15 ? B G 15 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 26 ? B G 26 ? 1_555 109.4 ? 54 O6 ? A G 18 ? B G 18 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 26 ? B G 26 ? 1_555 139.4 ? 55 O6 ? A G 21 ? B G 21 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 26 ? B G 26 ? 1_555 68.0 ? 56 O6 ? A G 24 ? B G 24 ? 1_555 K ? F K . ? B K 104 ? 1_555 O6 ? A G 26 ? B G 26 ? 1_555 79.8 ? 57 O6 ? B G 7 ? E G 7 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 8 ? E G 8 ? 1_555 77.6 ? 58 O6 ? B G 7 ? E G 7 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 12 ? E G 12 ? 1_555 90.0 ? 59 O6 ? B G 8 ? E G 8 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 12 ? E G 12 ? 1_555 89.2 ? 60 O6 ? B G 7 ? E G 7 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 13 ? E G 13 ? 1_555 137.7 ? 61 O6 ? B G 8 ? E G 8 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 13 ? E G 13 ? 1_555 65.7 ? 62 O6 ? B G 12 ? E G 12 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 13 ? E G 13 ? 1_555 70.0 ? 63 O6 ? B G 7 ? E G 7 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 17 ? E G 17 ? 1_555 135.2 ? 64 O6 ? B G 8 ? E G 8 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 17 ? E G 17 ? 1_555 140.8 ? 65 O6 ? B G 12 ? E G 12 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 17 ? E G 17 ? 1_555 73.0 ? 66 O6 ? B G 13 ? E G 13 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 17 ? E G 17 ? 1_555 75.3 ? 67 O6 ? B G 7 ? E G 7 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 146.4 ? 68 O6 ? B G 8 ? E G 8 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 96.6 ? 69 O6 ? B G 12 ? E G 12 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 123.3 ? 70 O6 ? B G 13 ? E G 13 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 62.0 ? 71 O6 ? B G 17 ? E G 17 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 67.5 ? 72 O6 ? B G 7 ? E G 7 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 23 ? E G 23 ? 1_555 80.5 ? 73 O6 ? B G 8 ? E G 8 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 23 ? E G 23 ? 1_555 138.9 ? 74 O6 ? B G 12 ? E G 12 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 23 ? E G 23 ? 1_555 125.2 ? 75 O6 ? B G 13 ? E G 13 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 23 ? E G 23 ? 1_555 141.6 ? 76 O6 ? B G 17 ? E G 17 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 23 ? E G 23 ? 1_555 76.9 ? 77 O6 ? B G 18 ? E G 18 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 23 ? E G 23 ? 1_555 83.0 ? 78 O6 ? B G 7 ? E G 7 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 88.1 ? 79 O6 ? B G 8 ? E G 8 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 66.1 ? 80 O6 ? B G 12 ? E G 12 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 155.1 ? 81 O6 ? B G 13 ? E G 13 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 95.3 ? 82 O6 ? B G 17 ? E G 17 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 124.0 ? 83 O6 ? B G 18 ? E G 18 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 59.9 ? 84 O6 ? B G 23 ? E G 23 ? 