data_6VAR # _entry.id 6VAR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VAR pdb_00006var 10.2210/pdb6var/pdb WWPDB D_1000243858 ? ? BMRB 30701 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details '61 nt human Hepatitis B virus epsilon pre-genomic RNA' _pdbx_database_related.db_id 30701 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6VAR _pdbx_database_status.recvd_initial_deposition_date 2019-12-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'LeBlanc, R.M.' 1 ? 'Kasprzak, W.K.' 2 ? 'Longhini, A.P.' 3 ? 'Abulwerdi, F.' 4 ? 'Ginocchio, S.' 5 ? 'Shields, B.' 6 ? 'Nyman, J.' 7 ? 'Svirydava, M.' 8 ? 'Del Vecchio, C.' 9 ? 'Ivanic, J.' 10 ? 'Schneekloth, J.S.' 11 ? 'Dayie, T.K.' 12 ? 'Shapiro, B.A.' 13 ? 'Le Grice, S.F.J.' 14 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biomol.Struct.Dyn. _citation.journal_id_ASTM JBSDD6 _citation.journal_id_CSD 0646 _citation.journal_id_ISSN 1538-0254 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first 1 _citation.page_last 13 _citation.title ;Structural insights of the conserved "priming loop" of hepatitis B virus pre-genomic RNA. ; _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1080/07391102.2021.1934544 _citation.pdbx_database_id_PubMed 34155954 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'LeBlanc, R.M.' 1 0000-0001-9685-3689 primary 'Kasprzak, W.K.' 2 ? primary 'Longhini, A.P.' 3 ? primary 'Olenginski, L.T.' 4 ? primary 'Abulwerdi, F.' 5 ? primary 'Ginocchio, S.' 6 ? primary 'Shields, B.' 7 ? primary 'Nyman, J.' 8 ? primary 'Svirydava, M.' 9 ? primary 'Del Vecchio, C.' 10 ? primary 'Ivanic, J.' 11 ? primary 'Schneekloth Jr., J.S.' 12 ? primary 'Shapiro, B.A.' 13 ? primary 'Dayie, T.K.' 14 0000-0002-7119-4362 primary 'Le Grice, S.F.J.' 15 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (61-MER)' _entity.formula_weight 19541.488 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGUUCAUGUCCUACUGUUCAAGCCUCCAAGCUGUGCCUUGGGUGGCUUUGGGGCAUGGACC _entity_poly.pdbx_seq_one_letter_code_can GGUUCAUGUCCUACUGUUCAAGCCUCCAAGCUGUGCCUUGGGUGGCUUUGGGGCAUGGACC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 U n 1 5 C n 1 6 A n 1 7 U n 1 8 G n 1 9 U n 1 10 C n 1 11 C n 1 12 U n 1 13 A n 1 14 C n 1 15 U n 1 16 G n 1 17 U n 1 18 U n 1 19 C n 1 20 A n 1 21 A n 1 22 G n 1 23 C n 1 24 C n 1 25 U n 1 26 C n 1 27 C n 1 28 A n 1 29 A n 1 30 G n 1 31 C n 1 32 U n 1 33 G n 1 34 U n 1 35 G n 1 36 C n 1 37 C n 1 38 U n 1 39 U n 1 40 G n 1 41 G n 1 42 G n 1 43 U n 1 44 G n 1 45 G n 1 46 C n 1 47 U n 1 48 U n 1 49 U n 1 50 G n 1 51 G n 1 52 G n 1 53 G n 1 54 C n 1 55 A n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 C n 1 61 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 61 _pdbx_entity_src_syn.organism_scientific 'Hepatitis B virus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 10407 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VAR _struct_ref.pdbx_db_accession 6VAR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6VAR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 61 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6VAR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 61 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 61 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 2 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 3 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 4 1 2 '3D 1H-15N NOESY' 1 isotropic 5 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 6 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 7 1 2 '2D 1H-1H NOESY' 2 isotropic 8 1 1 '2D 1H-1H NOESY' 2 isotropic 9 1 1 '3D HCN' 1 isotropic 10 1 2 '2D HNCCNCH' 1 isotropic 11 1 3 'Filter/Edit NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details 'sodium phosphate buffer' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.8 mM [U-13C; U-15N] RNA (61-MER), 100% D2O' '100% D2O' 13C/15N_D2O solution ? 