HEADER LYASE 18-DEC-19 6VBE TITLE CRYSTAL STRUCTURE OF RECOMBINANT MUTANT H180R OF HUMAN FUMARASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARATE HYDRATASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSFH; COMPND 5 EC: 4.2.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-SUMO KEYWDS HSFH, FUMARATE HYDRATASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.A.AJALLA,M.C.NONATO REVDAT 2 11-OCT-23 6VBE 1 REMARK REVDAT 1 23-DEC-20 6VBE 0 JRNL AUTH M.A.A.AJALLA,M.C.NOTATO JRNL TITL CRYSTAL STRUCTURE OF RECOMBINANT MUTANT H180R OF HUMAN JRNL TITL 2 FUMARASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 182979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 9163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3020 - 5.8960 1.00 5829 300 0.1395 0.1362 REMARK 3 2 5.8960 - 4.6810 1.00 5834 312 0.1462 0.1590 REMARK 3 3 4.6810 - 4.0896 1.00 5800 312 0.1164 0.1369 REMARK 3 4 4.0896 - 3.7158 1.00 5814 311 0.1242 0.1629 REMARK 3 5 3.7158 - 3.4495 1.00 5830 309 0.1437 0.1626 REMARK 3 6 3.4495 - 3.2462 1.00 5822 307 0.1529 0.1915 REMARK 3 7 3.2462 - 3.0837 1.00 5788 306 0.1517 0.1723 REMARK 3 8 3.0837 - 2.9494 1.00 5832 312 0.1508 0.1760 REMARK 3 9 2.9494 - 2.8359 1.00 5820 310 0.1514 0.2010 REMARK 3 10 2.8359 - 2.7381 1.00 5800 297 0.1595 0.2136 REMARK 3 11 2.7381 - 2.6525 1.00 5839 306 0.1581 0.2027 REMARK 3 12 2.6525 - 2.5766 1.00 5807 307 0.1687 0.2205 REMARK 3 13 2.5766 - 2.5088 1.00 5792 306 0.1764 0.2378 REMARK 3 14 2.5088 - 2.4476 1.00 5827 306 0.1775 0.2204 REMARK 3 15 2.4476 - 2.3920 1.00 5777 304 0.1734 0.2162 REMARK 3 16 2.3920 - 2.3411 1.00 5809 305 0.1794 0.2222 REMARK 3 17 2.3411 - 2.2942 1.00 5798 306 0.1815 0.1985 REMARK 3 18 2.2942 - 2.2509 1.00 5816 304 0.1889 0.2221 REMARK 3 19 2.2509 - 2.2107 1.00 5806 304 0.1976 0.2216 REMARK 3 20 2.2107 - 2.1733 1.00 5811 310 0.2125 0.2374 REMARK 3 21 2.1733 - 2.1382 1.00 5750 308 0.2522 0.2687 REMARK 3 22 2.1382 - 2.1053 0.99 5814 304 0.2605 0.2802 REMARK 3 23 2.1053 - 2.0743 0.99 5815 303 0.2683 0.2879 REMARK 3 24 2.0743 - 2.0451 0.99 5772 302 0.2766 0.3029 REMARK 3 25 2.0451 - 2.0175 1.00 5761 304 0.2792 0.2892 REMARK 3 26 2.0175 - 1.9913 1.00 5820 310 0.2930 0.3575 REMARK 3 27 1.9913 - 1.9664 0.99 5738 305 0.3196 0.3561 REMARK 3 28 1.9664 - 1.9427 0.99 5831 303 0.3481 0.3806 REMARK 3 29 1.9427 - 1.9201 1.00 5787 302 0.3867 0.4042 REMARK 3 30 1.9201 - 1.8990 0.94 5477 288 0.4346 0.4514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7134 REMARK 3 ANGLE : 0.864 9687 REMARK 3 CHIRALITY : 0.052 1125 REMARK 3 PLANARITY : 0.006 1268 REMARK 3 DIHEDRAL : 14.817 2616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : CHANEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 182979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.899 REMARK 200 RESOLUTION RANGE LOW (A) : 49.302 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 22.