1_555 K ? J K . ? E K 103 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 78.9 ? 85 O6 ? B G 8 ? E G 8 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 10 ? E G 10 ? 1_555 93.0 ? 86 O6 ? B G 8 ? E G 8 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 13 ? E G 13 ? 1_555 74.5 ? 87 O6 ? B G 10 ? E G 10 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 13 ? E G 13 ? 1_555 94.7 ? 88 O6 ? B G 8 ? E G 8 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 15 ? E G 15 ? 1_555 157.1 ? 89 O6 ? B G 10 ? E G 10 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 15 ? E G 15 ? 1_555 67.6 ? 90 O6 ? B G 13 ? E G 13 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 15 ? E G 15 ? 1_555 94.4 ? 91 O6 ? B G 8 ? E G 8 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 105.6 ? 92 O6 ? B G 10 ? E G 10 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 147.6 ? 93 O6 ? B G 13 ? E G 13 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 66.0 ? 94 O6 ? B G 15 ? E G 15 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 18 ? E G 18 ? 1_555 87.3 ? 95 O6 ? B G 8 ? E G 8 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 21 ? E G 21 ? 1_555 129.2 ? 96 O6 ? B G 10 ? E G 10 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 21 ? E G 21 ? 1_555 100.1 ? 97 O6 ? B G 13 ? E G 13 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 21 ? E G 21 ? 1_555 150.7 ? 98 O6 ? B G 15 ? E G 15 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 21 ? E G 21 ? 1_555 68.7 ? 99 O6 ? B G 18 ? E G 18 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 21 ? E G 21 ? 1_555 88.6 ? 100 O6 ? B G 8 ? E G 8 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 70.7 ? 101 O6 ? B G 10 ? E G 10 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 152.2 ? 102 O6 ? B G 13 ? E G 13 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 102.1 ? 103 O6 ? B G 15 ? E G 15 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 131.9 ? 104 O6 ? B G 18 ? E G 18 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 60.3 ? 105 O6 ? B G 21 ? E G 21 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 24 ? E G 24 ? 1_555 75.6 ? 106 O6 ? B G 8 ? E G 8 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 26 ? E G 26 ? 1_555 71.9 ? 107 O6 ? B G 10 ? E G 10 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 26 ? E G 26 ? 1_555 66.7 ? 108 O6 ? B G 13 ? E G 13 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 26 ? E G 26 ? 1_555 140.2 ? 109 O6 ? B G 15 ? E G 15 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 26 ? E G 26 ? 1_555 108.7 ? 110 O6 ? B G 18 ? E G 18 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 26 ? E G 26 ? 1_555 144.2 ? 111 O6 ? B G 21 ? E G 21 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 26 ? E G 26 ? 1_555 69.1 ? 112 O6 ? B G 24 ? E G 24 ? 1_555 K ? K K . ? E K 104 ? 1_555 O6 ? B G 26 ? E G 26 ? 1_555 86.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B QW4 101 ? 7 'binding site for residue QW4 B 101' AC2 Software B QW4 102 ? 6 'binding site for residue QW4 B 102' AC3 Software B BR 103 ? 