2 '0.8 mM [U-13C; U-15N] RNA (61-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' 13C/15N_H2O solution ? 3 '0.7 mM 13C-selective RNA (61-MER), 100% D2O' '100% D2O' "selective-UGC-C1'-A-C2'" solution ;This sample was made from 13C-C1',C6/6-UGC and 13C-C2',C8-A rNTPs made in-house ; # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 Ascend ? Bruker 800 ? 2 'Ultrashield Plus' ? Bruker 600 ? # _pdbx_nmr_refine.entry_id 6VAR _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6VAR _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6VAR _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'peak picking' NMRView ? 'Johnson, One Moon Scientific' # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.entry_id _exptl.crystals_number _exptl.details _exptl.method _exptl.method_details ? ? ? ? ? 6VAR ? ? 'SOLUTION NMR' ? ? ? ? ? ? 6VAR ? ? 'SOLUTION SCATTERING' ? # _struct.entry_id 6VAR _struct.title '61 nt human Hepatitis B virus epsilon pre-genomic RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VAR _struct_keywords.text 'non-coding RNA, viral RNA, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 1 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 1 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 1 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 2 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 2 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 2 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 59 N1 ? ? A U 3 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 59 N6 ? ? A U 3 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 58 O6 ? ? A U 4 A G 58 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 58 N1 ? ? A U 4 A G 58 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 57 N1 ? ? A C 5 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 57 O6 ? ? A C 5 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 57 N2 ? ? A C 5 A G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 56 N3 ? ? A A 6 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 56 O4 ? ? A A 6 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 55 N1 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 55 N6 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 N3 ? ? ? 1_555 A G 53 O6 ? ? A U 9 A G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A U 9 O2 ? ? ? 1_555 A G 53 N1 ? ? A U 9 A G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 52 N1 ? ? A C 10 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 52 O6 ? ? A C 10 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 52 N2 ? ? A C 10 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 11 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 11 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 11 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A G 50 O6 ? ? A U 12 A G 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A U 12 O2 ? ? ? 