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5UPP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMONIUM TARTRATE DIBASIC, 14% REMARK 280 (M/V) PEG 3350, LIQUID DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.92000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.46000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.69000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.23000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.15000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.92000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.46000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.23000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.69000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 94.94000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -164.44090 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.23000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 848 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 910 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 928 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 725 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 866 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 915 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 944 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 951 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 971 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 972 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 GLN A 47 REMARK 465 ASN A 48 REMARK 465 ALA B 45 REMARK 465 SER B 46 REMARK 465 GLN B 47 REMARK 465 ASN B 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 122 CE NZ REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 LYS A 447 NZ REMARK 470 ASP A 466 CG OD1 OD2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 LYS A 470 CG CD CE NZ REMARK 470 LYS A 477 CG CD CE NZ REMARK 470 GLU A 488 CD OE1 OE2 REMARK 470 LYS A 504 CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 61 CD CE NZ REMARK 470 LYS B 115 CD CE NZ REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 ASP B 466 CG OD1 OD2 REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 LYS B 470 CG CD CE NZ REMARK 470 LYS B 477 CG CD CE NZ REMARK 470 GLU B 488 CD OE1 OE2 REMARK 470 GLU B 499 CD OE1 OE2 REMARK 470 LYS B 504 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 937 O HOH B 960 