2 'binding site for residue BR B 103' AC4 Software B K 104 ? 9 'binding site for residue K B 104' AC5 Software B K 105 ? 9 'binding site for residue K B 105' AC6 Software E QW4 101 ? 8 'binding site for residue QW4 E 101' AC7 Software E BR 102 ? 2 'binding site for residue BR E 102' AC8 Software E K 103 ? 9 'binding site for residue K E 103' AC9 Software E K 104 ? 9 'binding site for residue K E 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 A A 9 ? A B 9 . ? 1_555 ? 2 AC1 7 A A 19 ? A B 19 . ? 1_555 ? 3 AC1 7 U A 20 ? U B 20 . ? 1_555 ? 4 AC1 7 U A 20 ? U B 20 . ? 5_554 ? 5 AC1 7 C A 25 ? C B 25 . ? 1_555 ? 6 AC1 7 G A 26 ? G B 26 . ? 1_555 ? 7 AC1 7 QW4 D . ? QW4 B 102 . ? 1_555 ? 8 AC2 6 G A 10 ? G B 10 . ? 1_555 ? 9 AC2 6 A A 19 ? A B 19 . ? 1_555 ? 10 AC2 6 G A 21 ? G B 21 . ? 1_555 ? 11 AC2 6 C A 25 ? C B 25 . ? 1_555 ? 12 AC2 6 G A 26 ? G B 26 . ? 1_555 ? 13 AC2 6 QW4 C . ? QW4 B 101 . ? 1_555 ? 14 AC3 2 A A 1 ? A B 1 . ? 1_555 ? 15 AC3 2 U A 2 ? U B 2 . ? 1_555 ? 16 AC4 9 G A 8 ? G B 8 . ? 1_555 ? 17 AC4 9 G A 10 ? G B 10 . ? 1_555 ? 18 AC4 9 G A 13 ? G B 13 . ? 1_555 ? 19 AC4 9 G A 15 ? G B 15 . ? 1_555 ? 20 AC4 9 G A 18 ? G B 18 . ? 1_555 ? 21 AC4 9 G A 21 ? G B 21 . ? 1_555 ? 22 AC4 9 G A 24 ? G B 24 . ? 1_555 ? 23 AC4 9 G A 26 ? G B 26 . ? 1_555 ? 24 AC4 9 K G . ? K B 105 . ? 1_555 ? 25 AC5 9 G A 7 ? G B 7 . ? 1_555 ? 26 AC5 9 G A 8 ? G B 8 . ? 1_555 ? 27 AC5 9 G A 12 ? G B 12 . ? 1_555 ? 28 AC5 9 G A 13 ? G B 13 . ? 1_555 ? 29 AC5 9 G A 17 ? G B 17 . ? 1_555 ? 30 AC5 9 G A 18 ? G B 18 . ? 1_555 ? 31 AC5 9 G A 23 ? G B 23 . ? 1_555 ? 32 AC5 9 G A 24 ? G B 24 . ? 1_555 ? 33 AC5 9 K F . ? K B 104 . ? 1_555 ? 34 AC6 8 A B 9 ? A E 9 . ? 1_555 ? 35 AC6 8 G B 10 ? G E 10 . ? 1_555 ? 36 AC6 8 G B 15 ? G E 15 . ? 1_555 ? 37 AC6 8 A B 19 ? A E 19 . ? 1_555 ? 38 AC6 8 U B 20 ? U E 20 . ? 1_555 ? 39 AC6 8 G B 21 ? G E 21 . ? 1_555 ? 40 AC6 8 C B 25 ? C E 25 . ? 1_555 ? 41 AC6 8 G B 26 ? G E 26 . ? 1_555 ? 42 AC7 2 A B 1 ? A E 1 . ? 1_555 ? 43 AC7 2 U B 2 ? U E 2 . ? 1_555 ? 44 AC8 9 G B 7 ? G E 7 . ? 1_555 ? 45 AC8 9 G B 8 ? G E 8 . ? 1_555 ? 46 AC8 9 G B 12 ? G E 12 . ? 1_555 ? 47 AC8 9 G B 13 ? G E 13 . ? 1_555 ? 48 AC8 9 G B 17 ? G E 17 . ? 1_555 ? 49 AC8 9 G B 18 ? G E 18 . ? 1_555 ? 50 AC8 9 G B 23 ? G E 23 . ? 1_555 ? 51 AC8 9 G B 24 ? G E 24 . ? 1_555 ? 52 AC8 9 K K . ? K E 104 . ? 1_555 ? 53 AC9 9 G B 8 ? G E 8 . ? 1_555 ? 54 AC9 9 G B 10 ? G E 10 . ? 1_555 ? 55 AC9 9 G B 13 ? G E 13 . ? 1_555 ? 56 AC9 9 G B 15 ? G E 15 . ? 1_555 ? 57 AC9 9 G B 18 ? G E 18 . ? 1_555 ? 58 AC9 9 G B 21 ? G E 21 . ? 1_555 ? 59 AC9 9 G B 24 ? G E 24 . ? 1_555 ? 60 AC9 9 G B 26 ? G E 26 . ? 1_555 ? 61 AC9 9 K J . ? K E 103 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C5 B U 2 ? ? BR B BR 103 ? ? 1.95 2 1 C5 E U 2 ? ? BR E BR 102 ? ? 2.01 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N3 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 A _pdbx_validate_symm_contact.auth_seq_id_1 16 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O5'" _pdbx_validate_symm_contact.auth_asym_id_2 E _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 1 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.11 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B A 27 ? ? "C1'" B A 27 ? ? N9 B A 27 ? ? 