HEADER BLOOD CLOTTING 13-DEC-19 6V9G TITLE KINDLIN-3 DOUBLE DELETION MUTANT LONG FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERMITIN FAMILY HOMOLOG 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KINDLIN-3,MIG2-LIKE PROTEIN,UNC-112-RELATED PROTEIN 2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FERMT3, KIND3, MIG2B, URP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTEGRIN BINDING PROTEIN, BLOOD CLOTTING, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Z.XU,T.L.ZHANG,Z.XU,J.J.SUN,J.P.DING,Y.Q.MA REVDAT 2 11-OCT-23 6V9G 1 REMARK REVDAT 1 22-JUL-20 6V9G 0 JRNL AUTH J.SUN,D.XIAO,Y.NI,T.ZHANG,Z.CAO,Z.XU,H.NGUYEN,J.ZHANG, JRNL AUTH 2 G.C.WHITE,J.DING,Y.Q.MA,Z.XU JRNL TITL STRUCTURE BASIS OF THE FERM DOMAIN OF KINDLIN-3 IN JRNL TITL 2 SUPPORTING INTEGRIN ALPHA IIB BETA 3 ACTIVATION IN JRNL TITL 3 PLATELETS. JRNL REF BLOOD ADV V. 4 3128 2020 JRNL REFN ESSN 2473-9537 JRNL PMID 32649767 JRNL DOI 10.1182/BLOODADVANCES.2020001575 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3451 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.828 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6946 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9415 ; 1.280 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 821 ; 5.792 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 355 ;36.304 ;22.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1207 ;18.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 71 ;20.194 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1013 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5324 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 659 REMARK 3 ORIGIN FOR THE GROUP (A): -40.4736 -35.8200 25.7307 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.1120 REMARK 3 T33: 0.1538 T12: 0.0219 REMARK 3 T13: 0.0005 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.3014 L22: 0.2794 REMARK 3 L33: 0.5404 L12: 0.2176 REMARK 3 L13: -0.0082 L23: -0.2567 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0159 S13: -0.0585 REMARK 3 S21: 0.0159 S22: -0.0412 S23: -0.0367 REMARK 3 S31: -0.0249 S32: 0.0267 S33: 0.0315 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 659 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5493 0.3500 8.4706 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.1615 REMARK 3 T33: 0.1073 T12: -0.0108 REMARK 3 T13: -0.0224 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 0.4060 L22: 0.9967 REMARK 3 L33: 0.2211 L12: -0.0388 REMARK 3 L13: -0.0927 L23: 0.4169 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.0017 S13: -0.0041 REMARK 3 S21: -0.1131 S22: 0.0204 S23: 0.0414 REMARK 3 S31: -0.0472 S32: 0.0793 S33: -0.0188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6V9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000246031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XPY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM NITRATE, 12% PEG3350, REMARK 280 30% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.86400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.27700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.27700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.86400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 MET A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 ASP A 10 REMARK 465 TYR A 11 REMARK 465 ILE A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 LYS A 147 REMARK 465 LYS A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 LYS A 151 REMARK 465 LYS A 152 REMARK 465 LYS A 153 REMARK 465 GLU A 154 REMARK 465 LYS A 155 REMARK 465 GLU A 156 REMARK 465 PRO A 157 REMARK 465 GLU A 158 REMARK 465 GLU A 159 REMARK 465 GLU A 459 REMARK 465 VAL A 460 REMARK 465 GLY A 461 REMARK 465 GLU A 462 REMARK 465 PRO A 463 REMARK 465 ALA A 464 REMARK 465 GLY A 465 REMARK 465 THR A 466 REMARK 465 ASP A 467 REMARK 465 PRO A 468 REMARK 465 GLY A 469 REMARK 465 LEU A 470 REMARK 465 ASP A 471 REMARK 465 ASP A 472 REMARK 465 LEU A 473 REMARK 465 ASP A 474 REMARK 465 VAL A 475 REMARK 465 ALA A 476 REMARK 465 LEU A 477 REMARK 465 SER A 478 REMARK 465 ASN A 479 REMARK 465 LEU A 480 REMARK 465 GLU A 481 REMARK 465 VAL A 482 REMARK 465 LYS A 483 REMARK 465 LEU A 484 REMARK 465 GLU A 485 REMARK 465 GLY A 486 REMARK 465 SER A 487 REMARK 465 ALA A 488 REMARK 465 PRO A 489 REMARK 465 THR A 490 REMARK 465 ASP A 491 REMARK 465 VAL A 492 REMARK 465 LEU A 493 REMARK 465 ALA A 494 REMARK 465 GLU A 495 REMARK 465 ALA A 643 REMARK 465 ARG A 644 REMARK 465 GLY A 645 REMARK 465 GLU A 646 REMARK 465 HIS A 660 REMARK 465 GLU A 661 REMARK 465 ALA A 662 REMARK 465 PHE A 663 REMARK 465 LEU A 664 REMARK 465 GLU A 665 REMARK 465 HIS A 666 REMARK 465 HIS A 667 REMARK 465 HIS A 668 REMARK 465 HIS A 669 REMARK 465 HIS A 670 REMARK 465 HIS A 671 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 MET B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 ASP B 10 REMARK 465 TYR B 11 REMARK 465 ILE B 12 REMARK 465 ASP B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 LYS B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 LYS B 151 REMARK 465 LYS B 152 REMARK 465 LYS B 153 REMARK 465 GLU B 154 REMARK 465 LYS B 155 REMARK 465 GLU B 156 REMARK 465 PRO B 157 REMARK 465 GLU B 158 REMARK 465 GLU B 159 REMARK 465 GLU B 459 REMARK 465 VAL B 460 REMARK 465 GLY B 461 REMARK 465 GLU B 462 REMARK 465 PRO B 463 REMARK 465 ALA B 464 REMARK 465 GLY B 465 REMARK 465 THR B 466 REMARK 465 ASP B 467 REMARK 465 PRO B 468 REMARK 465 GLY B 469 REMARK 465 LEU B 470 REMARK 465 ASP B 471 REMARK 465 ASP B 472 REMARK 465 LEU B 473 REMARK 465 ASP B 474 REMARK 