1.89 REMARK 500 O HOH B 707 O HOH B 881 2.04 REMARK 500 O HOH B 774 O HOH B 921 2.05 REMARK 500 O HOH A 917 O HOH A 932 2.05 REMARK 500 O HOH B 731 O HOH B 941 2.06 REMARK 500 NH1 ARG B 101 OE1 GLU B 105 2.08 REMARK 500 O HOH A 719 O HOH A 940 2.08 REMARK 500 O HOH B 805 O HOH B 980 2.08 REMARK 500 O HOH B 788 O HOH B 940 2.11 REMARK 500 O HOH B 771 O HOH B 938 2.12 REMARK 500 O HOH B 899 O HOH B 930 2.12 REMARK 500 O HOH B 833 O HOH B 836 2.13 REMARK 500 O HOH A 897 O HOH A 960 2.13 REMARK 500 O HOH A 834 O HOH A 943 2.13 REMARK 500 O HOH A 935 O HOH A 948 2.13 REMARK 500 O HOH A 778 O HOH A 950 2.13 REMARK 500 O41 TLA B 602 O HOH B 701 2.14 REMARK 500 O HOH B 929 O HOH B 976 2.14 REMARK 500 O1 GOL A 602 O HOH A 701 2.15 REMARK 500 O HOH A 913 O HOH A 962 2.15 REMARK 500 O HOH B 878 O HOH B 941 2.16 REMARK 500 O HOH A 728 O HOH A 960 2.18 REMARK 500 O HOH B 858 O HOH B 921 2.18 REMARK 500 O HOH B 842 O HOH B 902 2.18 REMARK 500 O HOH A 880 O HOH A 950 2.19 REMARK 500 O HOH B 903 O HOH B 919 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 465 OG SER B 366 12544 1.72 REMARK 500 O HOH A 933 O HOH A 933 12544 1.91 REMARK 500 O HOH B 758 O HOH B 943 12544 1.96 REMARK 500 O HOH B 943 O HOH B 943 12544 1.97 REMARK 500 O HOH A 882 O HOH A 943 12544 2.03 REMARK 500 O HOH A 705 O HOH A 750 12544 2.09 REMARK 500 O HOH B 960 O HOH B 970 9555 2.14 REMARK 500 O HOH A 714 O HOH A 933 12544 2.16 REMARK 500 O HOH B 856 O HOH B 940 12544 2.17 REMARK 500 O HOH A 942 O HOH B 934 12544 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 142 -154.13 -115.28 REMARK 500 THR A 277 -133.92 50.18 REMARK 500 PHE A 403 -117.69 50.13 REMARK 500 CYS A 434 -58.79 -149.83 REMARK 500 GLN B 142 -155.86 -118.01 REMARK 500 LYS B 172 3.75 58.20 REMARK 500 THR B 277 -134.31 42.49 REMARK 500 PHE B 403 -118.91 51.26 REMARK 500 CYS B 434 -63.25 -143.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 602 DBREF 6VBE A 45 510 UNP P07954 FUMH_HUMAN 45 510 DBREF 6VBE B 45 510 UNP P07954 FUMH_HUMAN 45 510 SEQADV 6VBE ARG A 180 UNP P07954 HIS 180 ENGINEERED MUTATION SEQADV 6VBE ARG B 180 UNP P07954 HIS 180 ENGINEERED MUTATION SEQRES 1 A 466 ALA SER GLN ASN SER PHE ARG ILE GLU TYR ASP THR PHE SEQRES 2 A 466 GLY GLU LEU LYS VAL PRO ASN ASP LYS TYR TYR GLY ALA SEQRES 3 A 466 GLN THR VAL ARG SER THR MET ASN PHE LYS ILE GLY GLY SEQRES 4 A 466 VAL THR GLU ARG MET PRO THR PRO VAL ILE LYS ALA PHE SEQRES 5 A 466 GLY ILE LEU LYS ARG ALA ALA ALA GLU VAL ASN GLN ASP SEQRES 6 A 466 TYR GLY LEU ASP PRO LYS ILE ALA ASN ALA ILE MET LYS SEQRES 7 A 466 ALA ALA ASP GLU VAL ALA GLU GLY LYS LEU ASN ASP HIS SEQRES 8 A 466 PHE PRO LEU VAL VAL TRP GLN THR GLY SER GLY THR GLN SEQRES 9 A 466 THR ASN MET ASN VAL ASN GLU VAL ILE SER ASN ARG ALA SEQRES 10 A 466 ILE GLU MET LEU GLY GLY GLU LEU GLY SER LYS ILE PRO SEQRES 11 A 466 VAL HIS PRO ASN ASP ARG VAL ASN LYS SER GLN SER SER SEQRES 12 A 466 ASN ASP THR PHE PRO THR ALA MET HIS ILE ALA ALA ALA SEQRES 13 A 466 ILE GLU VAL HIS GLU VAL LEU LEU PRO GLY LEU GLN LYS SEQRES 14 A 466 LEU HIS ASP ALA LEU ASP ALA LYS SER LYS GLU PHE ALA SEQRES 15 A 466 GLN ILE ILE LYS ILE GLY ARG THR HIS THR GLN ASP ALA SEQRES 16 A 466 VAL PRO LEU THR LEU GLY GLN GLU PHE SER GLY TYR VAL SEQRES 17 A 466 GLN GLN VAL LYS TYR ALA MET THR ARG ILE LYS ALA ALA SEQRES 18 A 466 MET PRO ARG ILE TYR GLU LEU ALA ALA GLY GLY THR ALA SEQRES 19 A 466 VAL GLY THR GLY LEU ASN THR ARG ILE GLY PHE ALA GLU SEQRES 20 A 466 LYS VAL ALA ALA LYS VAL ALA ALA LEU THR GLY LEU PRO SEQRES 21 A 466 PHE VAL THR ALA PRO ASN LYS PHE GLU ALA LEU ALA ALA SEQRES 22 A 466 HIS ASP ALA LEU VAL GLU LEU SER GLY ALA MET ASN THR SEQRES 23 A 466 THR ALA CYS SER LEU MET LYS ILE ALA ASN ASP ILE ARG SEQRES 24 A 466 PHE LEU GLY SER GLY PRO ARG SER GLY LEU GLY GLU LEU SEQRES 25 A 466 ILE LEU PRO GLU ASN GLU PRO GLY SER SER ILE MET PRO SEQRES 26 A 466 GLY LYS VAL ASN PRO THR GLN CYS GLU ALA MET THR MET SEQRES 27 A 466 VAL ALA ALA GLN VAL MET GLY ASN HIS VAL ALA VAL THR SEQRES 28 A 466 VAL GLY GLY SER ASN GLY HIS PHE GLU LEU ASN VAL PHE SEQRES 29 A 466 LYS PRO MET MET ILE LYS ASN VAL LEU HIS SER ALA ARG SEQRES 30 A 466 LEU LEU GLY ASP ALA SER VAL SER PHE THR GLU ASN CYS SEQRES 31 A 466 VAL VAL GLY ILE GLN ALA ASN THR GLU ARG ILE ASN LYS SEQRES 32 A 466 LEU MET ASN GLU SER LEU MET LEU VAL THR ALA LEU ASN SEQRES 33 A 466 PRO HIS ILE GLY TYR ASP LYS ALA ALA LYS ILE ALA LYS SEQRES 34 A 466 THR ALA HIS LYS ASN GLY SER THR LEU LYS GLU THR ALA SEQRES 35 A 466 ILE GLU LEU GLY TYR LEU THR ALA GLU GLN PHE ASP GLU SEQRES 36 A 466 TRP VAL LYS PRO LYS ASP MET LEU GLY PRO LYS SEQRES 1 B 466 ALA SER GLN ASN SER PHE ARG ILE GLU TYR ASP THR PHE SEQRES 2 B 466 GLY GLU LEU LYS VAL PRO ASN ASP LYS TYR TYR GLY ALA SEQRES 3 B 466 GLN THR VAL ARG SER THR MET ASN PHE LYS ILE GLY GLY SEQRES 4 B 466 VAL THR GLU ARG MET PRO THR PRO VAL ILE LYS ALA PHE SEQRES 5 B 466 GLY ILE LEU LYS ARG ALA ALA ALA GLU VAL ASN GLN ASP SEQRES 6 B 466 TYR GLY LEU ASP PRO LYS ILE ALA ASN ALA ILE MET LYS SEQRES 7 B 466 ALA ALA ASP GLU VAL ALA GLU GLY LYS LEU ASN ASP HIS SEQRES 8 B 466 PHE PRO LEU VAL VAL TRP GLN THR GLY SER GLY THR GLN SEQRES 9 B 466 THR ASN MET ASN VAL ASN GLU VAL ILE SER ASN ARG ALA SEQRES 10 B 466 ILE GLU MET LEU GLY GLY GLU LEU GLY SER LYS ILE PRO SEQRES 11 B 466 VAL HIS PRO ASN ASP ARG VAL ASN LYS SER GLN SER SER SEQRES 12 B 466 ASN ASP THR PHE PRO THR ALA MET HIS ILE ALA ALA ALA SEQRES 13 B 466 ILE GLU VAL HIS GLU VAL LEU LEU PRO GLY LEU GLN LYS SEQRES 14 B 466 LEU HIS ASP ALA LEU ASP ALA LYS SER LYS GLU PHE ALA SEQRES 15 B 466 GLN ILE ILE LYS ILE GLY ARG THR HIS THR GLN ASP ALA SEQRES 16 B 466 VAL PRO LEU THR LEU GLY GLN GLU PHE SER GLY TYR VAL SEQRES 17 B 466 GLN GLN VAL LYS TYR ALA MET THR ARG ILE LYS ALA ALA SEQRES 18 B 466 MET PRO ARG ILE TYR GLU LEU ALA ALA GLY GLY THR ALA SEQRES 19 B 466 VAL GLY THR GLY LEU ASN THR ARG ILE GLY PHE ALA GLU SEQRES 20 B 466 LYS VAL ALA ALA LYS VAL ALA ALA LEU THR GLY LEU PRO SEQRES 21 B 466 PHE VAL THR ALA PRO ASN LYS PHE GLU ALA LEU ALA ALA SEQRES 22 B 466 HIS ASP ALA LEU VAL GLU LEU SER GLY ALA MET ASN THR SEQRES 23 B 466 THR ALA CYS SER LEU MET LYS ILE ALA ASN ASP ILE ARG SEQRES 24 B 466 PHE LEU GLY SER GLY PRO ARG SER GLY LEU GLY GLU LEU SEQRES 25 B 466 ILE LEU PRO GLU ASN GLU PRO GLY SER SER ILE MET PRO SEQRES 26 B 466 GLY LYS VAL ASN PRO THR GLN CYS GLU ALA MET THR MET SEQRES 27 B 466 VAL ALA ALA GLN VAL MET GLY ASN HIS VAL ALA VAL THR SEQRES 28 B 466 VAL GLY GLY SER ASN GLY HIS PHE GLU LEU ASN VAL PHE SEQRES 29 B 466 LYS PRO MET MET ILE LYS ASN VAL LEU HIS SER ALA ARG SEQRES 30 B 466 LEU LEU GLY ASP ALA SER VAL SER PHE THR GLU ASN CYS SEQRES 31 B 466 VAL VAL GLY ILE GLN ALA ASN THR GLU ARG ILE ASN LYS SEQRES 32 B 466 LEU MET ASN GLU SER LEU MET LEU VAL THR ALA LEU ASN SEQRES 33 B 466 PRO HIS ILE GLY TYR ASP LYS ALA ALA LYS ILE ALA LYS SEQRES 34 B 466 THR ALA HIS LYS ASN GLY SER THR LEU LYS GLU THR ALA SEQRES 35 B 466 ILE GLU LEU GLY TYR LEU THR ALA GLU GLN PHE ASP GLU SEQRES 36 B 466 TRP VAL LYS PRO LYS ASP MET LEU GLY PRO LYS HET GOL A 601 6 HET GOL A 602 6 HET GOL B 601 6 HET TLA B 602 10 HETNAM GOL GLYCEROL HETNAM TLA L(+)-TARTARIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 TLA C4 H6 O6 FORMUL 7 HOH *579(H2 O) HELIX 1 AA1 GLY A 69 PHE A 79 1 11 HELIX 2 AA2 GLY A 83 ARG A 87 5 5 HELIX 3 AA3 PRO A 89 GLN A 108 1 20 HELIX 4 AA4 ASP A 109 GLY A 111 5 3 HELIX 5 AA5 ASP A 113 GLU A 129 1 17 HELIX 6 AA6 LEU A 132 PHE A 136 5 5 HELIX 7 AA7 GLY A 146 GLY A 166 1 21 HELIX 8 AA8 SER A 186 VAL A 206 1 21 HELIX 9 AA9 VAL A 206 PHE A 225 1 20 HELIX 10 AB1 LEU A 244 ALA A 265 1 22 HELIX 11 AB2 ALA A 265 TYR A 270 1 6 HELIX 12 AB3 GLY A 288 GLY A 302 1 15 HELIX 13 AB4 ASN A 310 ALA A 317 1 8 HELIX 14 AB5 HIS A 318 GLY A 346 1 29 HELIX 15 AB6 PRO A 374 ASN A 400 1 27 HELIX 16 AB7 PHE A 408 CYS A 434 1 27 HELIX 17 AB8 VAL A 435 ILE A 438 5 4 HELIX 18 AB9 ASN A 441 SER A 452 1 12 HELIX 19 AC1 LEU A 453 ALA A 458 5 6 HELIX 20 AC2 LEU A 459 GLY A 464 1 6 HELIX 21 AC3 GLY A 464 GLY A 479 1 16 HELIX 22 AC4 THR A 481 LEU A 489 1 9 HELIX 23 AC5 THR A 493 VAL A 501 1 9 HELIX 24 AC6 LYS A 502 MET A 506 5 5 HELIX 25 AC7 GLY B 69 PHE B 79 1 11 HELIX 26 AC8 GLY B 83 ARG B 87 5 5 HELIX 27 AC9 PRO B 89 ASN B 107 1 19 HELIX 28 AD1 GLN B 108 GLY B 111 5 4 HELIX 29 AD2 ASP B 113 GLU B 129 1 17 HELIX 30 AD3 LEU B 132 PHE B 136 5 5 HELIX 31 AD4 GLY B 146 LEU B 165 1 20 HELIX 32 AD5 SER B 186 VAL B 206 1 21 HELIX 33 AD6 VAL B 206 PHE B 225 1 20 HELIX 34 AD7 LEU B 244 TYR B 270 1 27 HELIX 35 AD8 GLY B 288 GLY B 302 1 15 HELIX 36 AD9 ASN B 310 ALA B 317 1 8 HELIX 37 AE1 HIS B 318 GLY B 346 1 29 HELIX 38 AE2 PRO B 374 ASN B 400 1 27 HELIX 39 AE3 PHE B 408 CYS B 434 1 27 HELIX 40 AE4 VAL B 435 ILE B 438 5 4 HELIX 41 AE5 ASN B 441 SER B 452 1 12 HELIX 42 AE6 LEU B 453 ALA B 458 5 6 HELIX 43 AE7 LEU B 459 GLY B 479 1 21 HELIX 44 AE8 THR B 481 LEU B 489 1 9 HELIX 45 AE9 THR B 493 VAL B 501 1 9 HELIX 46 AF1 LYS B 502 MET B 506 5 5 SHEET 1 AA1 2 PHE A 50 ASP A 55 0 SHEET 2 AA1 2 GLY A 58 PRO A 63 -1 O VAL A 62 N ARG A 51 SHEET 1 AA2 2 ILE A 229 THR A 234 0 SHEET 2 AA2 2 GLN A 237 THR A 243 -1 O LEU A 242 N LYS A 230 SHEET 1 AA3 2 GLU A 271 LEU A 272 0 SHEET 2 AA3 2 VAL A 306 THR A 307 1 O VAL A 306 N LEU A 272 SHEET 1 AA4 2 LEU A 356 ILE A 357 0 SHEET 2 AA4 2 GLN A 439 ALA A 440 -1 O GLN A 439 N ILE A 357 SHEET 1 AA5 2 PHE B 50 ASP B 55 0 SHEET 2 AA5 2 GLY B 58 PRO B 63 -1 O VAL B 62 N ARG B 51 SHEET 1 AA6 2 ILE B 229 THR B 234 0 SHEET 2 AA6 2 GLN B 237 THR B 243 -1 O LEU B 242 N LYS B 230 SHEET 1 AA7 2 GLU B 271 LEU B 272 0 SHEET 2 AA7 2 VAL B 306 THR B 307 1 O VAL B 306 N LEU B 272 SHEET 1 AA8 2 LEU B 356 ILE B 357 0 SHEET 2 AA8 2 GLN B 439 ALA B 440 -1 O GLN B 439 N ILE B 357 CISPEP 1 ILE A 173 PRO A 174 0 -0.07 CISPEP 2 GLY A 348 PRO A 349 0 11.90 CISPEP 3 ILE B 173 PRO B 174 0 -4.60 CISPEP 4 GLY B 348 PRO B 349 0 10.59 SITE 1 AC1 9 PRO A 89 PRO A 91 LYS A 414 LEU A 417 SITE 2 AC1 9 HIS A 418 HOH A 707 HOH A 729 HOH A 782 SITE 3 AC1 9 HOH A 840 SITE 1 AC2 8 THR A 234 ALA A 239 HOH A 701 HOH A 905 SITE 2 AC2 8 ASN B 188 LYS B 371 ASN B 373 HOH B 712 SITE 1 AC3 7 PRO B 89 PRO B 91 LYS B 414 HIS B 418 SITE 2 AC3 7 HOH B 708 HOH B 781 HOH B 883 SITE 1 AC4 13 THR A 147 SER A 187 ASN A 188 LYS A 371 SITE 2 AC4 13 ASN A 373 HOH A 706 HOH A 711 HOH A 759 SITE 3 AC4 13 HOH A 769 THR B 234 HIS B 235 HOH B 701 SITE 4 AC4 13 HOH B 882 CRYST1 189.880 189.880 115.380 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005266 0.003041 0.000000 0.00000 SCALE2 0.000000 0.006081 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008667 0.00000