1_555 A G 50 N1 ? ? A U 12 A G 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog31 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 20 N3 ? ? A U 17 A A 20 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog32 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 47 N3 ? ? A A 21 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 47 O4 ? ? A A 21 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 22 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 22 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 22 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 23 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 23 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 23 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 24 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 24 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 24 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 25 N3 ? ? ? 1_555 A G 42 O6 ? ? A U 25 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog44 hydrog ? ? A U 25 O2 ? ? ? 1_555 A G 42 N1 ? ? A U 25 A G 42 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 26 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 26 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 26 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 27 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 27 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 27 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 28 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 28 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 38 N3 ? ? A A 29 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 38 O4 ? ? A A 29 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 30 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 30 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 30 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 31 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 31 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 31 A G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6VAR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 U 15 15 15 U U A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 U 18 18 18 U U A . n A 1 19 C 19 19 19 C C A . n A 1 20 A 20 20 20 A A A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 C 24 24 24 C C A . n A 1 25 U 25 25 25 U U A . n A 1 26 C 26 26 26 C C A . n A 1 27 C 27 27 27 C C A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 U 32 32 32 U U A . n A 1 33 G 33 33 33 G G A . n A 1 34 U 34 34 34 U U A . n A 1 35 G 35 35 35 G G A . n A 1 36 C 36 36 36 C C A . n A 1 37 C 37 37 37 C C A . n A 1 38 U 38 38 38 U U A . n A 1 39 U 39 39 39 U U A . n A 1 40 G 40 40 40 G G A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 C 46 46 46 C C A . n A 1 47 U 47 47 47 U U A . n A 1 48 U 48 48 48 U U A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 G 53 53 53 G G A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 U 56 56 56 U U A . n A 1 57 G 57 57 57 G G A . n A 1 58 G 58 58 58 G G A . n A 1 59 A 59 59 59 A A A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-12-30 2 'Structure model' 1 1 2021-07-28 3 'Structure model' 1 2 2021-08-04 4 'Structure model' 1 3 2021-08-11 5 'Structure model' 1 4 2021-08-25 6 'Structure model' 1 5 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 6 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation_author 4 4 'Structure model' database_2 5 5 'Structure model' citation_author 6 6 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_citation_author.identifier_ORCID' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' 15 5 'Structure model' '_citation_author.identifier_ORCID' 16 6 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'RNA (61-MER)' 0.8 ? mM '[U-13C; U-15N]' 2 'RNA (61-MER)' 0.8 ? mM '[U-13C; U-15N]' 3 'RNA (61-MER)' 0.7 ? mM 13C-selective # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A C 19 ? ? "O3'" A C 19 ? ? P A A 20 ? ? 127.44 119.70 7.74 1.20 Y 2 2 "C3'" A C 19 ? ? "O3'" A C 19 ? ? P A A 20 ? ? 