465 VAL B 475 REMARK 465 ALA B 476 REMARK 465 LEU B 477 REMARK 465 SER B 478 REMARK 465 ASN B 479 REMARK 465 LEU B 480 REMARK 465 GLU B 481 REMARK 465 VAL B 482 REMARK 465 LYS B 483 REMARK 465 LEU B 484 REMARK 465 GLU B 485 REMARK 465 GLY B 486 REMARK 465 SER B 487 REMARK 465 ALA B 488 REMARK 465 PRO B 489 REMARK 465 THR B 490 REMARK 465 ASP B 491 REMARK 465 VAL B 492 REMARK 465 LEU B 493 REMARK 465 ALA B 494 REMARK 465 GLU B 495 REMARK 465 GLY B 496 REMARK 465 LEU B 497 REMARK 465 ARG B 509 REMARK 465 LYS B 510 REMARK 465 PHE B 511 REMARK 465 HIS B 660 REMARK 465 GLU B 661 REMARK 465 ALA B 662 REMARK 465 PHE B 663 REMARK 465 LEU B 664 REMARK 465 GLU B 665 REMARK 465 HIS B 666 REMARK 465 HIS B 667 REMARK 465 HIS B 668 REMARK 465 HIS B 669 REMARK 465 HIS B 670 REMARK 465 HIS B 671 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 36 CG1 CG2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 THR B 37 OG1 CG2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 107 -10.11 84.74 REMARK 500 ASP A 264 62.10 -117.68 REMARK 500 ALA A 622 -138.50 55.40 REMARK 500 VAL B 22 -8.10 -143.13 REMARK 500 GLU B 24 -83.15 -104.85 REMARK 500 GLU B 28 39.08 -157.82 REMARK 500 VAL B 36 -35.10 -141.01 REMARK 500 THR B 37 14.58 59.89 REMARK 500 ARG B 212 2.37 -69.19 REMARK 500 SER B 307 -79.87 -110.09 REMARK 500 PHE B 507 41.86 -85.35 REMARK 500 ALA B 622 -137.23 50.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CDNA OF HUMAN KINDLIN-3 (GENBANK ID: NM_031471) USED FOR REMARK 999 EXPRESSING KINDLIN-3 PROTEIN IN THIS STUDY IS A SHORT VARIANT, REMARK 999 RESULTING IN 4 RESIDUES (IPRR) MISSING WHEN COMPARED TO Q86UX7 IN REMARK 999 UNIPROT DBREF 6V9G A 1 165 UNP Q86UX7 URP2_HUMAN 1 165 DBREF 6V9G A 195 493 UNP Q86UX7 URP2_HUMAN 195 343 DBREF 6V9G A 494 663 UNP Q86UX7 URP2_HUMAN 498 667 DBREF 6V9G B 1 165 UNP Q86UX7 URP2_HUMAN 1 165 DBREF 6V9G B 195 493 UNP Q86UX7 URP2_HUMAN 195 343 DBREF 6V9G B 494 663 UNP Q86UX7 URP2_HUMAN 498 667 SEQADV 6V9G LEU A 664 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G GLU A 665 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS A 666 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS A 667 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS A 668 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS A 669 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS A 670 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS A 671 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G LEU B 664 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G GLU B 665 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS B 666 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS B 667 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS B 668 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS B 669 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS B 670 UNP Q86UX7 EXPRESSION TAG SEQADV 6V9G HIS B 671 UNP Q86UX7 EXPRESSION TAG SEQRES 1 A 492 MET ALA GLY MET LYS THR ALA SER GLY ASP TYR ILE ASP SEQRES 2 A 492 SER SER TRP GLU LEU ARG VAL PHE VAL GLY GLU GLU ASP SEQRES 3 A 492 PRO GLU ALA GLU SER VAL THR LEU ARG VAL THR GLY GLU SEQRES 4 A 492 SER HIS ILE GLY GLY VAL LEU LEU LYS ILE VAL GLU GLN SEQRES 5 A 492 ILE ASN ARG LYS GLN ASP TRP SER ASP HIS ALA ILE TRP SEQRES 6 A 492 TRP GLU GLN LYS ARG GLN TRP LEU LEU GLN THR HIS TRP SEQRES 7 A 492 THR LEU ASP LYS TYR GLY ILE LEU ALA ASP ALA ARG LEU SEQRES 8 A 492 PHE PHE GLY PRO GLN HIS ARG PRO VAL ILE LEU ARG LEU SEQRES 9 A 492 PRO ASN ARG ARG ALA LEU ARG LEU ARG ALA SER PHE SER SEQRES 10 A 492 GLN PRO LEU PHE GLN ALA VAL ALA ALA ILE CYS ARG LEU SEQRES 11 A 492 LEU SER ILE ARG HIS PRO GLU GLU LEU SER LEU LEU ARG SEQRES 12 A 492 ALA PRO GLU LYS LYS GLU LYS LYS LYS LYS GLU LYS GLU SEQRES 13 A 492 PRO GLU GLU GLU LEU TYR ASP LEU SER TYR HIS MET LEU SEQRES 14 A 492 SER ARG PRO GLN PRO PRO PRO ASP PRO LEU LEU LEU GLN SEQRES 15 A 492 ARG LEU PRO ARG PRO SER SER LEU SER ASP LYS THR GLN SEQRES 16 A 492 LEU HIS SER ARG TRP LEU ASP SER SER ARG CYS LEU MET SEQRES 17 A 492 GLN GLN GLY ILE LYS ALA GLY ASP ALA LEU TRP LEU ARG SEQRES 18 A 492 PHE LYS TYR TYR SER PHE PHE ASP LEU ASP PRO LYS THR SEQRES 19 A 492 ASP PRO VAL ARG LEU THR GLN LEU TYR GLU GLN ALA ARG SEQRES 20 A 492 TRP ASP LEU LEU LEU GLU GLU ILE ASP CYS THR GLU GLU SEQRES 21 A 492 GLU MET MET VAL PHE ALA ALA LEU GLN TYR HIS ILE ASN SEQRES 22 A 492 LYS LEU SER GLN SER GLY GLU VAL GLY GLU PRO ALA GLY SEQRES 23 A 492 THR ASP PRO GLY LEU ASP ASP LEU ASP VAL ALA LEU SER SEQRES 24 A 492 ASN LEU GLU VAL LYS LEU GLU GLY SER ALA PRO THR ASP SEQRES 25 A 492 VAL LEU ALA GLU GLY LEU ASN PRO TYR GLY LEU VAL ALA SEQRES 26 A 492 PRO ARG PHE GLN ARG LYS PHE LYS ALA LYS GLN LEU THR SEQRES 27 A 492 PRO ARG ILE LEU GLU ALA HIS GLN ASN VAL ALA GLN LEU SEQRES 28 A 492 SER LEU ALA GLU ALA GLN LEU ARG PHE ILE GLN ALA TRP SEQRES 29 A 492 GLN SER LEU PRO ASP PHE GLY ILE SER TYR VAL MET VAL SEQRES 30 A 492 ARG PHE LYS GLY SER ARG LYS ASP GLU ILE LEU GLY ILE SEQRES 31 A 492 ALA ASN ASN ARG LEU ILE ARG ILE ASP LEU ALA VAL GLY SEQRES 32 A 492 ASP VAL VAL LYS THR TRP ARG PHE SER ASN MET ARG GLN SEQRES 33 A 492 TRP ASN VAL ASN TRP ASP ILE ARG GLN VAL ALA ILE GLU SEQRES 34 A 492 PHE ASP GLU HIS ILE ASN VAL ALA PHE SER CYS VAL SER SEQRES 35 A 492 ALA SER CYS ARG ILE VAL HIS GLU TYR ILE GLY GLY TYR SEQRES 36 A 492 ILE PHE LEU SER THR ARG GLU ARG ALA ARG GLY GLU GLU SEQRES 37 A 492 LEU ASP GLU ASP LEU PHE LEU GLN LEU THR GLY GLY HIS SEQRES 38 A 492 GLU ALA PHE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 492 MET ALA GLY MET LYS THR ALA SER GLY ASP TYR ILE ASP SEQRES 2 B 492 SER SER TRP GLU LEU ARG VAL PHE VAL GLY GLU GLU ASP SEQRES 3 B 492 PRO GLU ALA GLU SER VAL THR LEU ARG VAL THR GLY GLU SEQRES 4 B 492 SER HIS ILE GLY GLY VAL LEU LEU LYS ILE VAL GLU GLN SEQRES 5 B 492 ILE ASN ARG LYS GLN ASP TRP SER ASP HIS ALA ILE TRP SEQRES 6 B 492 TRP GLU GLN LYS ARG GLN TRP LEU LEU GLN THR HIS TRP SEQRES 7 B 492 THR LEU ASP LYS TYR GLY ILE LEU ALA ASP ALA ARG LEU SEQRES 8 B 492 PHE PHE GLY PRO GLN HIS ARG PRO VAL ILE LEU ARG LEU SEQRES 9 B 492 PRO ASN ARG ARG ALA LEU ARG LEU ARG ALA SER PHE SER SEQRES 10 B 492 GLN PRO LEU PHE GLN ALA VAL ALA ALA ILE CYS ARG LEU SEQRES 11 B 492 LEU SER ILE ARG HIS PRO GLU GLU LEU SER LEU LEU ARG SEQRES 12 B 492 ALA PRO GLU LYS LYS GLU LYS LYS LYS LYS GLU LYS GLU SEQRES 13 B 492 PRO GLU GLU GLU LEU TYR ASP LEU SER TYR HIS MET LEU SEQRES 14 B 492 SER ARG PRO GLN PRO PRO PRO ASP PRO LEU LEU LEU GLN SEQRES 15 B 492 ARG LEU PRO ARG PRO SER SER LEU SER ASP LYS THR GLN SEQRES 16 B 492 LEU HIS SER ARG TRP LEU ASP SER SER ARG CYS LEU MET SEQRES 17 B 492 GLN GLN GLY ILE LYS ALA GLY ASP ALA LEU TRP LEU ARG SEQRES 18 B 492 PHE LYS TYR TYR SER PHE PHE ASP LEU ASP PRO LYS THR SEQRES 19 B 492 ASP PRO VAL ARG LEU THR GLN LEU TYR GLU GLN ALA ARG SEQRES 20 B 492 TRP ASP LEU LEU LEU GLU GLU ILE ASP CYS THR GLU GLU SEQRES 21 B 492 GLU MET MET VAL PHE ALA ALA LEU GLN TYR HIS ILE ASN SEQRES 22 B 492 LYS LEU SER GLN SER GLY GLU VAL GLY GLU PRO ALA GLY SEQRES 23 B 492 THR ASP PRO GLY LEU ASP ASP LEU ASP VAL ALA LEU SER SEQRES 24 B 492 ASN LEU GLU VAL LYS LEU GLU GLY SER ALA PRO THR ASP SEQRES 25 B 492 VAL LEU ALA GLU GLY LEU ASN PRO TYR GLY LEU VAL ALA SEQRES 26 B 492 PRO ARG PHE GLN ARG LYS PHE LYS ALA LYS GLN LEU THR SEQRES 27 B 492 PRO ARG ILE LEU GLU ALA HIS GLN ASN VAL ALA GLN LEU SEQRES 28 B 492 SER LEU ALA GLU ALA GLN LEU ARG PHE ILE GLN ALA TRP SEQRES 29 B 492 GLN SER LEU PRO ASP PHE GLY ILE SER TYR VAL MET VAL SEQRES 30 B 492 ARG PHE LYS GLY SER ARG LYS ASP GLU ILE LEU GLY ILE SEQRES 31 B 492 ALA ASN ASN ARG LEU ILE ARG ILE ASP LEU ALA VAL GLY SEQRES 32 B 492 ASP VAL VAL LYS THR TRP ARG PHE SER ASN MET ARG GLN SEQRES 33 B 492 TRP ASN VAL ASN TRP ASP ILE ARG GLN VAL ALA ILE GLU SEQRES 34 B 492 PHE ASP GLU HIS ILE ASN VAL ALA PHE SER CYS VAL SER SEQRES 35 B 492 ALA SER CYS ARG ILE VAL HIS GLU TYR ILE GLY GLY TYR SEQRES 36 B 492 ILE PHE LEU SER THR ARG GLU ARG ALA ARG GLY GLU GLU SEQRES 37 B 492 LEU ASP GLU ASP LEU PHE LEU GLN LEU THR GLY GLY HIS SEQRES 38 B 492 GLU ALA PHE LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *221(H2 O) HELIX 1 AA1 HIS A 41 GLN A 52 1 12 HELIX 2 AA2 THR A 79 GLY A 84 1 6 HELIX 3 AA3 PRO A 119 LEU A 131 1 13 HELIX 4 AA4 HIS A 135 GLU A 137 5 3 HELIX 5 AA5 SER A 165 ARG A 200 1 7 HELIX 6 AA6 ASP A 206 LEU A 213 1 8 HELIX 7 AA7 LEU A 219 TRP A 229 5 11 HELIX 8 AA8 LEU A 236 GLY A 240 5 5 HELIX 9 AA9 ASP A 264 LEU A 281 1 18 HELIX 10 AB1 THR A 287 SER A 307 1 21 HELIX 11 AB2 ASN A 498 LEU A 502 5 5 HELIX 12 AB3 ALA A 504 PHE A 511 1 8 HELIX 13 AB4 LYS A 512 ASN A 526 1 15 HELIX 14 AB5 SER A 531 SER A 545 1 15 HELIX 15 AB6 SER A 623 SER A 638 1 16 HELIX 16 AB7 ASP A 649 THR A 657 1 9 HELIX 17 AB8 HIS B 41 ILE B 53 1 13 HELIX 18 AB9 THR B 79 GLY B 84 1 6 HELIX 19 AC1 PRO B 119 SER B 132 1 14 HELIX 20 AC2 HIS B 135 GLU B 137 5 3 HELIX 21 AC3 TYR B 195 ARG B 200 1 6 HELIX 22 AC4 LEU B 219 TRP B 229 5 11 HELIX 23 AC5 LEU B 236 GLY B 240 5 5 HELIX 24 AC6 ASP B 264 LEU B 281 1 18 HELIX 25 AC7 THR B 287 GLN B 306 1 20 HELIX 26 AC8 ASN B 498 VAL B 503 5 6 HELIX 27 AC9 ALA B 513 ASN B 526 1 14 HELIX 28 AD1 SER B 531 SER B 545 1 15 HELIX 29 AD2 TRP B 600 ILE B 602 5 3 HELIX 30 AD3 SER B 623 SER B 638 1 16 HELIX 31 AD4 ASP B 649 THR B 657 1 9 SHEET 1 AA1 5 SER A 31 VAL A 36 0 SHEET 2 AA1 5 TRP A 16 PHE A 21 -1 N LEU A 18 O LEU A 34 SHEET 3 AA1 5 LEU A 91 PRO A 95 1 O PHE A 93 N PHE A 21 SHEET 4 AA1 5 HIS A 62 TRP A 66 -1 N TRP A 65 O PHE A 92 SHEET 5 AA1 5 GLN A 71 TRP A 72 -1 O GLN A 71 N TRP A 66 SHEET 1 AA2 4 ALA A 109 SER A 115 0 SHEET 2 AA2 4 HIS A 97 ARG A 103 -1 N LEU A 102 O LEU A 110 SHEET 3 AA2 4 ALA A 246 PHE A 251 1 O LEU A 247 N ARG A 103 SHEET 4 AA2 4 LEU A 139 LEU A 142 -1 N LEU A 142 O TRP A 248 SHEET 1 AA3 7 VAL A 584 ARG A 589 0 SHEET 2 AA3 7 ARG A 573 ILE A 577 -1 N ARG A 576 O VAL A 585 SHEET 3 AA3 7 GLU A 565 ILE A 569 -1 N ILE A 566 O ILE A 577 SHEET 4 AA3 7 SER A 552 PHE A 558 -1 N VAL A 554 O LEU A 567 SHEET 5 AA3 7 ILE A 613 CYS A 619 -1 O SER A 618 N ARG A 557 SHEET 6 AA3 7 GLN A 604 PHE A 609 -1 N PHE A 609 O ILE A 613 SHEET 7 AA3 7 MET A 593 ASN A 599 -1 N GLN A 595 O GLU A 608 SHEET 1 AA4 2 GLU B 17 PHE B 21 0 SHEET 2 AA4 2 SER B 31 ARG B 35 -1 O LEU B 34 N LEU B 18 SHEET 1 AA5 3 GLN B 71 TRP B 72 0 SHEET 2 AA5 3 HIS B 62 TRP B 66 -1 N TRP B 66 O GLN B 71 SHEET 3 AA5 3 LEU B 91 PRO B 95 -1 O PHE B 92 N TRP B 65 SHEET 1 AA6 5 LEU B 139 LEU B 142 0 SHEET 2 AA6 5 ALA B 246 PHE B 251 -1 O TRP B 248 N LEU B 142 SHEET 3 AA6 5 HIS B 97 ARG B 103 1 N ARG B 103 O LEU B 247 SHEET 4 AA6 5 ALA B 109 SER B 115 -1 O LEU B 110 N LEU B 102 SHEET 5 AA6 5 LEU B 161 TYR B 162 1 O TYR B 162 N ALA B 109 SHEET 1 AA7 7 VAL B 584 ARG B 589 0 SHEET 2 AA7 7 ARG B 573 ILE B 577 -1 N ARG B 576 O VAL B 585 SHEET 3 AA7 7 GLU B 565 ILE B 569 -1 N ILE B 566 O ILE B 577 SHEET 4 AA7 7 SER B 552 PHE B 558 -1 N VAL B 554 O LEU B 567 SHEET 5 AA7 7 ILE B 613 CYS B 619 -1 O SER B 618 N ARG B 557 SHEET 6 AA7 7 GLN B 604 PHE B 609 -1 N ILE B 607 O VAL B 615 SHEET 7 AA7 7 MET B 593 ASN B 599 -1 N ASN B 597 O ALA B 606 CRYST1 67.728 129.171 134.554 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007432 0.00000