HEADER TRANSFERASE 23-DEC-19 6VCW TITLE CRYSTAL STRUCTURE OF MEDICAGO TRUNCATULA S-ADENOSYLMETHIONINE SYNTHASE TITLE 2 3A (MTMAT3A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEDICAGO TRUNCATULA; SOURCE 3 ORGANISM_COMMON: BARREL MEDIC; SOURCE 4 ORGANISM_TAXID: 3880; SOURCE 5 TISSUE: LEAVES; SOURCE 6 GENE: 11432371, MTR_7G102120, MTRUNA17_CHR7G0264651; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS METHIONINE ADENOSYLTRANSFERASE, SAM SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.SEKULA,M.RUSZKOWSKI,Z.DAUTER REVDAT 3 11-OCT-23 6VCW 1 LINK REVDAT 2 11-MAR-20 6VCW 1 JRNL REVDAT 1 26-FEB-20 6VCW 0 JRNL AUTH B.SEKULA,M.RUSZKOWSKI,Z.DAUTER JRNL TITL S-ADENOSYLMETHIONINE SYNTHASES IN PLANTS: STRUCTURAL JRNL TITL 2 CHARACTERIZATION OF TYPE I AND II ISOENZYMES FROM JRNL TITL 3 ARABIDOPSIS THALIANA AND MEDICAGO TRUNCATULA. JRNL REF INT.J.BIOL.MACROMOL. V. 151 554 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 32057875 JRNL DOI 10.1016/J.IJBIOMAC.2020.02.100 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 129151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1305 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8367 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 965 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6075 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5678 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8220 ; 1.880 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13240 ; 1.575 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 781 ; 6.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 291 ;30.038 ;23.196 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1052 ;12.742 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;13.232 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 814 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6790 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1184 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11753 ; 3.449 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6VCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000245963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130457 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 4.790 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.67 REMARK 200 R MERGE FOR SHELL (I) : 0.76200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A1I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COCL2, 0.2 M MGCL2, 0.1 M BIS REMARK 280 -TRIS PROPANE AT PH 8.0, 6.25% PEG 3350, 6.25% PEG 4000, 6.25% REMARK 280 PEG 2000, 6.25% MMPEG 5000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.80100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.02100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.80100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.02100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ILE A 103 REMARK 465 ALA A 104 REMARK 465 GLN A 105 REMARK 465 GLY A 106 REMARK 465 VAL A 107 REMARK 465 HIS A 108 REMARK 465 GLY A 109 REMARK 465 HIS A 110 REMARK 465 LEU A 111 REMARK 465 THR A 112 REMARK 465 ALA A 390 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASP B 102 REMARK 465 ILE B 103 REMARK 465 ALA B 104 REMARK 465 GLN B 105 REMARK 465 GLY B 106 REMARK 465 VAL B 107 REMARK 465 HIS B 108 REMARK 465 GLY B 109 REMARK 465 HIS B 110 REMARK 465 LEU B 111 REMARK 465 THR B 112 REMARK 465 LYS B 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 85 129.67 -170.55 REMARK 500 THR A 258 -96.82 -111.30 REMARK 500 PRO A 275 1.81 -68.31 REMARK 500 ARG A 280 -60.94 -90.71 REMARK 500 VAL B 214 -57.10 -120.12 REMARK 500 THR B 258 -102.20 -106.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 985 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 986 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 976 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 977 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 978 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 979 DISTANCE = 7.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 279 OD1 REMARK 620 2 HOH A 512 O 78.2 REMARK 620 3 HOH A 567 O 96.3 89.8 REMARK 620 4 HOH A 570 O 164.9 88.3 90.4 REMARK 620 5 HOH A 579 O 82.0 99.7 169.6 93.8 REMARK 620 6 HOH A 841 O 100.0 168.8 79.3 94.5 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 525 O REMARK 620 2 HOH A 557 O 91.1 REMARK 620 3 HOH A 566 O 89.7 88.6 REMARK 620 4 HOH A 902 O 171.4 97.0 87.8 REMARK 620 5 HOH A 914 O 92.6 173.5 86.2 79.0 REMARK 620 6 HOH A 980 O 87.5 92.4 177.1 94.8 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 279 OD1 REMARK 620 2 HOH B 539 O 161.7 REMARK 620 3 HOH B 547 O 80.8 96.5 REMARK 620 4 HOH B 610 O 100.7 86.4 165.8 REMARK 620 5 HOH B 640 O 82.6 81.1 108.1 86.0 REMARK 620 6 HOH B 841 O 102.2 95.8 88.3 77.6 163.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 563 O REMARK 620 2 HOH B 883 O 92.8 REMARK 620 3 HOH B 915 O 93.1 87.9 REMARK 620 4 HOH B 971 O 89.8 89.6 176.3 REMARK 620 5 HOH B 974 O 93.8 172.3 87.9 94.3 REMARK 620 6 HOH B 977 O 175.1 87.7 91.8 85.3 86.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 403 DBREF 6VCW A 1 390 UNP G7L3W1 G7L3W1_MEDTR 1 390 DBREF 6VCW B 1 390 UNP G7L3W1 G7L3W1_MEDTR 1 390 SEQADV 6VCW SER A -2 UNP G7L3W1 EXPRESSION TAG SEQADV 6VCW ASN A -1 UNP G7L3W1 EXPRESSION TAG SEQADV 6VCW ALA A 0 UNP G7L3W1 EXPRESSION TAG SEQADV 6VCW SER B -2 UNP G7L3W1 EXPRESSION TAG SEQADV 6VCW ASN B -1 UNP G7L3W1 EXPRESSION TAG SEQADV 6VCW ALA B 0 UNP G7L3W1 EXPRESSION TAG SEQRES 1 A 393 SER ASN ALA MET GLU THR PHE LEU PHE THR SER GLU SER SEQRES 2 A 393 VAL ASN GLU GLY HIS PRO ASP LYS LEU CYS ASP GLN VAL SEQRES 3 A 393 SER ASP ALA ILE LEU ASP ALA CYS LEU GLN GLN ASP PRO SEQRES 4 A 393 GLU SER LYS VAL ALA CYS GLU THR CYS THR LYS THR ASN SEQRES 5 A 393 MET VAL MET VAL PHE GLY GLU ILE THR THR LYS ALA THR SEQRES 6 A 393 VAL ASN TYR GLU LYS ILE VAL ARG ASP THR CYS ARG GLY SEQRES 7 A 393 ILE GLY PHE VAL SER ALA ASP VAL GLY LEU ASP ALA ASP SEQRES 8 A 393 ASN CYS LYS VAL LEU VAL ASN ILE GLU GLN GLN SER PRO SEQRES 9 A 393 ASP ILE ALA GLN GLY VAL HIS GLY HIS LEU THR LYS LYS SEQRES 10 A 393 PRO GLU GLU ILE GLY ALA GLY ASP GLN GLY HIS MET PHE SEQRES 11 A 393 GLY TYR ALA THR ASP GLU THR PRO GLU LEU MET PRO LEU SEQRES 12 A 393 THR HIS VAL LEU ALA THR LYS LEU GLY ALA LYS LEU THR SEQRES 13 A 393 GLU VAL ARG LYS ASN LYS THR CYS ALA TRP LEU ARG PRO SEQRES 14 A 393 ASP GLY LYS THR GLN VAL THR VAL GLU TYR GLN ASN ASP SEQRES 15 A 393 ASN GLY ALA MET VAL PRO ILE ARG VAL HIS THR VAL LEU SEQRES 16 A 393 ILE SER THR GLN HIS ASP GLU THR VAL THR ASN GLU LYS SEQRES 17 A 393 ILE ALA ALA ASP LEU LYS GLU HIS VAL ILE LYS PRO VAL SEQRES 18 A 393 ILE PRO ALA LYS TYR LEU ASP ASP LYS THR ILE PHE HIS SEQRES 19 A 393 LEU ASN PRO SER GLY ARG PHE VAL ILE GLY GLY PRO HIS SEQRES 20 A 393 GLY ASP ALA GLY LEU THR GLY ARG LYS ILE ILE ILE ASP SEQRES 21 A 393 THR TYR GLY GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SEQRES 22 A 393 SER GLY LYS ASP PRO THR LYS VAL ASP ARG SER GLY ALA SEQRES 23 A 393 TYR ILE VAL ARG GLN ALA ALA LYS SER VAL VAL ALA SER SEQRES 24 A 393 GLY LEU ALA ARG ARG CYS ILE VAL GLN VAL SER TYR ALA SEQRES 25 A 393 ILE GLY VAL PRO GLU PRO LEU SER VAL PHE VAL ASP THR SEQRES 26 A 393 TYR LYS THR GLY LYS ILE PRO ASP LYS ASP ILE LEU VAL SEQRES 27 A 393 LEU ILE LYS GLU HIS PHE ASP PHE ARG PRO GLY MET ILE SEQRES 28 A 393 SER ASN ASN LEU ASP LEU LYS ARG GLY GLY ASN PHE ARG SEQRES 29 A 393 TYR GLN LYS THR ALA ALA TYR GLY HIS PHE GLY ARG ASP SEQRES 30 A 393 ASP PRO ASP PHE THR TRP GLU THR VAL LYS ILE LEU LYS SEQRES 31 A 393 PRO LYS ALA SEQRES 1 B 393 SER ASN ALA MET GLU THR PHE LEU PHE THR SER GLU SER SEQRES 2 B 393 VAL ASN GLU GLY HIS PRO ASP LYS LEU CYS ASP GLN VAL SEQRES 3 B 393 SER ASP ALA ILE LEU ASP ALA CYS LEU GLN GLN ASP PRO SEQRES 4 B 393 GLU SER LYS VAL ALA CYS GLU THR CYS THR LYS THR ASN SEQRES 5 B 393 MET VAL MET VAL PHE GLY GLU ILE THR THR LYS ALA THR SEQRES 6 B 393 VAL ASN TYR GLU LYS ILE VAL ARG ASP THR CYS ARG GLY SEQRES 7 B 393 ILE GLY PHE VAL SER ALA ASP VAL GLY LEU ASP ALA ASP SEQRES 8 B 393 ASN CYS LYS VAL LEU VAL ASN ILE GLU GLN GLN SER PRO SEQRES 9 B 393 ASP ILE ALA GLN GLY VAL HIS GLY HIS LEU THR LYS LYS SEQRES 10 B 393 PRO GLU GLU ILE GLY ALA GLY ASP GLN GLY HIS MET PHE SEQRES 11 B 393 GLY TYR ALA THR ASP GLU THR PRO GLU LEU MET PRO LEU SEQRES 12 B 393 THR HIS VAL LEU ALA THR LYS LEU GLY ALA LYS LEU THR SEQRES 13 B 393 GLU VAL ARG LYS ASN LYS THR CYS ALA TRP LEU ARG PRO