113.97 108.50 5.47 0.70 N 2 1 N9 E A 1 ? ? "C1'" E A 1 ? ? "C2'" E A 1 ? ? 122.72 114.00 8.72 1.30 N 3 1 "O4'" E A 1 ? ? "C1'" E A 1 ? ? N9 E A 1 ? ? 116.51 108.50 8.01 0.70 N 4 1 N3 E U 2 ? ? C2 E U 2 ? ? O2 E U 2 ? ? 117.91 122.20 -4.29 0.70 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+1/3 3 -x+y,-x,z+2/3 4 x-y,-y,-z+2/3 5 -x,-x+y,-z+1/3 6 y,x,-z # _pdbx_entry_details.entry_id 6V9D _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id E _pdbx_unobs_or_zero_occ_residues.auth_comp_id U _pdbx_unobs_or_zero_occ_residues.auth_seq_id 28 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id U _pdbx_unobs_or_zero_occ_residues.label_seq_id 28 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BR BR BR N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 K K K N N 112 QW4 C10 C N N 113 QW4 C12 C N N 114 QW4 C01 C N N 115 QW4 C02 C N N 116 QW4 C04 C N N 117 QW4 C06 C Y N 118 QW4 C07 C N N 119 QW4 C08 C N N 120 QW4 C09 C N N 121 QW4 C13 C Y N 122 QW4 C14 C Y N 123 QW4 C15 C Y N 124 QW4 C16 C Y N 125 QW4 C17 C Y N 126 QW4 C18 C Y N 127 QW4 C20 C Y N 128 QW4 C21 C Y N 129 QW4 C22 C Y N 130 QW4 C23 C Y N 131 QW4 C24 C Y N 132 QW4 C25 C Y N 133 QW4 N05 N Y N 134 QW4 N11 N N N 135 QW4 O03 O N N 136 QW4 S19 S Y N 137 QW4 H1 H N N 138 QW4 H2 H N N 139 QW4 H3 H N N 140 QW4 H4 H N N 141 QW4 H5 H N N 142 QW4 H6 H N N 143 QW4 H7 H N N 144 QW4 H8 H N N 145 QW4 H9 H N N 146 QW4 H10 H N N 147 QW4 H12 H N N 148 QW4 H13 H N N 149 QW4 H14 H N N 150 QW4 H15 H N N 151 QW4 H16 H N N 152 QW4 H17 H N N 153 QW4 H18 H N N 154 QW4 H19 H N N 155 QW4 H20 H N N 156 U OP3 O N N 157 U P P N N 158 U OP1 O N N 159 U OP2 O N N 160 U "O5'" O N N 161 U "C5'" C N N 162 U "C4'" C N R 163 U "O4'" O N N 164 U "C3'" C N S 165 U "O3'" O N N 166 U "C2'" C N R 167 U "O2'" O N N 168 U "C1'" C N R 169 U N1 N N N 170 U C2 C N N 171 U O2 O N N 172 U N3 N N N 173 U C4 C N N 174 U O4 O N N 175 U C5 C N N 176 U C6 C N N 177 U HOP3 H N N 178 U HOP2 H N N 179 U "H5'" H N N 180 U "H5''" H N N 181 U "H4'" H N N 182 U "H3'" H N N 183 U "HO3'" H N N 184 U "H2'" H N N 185 U "HO2'" H N N 186 U "H1'" H N N 187 U H3 H N N 188 U H5 H N N 189 U H6 H N N 190 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 QW4 C22 C21 doub Y N 116 QW4 C22 C23 sing Y N 117 QW4 C21 C20 sing Y N 118 QW4 O03 C02 doub N N 119 QW4 C23 C24 doub Y N 120 QW4 C20 S19 sing Y N 121 QW4 C20 C25 doub Y N 122 QW4 S19 C06 sing Y N 123 QW4 C24 C25 sing Y N 124 QW4 C25 N05 sing Y N 125 QW4 C02 C01 sing N N 126 QW4 C02 C04 sing N N 127 QW4 N05 C06 doub Y N 128 QW4 N05 C04 sing N N 129 QW4 C06 C07 sing N N 130 QW4 C09 C10 doub N N 131 QW4 C09 C08 sing N N 132 QW4 C10 N11 sing N N 133 QW4 C07 C08 doub N E 134 QW4 C08 C18 sing N N 135 QW4 N11 C12 sing N N 136 QW4 N11 C13 sing N N 137 QW4 C18 C13 doub Y N 138 QW4 C18 C17 sing Y N 139 QW4 C13 C14 sing Y N 140 QW4 C17 C16 doub Y N 141 QW4 C14 C15 doub Y N 142 QW4 C16 C15 sing Y N 143 QW4 C10 H1 sing N N 144 QW4 C12 H2 sing N N 145 QW4 C12 H3 sing N N 146 QW4 C12 H4 sing N N 147 QW4 C01 H5 sing N N 148 QW4 C01 H6 sing N N 149 QW4 C01 H7 sing N N 150 QW4 C04 H8 sing N N 151 QW4 C04 H9 sing N N 152 QW4 C07 H10 sing N N 153 QW4 C09 H12 sing N N 154 QW4 C14 H13 sing N N 155 QW4 C15 H14 sing N N 156 QW4 C16 H15 sing N N 157 QW4 C17 H16 sing N N 158 QW4 C21 H17 sing N N 159 QW4 C22 H18 sing N N 160 QW4 C23 H19 sing N N 161 QW4 C24 H20 sing N N 162 U OP3 P sing N N 163 U OP3 HOP3 sing N N 164 U P OP1 doub N N 165 U P OP2 sing N N 166 U P "O5'" sing N N 167 U OP2 HOP2 sing N N 168 U "O5'" "C5'" sing N N 169 U "C5'" "C4'" sing N N 170 U "C5'" "H5'" sing N N 171 U "C5'" "H5''" sing N N 172 U "C4'" "O4'" sing N N 173 U "C4'" "C3'" sing N N 174 U "C4'" "H4'" sing N N 175 U "O4'" "C1'" sing N N 176 U "C3'" "O3'" sing N N 177 U "C3'" "C2'" sing N N 178 U "C3'" "H3'" sing N N 179 U "O3'" "HO3'" sing N N 180 U "C2'" "O2'" sing N N 181 U "C2'" "C1'" sing N N 182 U "C2'" "H2'" sing N N 183 U "O2'" "HO2'" sing N N 184 U "C1'" N1 sing N N 185 U "C1'" "H1'" sing N N 186 U N1 C2 sing N N 187 U N1 C6 sing N N 188 U C2 O2 doub N N 189 U C2 N3 sing N N 190 U N3 C4 sing N N 191 U N3 H3 sing N N 192 U C4 O4 doub N N 193 U C4 C5 sing N N 194 U C5 C6 doub N N 195 U C5 H5 sing N N 196 U C6 H6 sing N N 197 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6V9D 'double helix' 6V9D 'quadruple helix' # _ndb_struct_na_base_pair.model_number 1 _ndb_struct_na_base_pair.i_label_asym_id A _ndb_struct_na_base_pair.i_label_comp_id A _ndb_struct_na_base_pair.i_label_seq_id 1 _ndb_struct_na_base_pair.i_symmetry 1_555 _ndb_struct_na_base_pair.j_label_asym_id B _ndb_struct_na_base_pair.j_label_comp_id G _ndb_struct_na_base_pair.j_label_seq_id 6 _ndb_struct_na_base_pair.j_symmetry 1_555 _ndb_struct_na_base_pair.shear 0.084 _ndb_struct_na_base_pair.stretch 1.503 _ndb_struct_na_base_pair.stagger -0.362 _ndb_struct_na_base_pair.buckle -1.366 _ndb_struct_na_base_pair.propeller -8.764 _ndb_struct_na_base_pair.opening -15.444 _ndb_struct_na_base_pair.pair_number 1 _ndb_struct_na_base_pair.pair_name B_A1:G6_E _ndb_struct_na_base_pair.i_auth_asym_id B _ndb_struct_na_base_pair.i_auth_seq_id 1 _ndb_struct_na_base_pair.i_PDB_ins_code ? _ndb_struct_na_base_pair.j_auth_asym_id E _ndb_struct_na_base_pair.j_auth_seq_id 6 _ndb_struct_na_base_pair.j_PDB_ins_code ? _ndb_struct_na_base_pair.hbond_type_28 8 _ndb_struct_na_base_pair.hbond_type_12 1 # _space_group.name_H-M_alt 'P 31 2 1' _space_group.name_Hall ;P 31 2" ; _space_group.IT_number 152 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 6V9D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.020443 _atom_sites.fract_transf_matrix[1][2] 0.011803 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023605 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008132 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 16.37977 2.54835 ? ? 4.54127 84.28225 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_