127.00 119.70 7.30 1.20 Y 3 4 "C3'" A C 19 ? ? "O3'" A C 19 ? ? P A A 20 ? ? 127.00 119.70 7.30 1.20 Y 4 6 "C3'" A C 19 ? ? "O3'" A C 19 ? ? P A A 20 ? ? 127.64 119.70 7.94 1.20 Y 5 6 "C1'" A U 43 ? ? "O4'" A U 43 ? ? "C4'" A U 43 ? ? 105.50 109.70 -4.20 0.70 N 6 7 "C3'" A C 19 ? ? "O3'" A C 19 ? ? P A A 20 ? ? 126.92 119.70 7.22 1.20 Y 7 10 "C3'" A C 19 ? ? "O3'" A C 19 ? ? P A A 20 ? ? 127.54 119.70 7.84 1.20 Y # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 C A 31 ? ? 0.061 'SIDE CHAIN' 2 10 A A 59 ? ? 0.049 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6VAR 'double helix' 6VAR 'a-form double helix' 6VAR 'hairpin loop' 6VAR 'bulge loop' 6VAR 'mismatched base pair' 6VAR 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 61 1_555 -1.204 -0.432 0.153 -3.706 4.751 -0.786 1 A_G1:C61_A A 1 ? A 61 ? 19 1 1 A G 2 1_555 A C 60 1_555 0.114 -0.108 0.056 -2.589 -2.852 2.605 2 A_G2:C60_A A 2 ? A 60 ? 19 1 1 A U 3 1_555 A A 59 1_555 -0.126 -0.161 -0.091 -6.808 -11.553 -3.779 3 A_U3:A59_A A 3 ? A 59 ? 20 1 1 A U 4 1_555 A G 58 1_555 1.970 -0.436 -0.237 -6.640 -6.068 -5.452 4 A_U4:G58_A A 4 ? A 58 ? 28 1 1 A C 5 1_555 A G 57 1_555 0.089 -0.143 -0.284 3.795 -7.965 4.320 5 A_C5:G57_A A 5 ? A 57 ? 19 1 1 A A 6 1_555 A U 56 1_555 -0.542 -0.231 0.086 2.282 -5.125 7.504 6 A_A6:U56_A A 6 ? A 56 ? 20 1 1 A U 7 1_555 A A 55 1_555 0.362 -0.240 -0.046 0.895 -5.473 3.506 7 A_U7:A55_A A 7 ? A 55 ? 20 1 1 A G 8 1_555 A C 54 1_555 -1.132 -0.406 0.111 -0.735 -1.533 4.130 8 A_G8:C54_A A 8 ? A 54 ? 19 1 1 A U 9 1_555 A G 53 1_555 1.364 -0.382 -0.479 -1.685 -1.601 3.891 9 A_U9:G53_A A 9 ? A 53 ? 28 1 1 A C 10 1_555 A G 52 1_555 0.167 -0.118 -0.530 -1.902 -4.602 6.188 10 A_C10:G52_A A 10 ? A 52 ? 19 1 1 A C 11 1_555 A G 51 1_555 1.114 -0.427 -0.284 -6.816 3.058 2.180 11 A_C11:G51_A A 11 ? A 51 ? 19 1 1 A U 12 1_555 A G 50 1_555 2.611 -0.356 0.209 -9.687 19.531 8.045 12 A_U12:G50_A A 12 ? A 50 ? 28 1 1 A A 20 1_555 A U 17 1_555 0.868 0.180 2.388 -32.933 -5.711 76.424 13 A_A20:U17_A A 20 ? A 17 ? ? 1 1 A A 21 1_555 A U 47 1_555 -0.115 -0.357 0.477 -4.613 -32.142 -23.276 14 A_A21:U47_A A 21 ? A 47 ? 20 1 1 A G 22 1_555 A C 46 1_555 -1.297 -0.461 0.060 5.242 -3.188 -2.722 15 A_G22:C46_A A 22 ? A 46 ? 19 1 1 A C 23 1_555 A G 45 1_555 0.104 -0.156 -0.241 5.435 -6.034 1.678 16 A_C23:G45_A A 23 ? A 45 ? 19 1 1 A C 24 1_555 A G 44 1_555 0.805 -0.236 0.009 3.386 7.213 2.726 17 A_C24:G44_A A 24 ? A 44 ? 19 1 1 A U 25 1_555 A G 42 1_555 1.352 -0.375 0.562 -2.334 -12.730 -5.742 18 A_U25:G42_A A 25 ? A 42 ? 28 1 1 A C 26 1_555 A G 41 1_555 0.590 -0.185 -0.048 0.886 -5.991 4.887 19 A_C26:G41_A A 26 ? A 41 ? 19 1 1 A C 27 1_555 A G 40 1_555 0.144 -0.083 -0.102 0.002 -11.649 3.401 20 A_C27:G40_A A 27 ? A 40 ? 19 1 1 A A 28 1_555 A U 39 1_555 0.034 -0.149 -0.102 -5.325 -5.995 4.829 21 A_A28:U39_A A 28 ? A 39 ? 20 1 1 A A 29 1_555 A U 38 1_555 -0.131 -0.244 -0.111 0.913 -6.672 0.124 22 A_A29:U38_A A 29 ? A 38 ? 20 1 1 A G 30 1_555 A C 37 1_555 -0.450 -0.045 -0.027 0.044 -9.095 -0.265 23 A_G30:C37_A A 30 ? A 37 ? 19 1 1 A C 31 1_555 A G 35 1_555 -0.136 -0.777 -1.729 -2.720 -6.279 16.884 24 A_C31:G35_A A 31 ? A 35 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 61 1_555 A G 2 1_555 A C 60 1_555 0.306 -1.616 3.281 -0.265 -0.490 36.010 -2.543 -0.534 3.300 -0.793 0.429 36.014 1 AA_G1G2:C60C61_AA A 1 ? A 61 ? A 2 ? A 60 ? 1 A G 2 1_555 A C 60 1_555 A U 3 1_555 A A 59 1_555 0.258 -1.617 3.138 3.927 2.004 37.082 -2.778 0.090 3.060 3.137 -6.148 37.334 2 AA_G2U3:A59C60_AA A 2 ? A 60 ? A 3 ? A 59 ? 1 A U 3 1_555 A A 59 1_555 A U 4 1_555 A G 58 1_555 -0.615 -1.160 3.372 1.527 -1.573 37.846 -1.578 1.149 3.390 -2.423 -2.351 37.907 3 AA_U3U4:G58A59_AA A 3 ? A 59 ? A 4 ? A 58 ? 