SEQRES 14 B 393 ASP GLY LYS THR GLN VAL THR VAL GLU TYR GLN ASN ASP SEQRES 15 B 393 ASN GLY ALA MET VAL PRO ILE ARG VAL HIS THR VAL LEU SEQRES 16 B 393 ILE SER THR GLN HIS ASP GLU THR VAL THR ASN GLU LYS SEQRES 17 B 393 ILE ALA ALA ASP LEU LYS GLU HIS VAL ILE LYS PRO VAL SEQRES 18 B 393 ILE PRO ALA LYS TYR LEU ASP ASP LYS THR ILE PHE HIS SEQRES 19 B 393 LEU ASN PRO SER GLY ARG PHE VAL ILE GLY GLY PRO HIS SEQRES 20 B 393 GLY ASP ALA GLY LEU THR GLY ARG LYS ILE ILE ILE ASP SEQRES 21 B 393 THR TYR GLY GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SEQRES 22 B 393 SER GLY LYS ASP PRO THR LYS VAL ASP ARG SER GLY ALA SEQRES 23 B 393 TYR ILE VAL ARG GLN ALA ALA LYS SER VAL VAL ALA SER SEQRES 24 B 393 GLY LEU ALA ARG ARG CYS ILE VAL GLN VAL SER TYR ALA SEQRES 25 B 393 ILE GLY VAL PRO GLU PRO LEU SER VAL PHE VAL ASP THR SEQRES 26 B 393 TYR LYS THR GLY LYS ILE PRO ASP LYS ASP ILE LEU VAL SEQRES 27 B 393 LEU ILE LYS GLU HIS PHE ASP PHE ARG PRO GLY MET ILE SEQRES 28 B 393 SER ASN ASN LEU ASP LEU LYS ARG GLY GLY ASN PHE ARG SEQRES 29 B 393 TYR GLN LYS THR ALA ALA TYR GLY HIS PHE GLY ARG ASP SEQRES 30 B 393 ASP PRO ASP PHE THR TRP GLU THR VAL LYS ILE LEU LYS SEQRES 31 B 393 PRO LYS ALA HET MG A 401 1 HET MG A 402 1 HET CL A 403 1 HET EDO A 404 4 HET MG B 401 1 HET MG B 402 1 HET CL B 403 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG 4(MG 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 EDO C2 H6 O2 FORMUL 10 HOH *965(H2 O) HELIX 1 AA1 HIS A 15 ASP A 35 1 21 HELIX 2 AA2 ASN A 64 GLY A 77 1 14 HELIX 3 AA3 ALA A 81 GLY A 84 5 4 HELIX 4 AA4 LYS A 114 ILE A 118 5 5 HELIX 5 AA5 PRO A 139 ASN A 158 1 20 HELIX 6 AA6 THR A 202 VAL A 214 1 13 HELIX 7 AA7 VAL A 214 ILE A 219 1 6 HELIX 8 AA8 PRO A 220 LEU A 224 5 5 HELIX 9 AA9 LYS A 253 THR A 258 1 6 HELIX 10 AB1 LYS A 277 SER A 296 1 20 HELIX 11 AB2 PRO A 329 PHE A 341 1 13 HELIX 12 AB3 ARG A 344 LEU A 352 1 9 HELIX 13 AB4 TYR A 362 ALA A 367 5 6 HELIX 14 AB5 PHE A 378 THR A 382 5 5 HELIX 15 AB6 HIS B 15 ASP B 35 1 21 HELIX 16 AB7 ASN B 64 GLY B 77 1 14 HELIX 17 AB8 LYS B 114 ILE B 118 5 5 HELIX 18 AB9 PRO B 139 ASN B 158 1 20 HELIX 19 AC1 THR B 202 VAL B 214 1 13 HELIX 20 AC2 VAL B 214 ILE B 219 1 6 HELIX 21 AC3 PRO B 220 LEU B 224 5 5 HELIX 22 AC4 LYS B 253 THR B 258 1 6 HELIX 23 AC5 LYS B 277 SER B 296 1 20 HELIX 24 AC6 PRO B 329 PHE B 341 1 13 HELIX 25 AC7 ARG B 344 LEU B 352 1 9 HELIX 26 AC8 TYR B 362 ALA B 367 5 6 HELIX 27 AC9 PHE B 378 THR B 382 5 5 SHEET 1 AA1 4 PHE A 4 VAL A 11 0 SHEET 2 AA1 4 LEU A 164 ASP A 179 -1 O TYR A 176 N PHE A 4 SHEET 3 AA1 4 ALA A 182 HIS A 197 -1 O ILE A 186 N GLU A 175 SHEET 4 AA1 4 ILE A 229 LEU A 232 1 O HIS A 231 N VAL A 191 SHEET 1 AA2 4 LYS A 91 GLN A 99 0 SHEET 2 AA2 4 MET A 50 THR A 58 1 N GLY A 55 O GLU A 97 SHEET 3 AA2 4 LYS A 39 LYS A 47 -1 N CYS A 45 O MET A 52 SHEET 4 AA2 4 ALA A 247 LEU A 249 -1 O GLY A 248 N THR A 46 SHEET 1 AA3 2 VAL A 79 SER A 80 0 SHEET 2 AA3 2 LEU A 85 ASP A 86 -1 N LEU A 85 O SER A 80 SHEET 1 AA4 3 GLY A 124 THR A 131 0 SHEET 2 AA4 3 ARG A 301 TYR A 308 -1 O TYR A 308 N GLY A 124 SHEET 3 AA4 3 SER A 317 ASP A 321 -1 O PHE A 319 N GLN A 305 SHEET 1 AA5 4 PHE B 4 VAL B 11 0 SHEET 2 AA5 4 LEU B 164 ASP B 179 -1 O TYR B 176 N PHE B 4 SHEET 3 AA5 4 ALA B 182 HIS B 197 -1 O ILE B 186 N GLU B 175 SHEET 4 AA5 4 ILE B 229 LEU B 232 1 O HIS B 231 N VAL B 191 SHEET 1 AA6 4 LYS B 91 GLN B 99 0 SHEET 2 AA6 4 MET B 50 THR B 58 1 N VAL B 53 O ASN B 95 SHEET 3 AA6 4 LYS B 39 LYS B 47 -1 N LYS B 39 O THR B 58 SHEET 4 AA6 4 ALA B 247 LEU B 249 -1 O GLY B 248 N THR B 46 SHEET 1 AA7 2 VAL B 79 SER B 80 0 SHEET 2 AA7 2 LEU B 85 ASP B 86 -1 O LEU B 85 N SER B 80 SHEET 1 AA8 3 GLY B 124 THR B 131 0 SHEET 2 AA8 3 ARG B 301 TYR B 308 -1 O TYR B 308 N GLY B 124 SHEET 3 AA8 3 SER B 317 ASP B 321 -1 O PHE B 319 N GLN B 305 LINK OD1 ASP A 279 MG MG A 401 1555 1555 2.08 LINK MG MG A 401 O HOH A 512 1555 1555 2.16 LINK MG MG A 401 O HOH A 567 1555 1555 2.10 LINK MG MG A 401 O HOH A 570 1555 1555 2.08 LINK MG MG A 401 O HOH A 579 1555 1555 2.01 LINK MG MG A 401 O HOH A 841 1555 1555 2.12 LINK MG MG A 402 O HOH A 525 1555 1555 2.11 LINK MG MG A 402 O HOH A 557 1555 1555 2.09 LINK MG MG A 402 O HOH A 566 1555 1555 2.07 LINK MG MG A 402 O HOH A 902 1555 1555 2.10 LINK MG MG A 402 O HOH A 914 1555 1555 2.04 LINK MG MG A 402 O HOH A 980 1555 1555 2.09 LINK OD1 ASP B 279 MG MG B 401 1555 1555 2.05 LINK MG MG B 401 O HOH B 539 1555 1555 2.11 LINK MG MG B 401 O HOH B 547 1555 1555 2.01 LINK MG MG B 401 O HOH B 610 1555 1555 2.10 LINK MG MG B 401 O HOH B 640 1555 1555 2.11 LINK MG MG B 401 O HOH B 841 1555 1555 2.12 LINK MG MG B 402 O HOH B 563 1555 1555 2.08 LINK MG MG B 402 O HOH B 883 1555 1555 2.05 LINK MG MG B 402 O HOH B 915 1555 1555 2.00 LINK MG MG B 402 O HOH B 971 1555 1555 2.05 LINK MG MG B 402 O HOH B 974 1555 1555 2.09 LINK MG MG B 402 O HOH B 977 1555 1555 2.12 SITE 1 AC1 6 ASP A 279 HOH A 512 HOH A 567 HOH A 570 SITE 2 AC1 6 HOH A 579 HOH A 841 SITE 1 AC2 6 HOH A 525 HOH A 557 HOH A 566 HOH A 902 SITE 2 AC2 6 HOH A 914 HOH A 980 SITE 1 AC3 3 ARG A 70 VAL A 92 LYS A 331 SITE 1 AC4 9 GLY A 121 ASP A 122 THR A 276 LYS A 277 SITE 2 AC4 9 VAL A 278 HOH A 501 HOH A 507 HOH A 508 SITE 3 AC4 9 HOH A 799 SITE 1 AC5 6 ASP B 279 HOH B 539 HOH B 547 HOH B 610 SITE 2 AC5 6 HOH B 640 HOH B 841 SITE 1 AC6 6 HOH B 563 HOH B 883 HOH B 915 HOH B 971 SITE 2 AC6 6 HOH B 974 HOH B 977 SITE 1 AC7 2 TYR B 65 GLU B 66 CRYST1 111.602 62.042 102.284 90.00 90.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008960 0.000000 0.000004 0.00000 SCALE2 0.000000 0.016118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009777 0.00000