1 A U 4 1_555 A G 58 1_555 A C 5 1_555 A G 57 1_555 0.665 -1.535 3.090 1.667 -1.422 24.116 -3.224 -1.076 3.212 -3.394 -3.980 24.214 4 AA_U4C5:G57G58_AA A 4 ? A 58 ? A 5 ? A 57 ? 1 A C 5 1_555 A G 57 1_555 A A 6 1_555 A U 56 1_555 0.288 -1.475 3.275 -4.035 12.167 27.618 -5.023 -1.283 2.366 23.921 7.933 30.395 5 AA_C5A6:U56G57_AA A 5 ? A 57 ? A 6 ? A 56 ? 1 A A 6 1_555 A U 56 1_555 A U 7 1_555 A A 55 1_555 -0.301 -1.322 3.287 -0.861 13.866 33.002 -4.018 0.374 2.551 23.172 1.439 35.732 6 AA_A6U7:A55U56_AA A 6 ? A 56 ? A 7 ? A 55 ? 1 A U 7 1_555 A A 55 1_555 A G 8 1_555 A C 54 1_555 0.265 -1.841 3.134 -4.385 15.139 22.091 -6.941 -1.436 1.506 34.432 9.972 27.080 7 AA_U7G8:C54A55_AA A 7 ? A 55 ? A 8 ? A 54 ? 1 A G 8 1_555 A C 54 1_555 A U 9 1_555 A G 53 1_555 0.034 -1.248 3.356 3.699 15.494 39.096 -3.277 0.320 2.688 22.072 -5.269 42.099 8 AA_G8U9:G53C54_AA A 8 ? A 54 ? A 9 ? A 53 ? 1 A U 9 1_555 A G 53 1_555 A C 10 1_555 A G 52 1_555 0.223 -1.589 3.380 2.179 12.730 24.081 -6.295 0.028 2.277 28.076 -4.806 27.280 9 AA_U9C10:G52G53_AA A 9 ? A 53 ? A 10 ? A 52 ? 1 A C 10 1_555 A G 52 1_555 A C 11 1_555 A G 51 1_555 -0.119 -1.441 3.552 -2.322 13.724 32.558 -4.412 -0.149 2.744 23.202 3.925 35.335 10 AA_C10C11:G51G52_AA A 10 ? A 52 ? A 11 ? A 51 ? 1 A C 11 1_555 A G 51 1_555 A U 12 1_555 A G 50 1_555 0.559 -1.698 3.710 -1.947 13.537 32.598 -4.875 -1.221 2.772 22.901 3.294 35.279 11 AA_C11U12:G50G51_AA A 11 ? A 51 ? A 12 ? A 50 ? 1 A A 20 1_555 A U 17 1_555 A A 21 1_555 A U 47 1_555 0.883 -0.828 5.045 -22.434 22.440 79.270 -1.417 -1.457 4.412 16.983 16.978 84.403 12 AA_A20A21:U47U17_AA A 20 ? A 17 ? A 21 ? A 47 ? 1 A A 21 1_555 A U 47 1_555 A G 22 1_555 A C 46 1_555 1.290 -1.254 3.578 -5.779 -2.579 28.098 -1.903 -3.982 3.350 -5.228 11.716 28.788 13 AA_A21G22:C46U47_AA A 21 ? A 47 ? A 22 ? A 46 ? 1 A G 22 1_555 A C 46 1_555 A C 23 1_555 A G 45 1_555 0.638 -1.393 3.436 1.467 -1.225 38.983 -1.929 -0.767 3.498 -1.835 -2.197 39.028 14 AA_G22C23:G45C46_AA A 22 ? A 46 ? A 23 ? A 45 ? 1 A C 23 1_555 A G 45 1_555 A C 24 1_555 A G 44 1_555 0.039 -1.837 3.227 0.124 5.178 35.718 -3.661 -0.046 2.941 8.388 -0.202 36.080 15 AA_C23C24:G44G45_AA A 23 ? A 45 ? A 24 ? A 44 ? 1 A C 24 1_555 A G 44 1_555 A U 25 1_555 A G 42 1_555 0.536 -1.994 3.835 -5.905 29.391 48.325 -3.812 -0.910 2.293 32.539 6.537 56.390 16 AA_C24U25:G42G44_AA A 24 ? A 44 ? A 25 ? A 42 ? 1 A U 25 1_555 A G 42 1_555 A C 26 1_555 A G 41 1_555 0.607 -1.657 3.316 3.109 12.513 30.467 -4.885 -0.578 2.508 22.583 -5.611 33.024 17 AA_U25C26:G41G42_AA A 25 ? A 42 ? A 26 ? A 41 ? 1 A C 26 1_555 A G 41 1_555 A C 27 1_555 A G 40 1_555 0.127 -1.561 3.144 2.063 4.098 26.424 -4.348 0.220 2.874 8.880 -4.471 26.812 18 AA_C26C27:G40G41_AA A 26 ? A 41 ? A 27 ? A 40 ? 1 A C 27 1_555 A G 40 1_555 A A 28 1_555 A U 39 1_555 0.271 -1.591 3.259 2.092 14.497 29.574 -5.014 -0.160 2.267 26.453 -3.818 32.930 19 AA_C27A28:U39G40_AA A 27 ? A 40 ? A 28 ? A 39 ? 1 A A 28 1_555 A U 39 1_555 A A 29 1_555 A U 38 1_555 0.102 -1.152 3.141 -1.549 7.592 31.070 -3.351 -0.442 2.781 13.903 2.836 31.999 20 AA_A28A29:U38U39_AA A 28 ? A 39 ? A 29 ? A 38 ? 1 A A 29 1_555 A U 38 1_555 A G 30 1_555 A C 37 1_555 0.037 -1.766 3.125 0.411 10.092 28.072 -5.256 0.003 2.362 20.005 -0.816 29.799 21 AA_A29G30:C37U38_AA A 29 ? A 38 ? A 30 ? A 37 ? 1 A G 30 1_555 A C 37 1_555 A C 31 1_555 A G 35 1_555 -1.009 -1.485 3.334 11.907 9.468 12.275 -7.967 7.485 0.772 31.939 -40.167 19.524 22 AA_G30C31:G35C37_AA A 30 ? A 37 ? A 31 ? A 35 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #