HEADER TRANSFERASE 23-DEC-19 6VCY TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA S-ADENOSYLMETHIONINE TITLE 2 SYNTHASE 1 (ATMAT1) IN COMPLEX WITH 5'-METHYLTHIOADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADOMET SYNTHASE 1,METHIONINE ADENOSYLTRANSFERASE 1,MAT 1; COMPND 5 EC: 2.5.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 TISSUE: LEAVES; SOURCE 6 GENE: SAM1, AT1G02500, T14P4.17, T14P4_22; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS METHIONINE ADENOSYLTRANSFERASE, SAM SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.SEKULA,M.RUSZKOWSKI,Z.DAUTER REVDAT 3 11-OCT-23 6VCY 1 REMARK REVDAT 2 11-MAR-20 6VCY 1 JRNL REVDAT 1 26-FEB-20 6VCY 0 JRNL AUTH B.SEKULA,M.RUSZKOWSKI,Z.DAUTER JRNL TITL S-ADENOSYLMETHIONINE SYNTHASES IN PLANTS: STRUCTURAL JRNL TITL 2 CHARACTERIZATION OF TYPE I AND II ISOENZYMES FROM JRNL TITL 3 ARABIDOPSIS THALIANA AND MEDICAGO TRUNCATULA. JRNL REF INT.J.BIOL.MACROMOL. V. 151 554 2020 JRNL REFN ISSN 0141-8130 JRNL PMID 32057875 JRNL DOI 10.1016/J.IJBIOMAC.2020.02.100 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 36566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2606 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 1.81000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3105 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2887 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4211 ; 1.922 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6713 ; 1.507 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 7.358 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;31.854 ;22.914 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;15.201 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.051 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3450 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 620 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 8.767 12.248 36.888 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.0267 REMARK 3 T33: 0.0373 T12: -0.0095 REMARK 3 T13: -0.0004 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.0893 L22: 0.2804 REMARK 3 L33: 0.2820 L12: -0.1481 REMARK 3 L13: 0.0142 L23: -0.1183 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0049 S13: 0.0065 REMARK 3 S21: 0.0054 S22: -0.0390 S23: -0.0271 REMARK 3 S31: 0.0225 S32: 0.0707 S33: 0.0446 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 8.742 8.103 38.180 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0337 REMARK 3 T33: 0.0286 T12: 0.0068 REMARK 3 T13: -0.0015 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.0111 L22: 0.5503 REMARK 3 L33: 0.1933 L12: 0.0673 REMARK 3 L13: -0.0249 L23: -0.1896 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: -0.0057 S13: -0.0113 REMARK 3 S21: 0.0456 S22: -0.0259 S23: -0.0215 REMARK 3 S31: 0.0320 S32: 0.0548 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 20.368 29.288 23.258 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0331 REMARK 3 T33: 0.0548 T12: -0.0160 REMARK 3 T13: 0.0218 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.2372 L22: 0.2930 REMARK 3 L33: 1.2593 L12: 0.1659 REMARK 3 L13: 0.2515 L23: 0.0748 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: 0.0284 S13: 0.0456 REMARK 3 S21: -0.0133 S22: -0.0112 S23: -0.0457 REMARK 3 S31: -0.0689 S32: 0.1040 S33: -0.0073 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 5.749 6.191 21.410 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.0296 REMARK 3 T33: 0.0239 T12: -0.0123 REMARK 3 T13: 0.0038 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.1245 L22: 0.2455 REMARK 3 L33: 0.2105 L12: 0.0466 REMARK 3 L13: -0.1499 L23: -0.0208 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: 0.0127 S13: 0.0025 REMARK 3 S21: -0.0117 S22: 0.0312 S23: 0.0227 REMARK 3 S31: 0.0503 S32: 0.0128 S33: 0.0126 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 367 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): 14.910 3.693 17.282 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.0470 REMARK 3 T33: 0.0233 T12: 0.0461 REMARK 3 T13: 0.0134 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.1123 L22: 0.2937 REMARK 3 L33: 0.4223 L12: 0.1785 REMARK 3 L13: -0.2087 L23: -0.3484 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: -0.0298 S13: -0.0124 REMARK 3 S21: -0.0680 S22: -0.0370 S23: -0.0319 REMARK 3 S31: 0.1002 S32: 0.0801 S33: 0.0527 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6VCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37699 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 49.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.75 REMARK 200 R MERGE FOR SHELL (I) : 0.77400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M (NH4)2SO4, 0.08 M BIS-TRIS, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.14000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.22500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.57800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.22500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.14000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.57800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.14000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.57800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.22500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.57800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.14000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -260.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 34.57800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 524 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 614 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 808 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 832 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 HIS A 108 REMARK 465 GLY A 109 REMARK 465 HIS A 110 REMARK 465 PHE A 111 REMARK 465 THR A 112 REMARK 465 PRO A 391 REMARK 465 GLN A 392 REMARK 465 ALA A 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 85 134.03 -170.63 REMARK 500 ASP A 246 96.75 -163.54 REMARK 500 THR A 258 -97.07 -120.93 REMARK 500 ASP A 375 128.89 -39.47 REMARK 500 TRP A 388 -76.52 -144.70 REMARK 500 ASP A 389 153.27 76.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD2 REMARK 620 2 SO4 A 401 O3 84.0 REMARK 620 3 SO4 A 402 O3 77.7 97.5 REMARK 620 4 SO4 A 402 O4 121.6 77.3 51.4 REMARK 620 5 HOH A 507 O 174.4 98.6 97.0 54.7 REMARK 620 6 HOH A 545 O 88.2 164.4 94.0 118.3 90.4 REMARK 620 7 HOH A 590 O 90.0 84.3 167.3 140.7 95.1 82.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MTA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 413 DBREF 6VCY A 1 393 UNP P23686 METK1_ARATH 1 393 SEQADV 6VCY SER A -2 UNP P23686 EXPRESSION TAG SEQADV 6VCY ASN A -1 UNP P23686 EXPRESSION TAG SEQADV 6VCY ALA A 0 UNP P23686 EXPRESSION TAG SEQRES 1 A 396 SER ASN ALA MET GLU THR PHE LEU PHE THR SER GLU SER SEQRES 2 A 396 VAL ASN GLU GLY HIS PRO ASP LYS LEU CYS ASP GLN ILE SEQRES 3 A 396 SER ASP ALA VAL LEU ASP ALA CYS LEU GLU GLN ASP PRO SEQRES 4 A 396 ASP SER LYS VAL ALA CYS GLU THR CYS THR LYS THR ASN SEQRES 5 A 396 MET VAL MET VAL PHE GLY GLU ILE THR THR LYS ALA THR SEQRES 6 A 396 VAL ASP TYR GLU LYS ILE VAL ARG ASP THR CYS ARG ALA SEQRES 7 A 396 ILE GLY PHE VAL SER ASP ASP VAL GLY LEU ASP ALA ASP SEQRES 8 A 396 LYS CYS LYS VAL LEU VAL ASN ILE GLU GLN GLN SER PRO SEQRES 9 A 396 ASP ILE ALA GLN GLY VAL HIS GLY HIS PHE THR LYS CYS SEQRES 10 A 396 PRO GLU GLU ILE GLY ALA GLY ASP GLN GLY HIS MET PHE SEQRES 11 A 396 GLY TYR ALA THR ASP GLU THR PRO GLU LEU MET PRO LEU SEQRES 12 A 396 SER HIS VAL LEU ALA THR LYS LEU GLY ALA ARG LEU THR SEQRES 13 A 396 GLU VAL ARG LYS ASN GLY THR CYS ALA TRP LEU ARG PRO SEQRES 14 A 396 ASP GLY LYS THR GLN VAL THR VAL GLU TYR TYR ASN ASP SEQRES 15 A 396 LYS GLY ALA MET VAL PRO ILE ARG VAL HIS THR VAL LEU SEQRES 16 A 396 ILE SER THR GLN HIS ASP GLU THR VAL THR ASN ASP GLU SEQRES 17 A 396 ILE ALA ARG ASP LEU LYS GLU HIS VAL ILE LYS PRO VAL SEQRES 18 A 396 ILE PRO GLU LYS TYR LEU ASP GLU LYS THR ILE PHE HIS SEQRES 19 A 396 LEU ASN PRO SER GLY ARG PHE VAL ILE GLY GLY PRO HIS SEQRES 20 A 396 GLY ASP ALA GLY LEU THR GLY ARG LYS ILE ILE ILE ASP SEQRES 21 A 396 THR TYR GLY GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SEQRES 22 A 396 SER GLY LYS ASP PRO THR LYS VAL ASP ARG SER GLY ALA SEQRES 23 A 396 TYR ILE VAL ARG GLN ALA ALA LYS SER VAL VAL ALA ASN SEQRES 24 A 396 GLY MET ALA ARG ARG ALA LEU VAL GLN VAL SER TYR ALA SEQRES 25 A 396 ILE GLY VAL PRO GLU PRO LEU SER VAL PHE VAL ASP THR SEQRES 26 A 396 TYR GLU THR GLY LEU ILE PRO ASP LYS GLU ILE LEU LYS SEQRES 27 A 396 ILE VAL LYS GLU SER PHE ASP PHE ARG PRO GLY MET MET SEQRES 28 A 396 THR ILE ASN LEU ASP LEU LYS ARG GLY GLY ASN GLY ARG SEQRES 29 A 396 PHE LEU LYS THR ALA ALA TYR GLY HIS PHE GLY ARG ASP SEQRES 30 A 396 ASP PRO ASP PHE THR TRP GLU VAL VAL LYS PRO LEU LYS SEQRES 31 A 396 TRP ASP LYS PRO GLN ALA HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET MG A 404 1 HET GOL A 405 6 HET MTA A 406 20 HET CL A 407 1 HET CL A 408 1 HET CL A 409 1 HET CL A 410 1 HET CL A 411 1 HET CL A 412 1 HET CL A 413 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 MG MG 2+ FORMUL 6 GOL C3 H8 O3 FORMUL 7 MTA C11 H15 N5 O3 S FORMUL 8 CL 7(CL 1-) FORMUL 15 HOH *352(H2 O) HELIX 1 AA1 HIS A 15 ASP A 35 1 21 HELIX 2 AA2 ASP A 64 GLY A 77 1 14 HELIX 3 AA3 PRO A 139 ASN A 158 1 20 HELIX 4 AA4 THR A 202 VAL A 214 1 13 HELIX 5 AA5 VAL A 214 ILE A 219 1 6 HELIX 6 AA6 PRO A 220 LEU A 224 5 5 HELIX 7 AA7 LYS A 277 ASN A 296 1 20 HELIX 8 AA8 PRO A 329 PHE A 341 1 13 HELIX 9 AA9 ARG A 344 LEU A 352 1 9 HELIX 10 AB1 GLY A 360 ALA A 366 1 7 HELIX 11 AB2 PHE A 378 VAL A 382 5 5 SHEET 1 AA1 4 PHE A 4 VAL A 11 0 SHEET 2 AA1 4 LEU A 164 ASP A 179 -1 O VAL A 174 N PHE A 6 SHEET 3 AA1 4 ALA A 182 HIS A 197 -1 O LEU A 192 N GLN A 171 SHEET 4 AA1 4 ILE A 229 LEU A 232 1 O ILE A 229 N VAL A 191 SHEET 1 AA2 4 LYS A 91 GLN A 99 0 SHEET 2 AA2 4 MET A 50 THR A 58 1 N VAL A 53 O ASN A 95 SHEET 3 AA2 4 LYS A 39 LYS A 47 -1 N CYS A 45 O MET A 52 SHEET 4 AA2 4 GLY A 248 LEU A 249 -1 O GLY A 248 N THR A 46 SHEET 1 AA3 2 VAL A 79 SER A 80 0 SHEET 2 AA3 2 LEU A 85 ASP A 86 -1 O LEU A 85 N SER A 80 SHEET 1 AA4 3 GLY A 124 THR A 131 0 SHEET 2 AA4 3 ARG A 301 TYR A 308 -1 O VAL A 304 N GLY A 128 SHEET 3 AA4 3 SER A 317 ASP A 321 -1 O ASP A 321 N LEU A 303 SSBOND 1 CYS A 114 CYS A 114 1555 6545 2.76 LINK OD2 ASP A 17 MG MG A 404 1555 1555 2.27 LINK O3 SO4 A 401 MG MG A 404 1555 1555 2.02 LINK O3 SO4 A 402 MG MG A 404 1555 1555 2.26 LINK O4 SO4 A 402 MG MG A 404 1555 1555 2.92 LINK MG MG A 404 O HOH A 507 1555 1555 1.99 LINK MG MG A 404 O HOH A 545 1555 1555 2.02 LINK MG MG A 404 O HOH A 590 1555 1555 2.18 SITE 1 AC1 11 HIS A 15 ASP A 17 ASP A 122 LYS A 169 SITE 2 AC1 11 LYS A 253 SO4 A 402 MG A 404 MTA A 406 SITE 3 AC1 11 HOH A 507 HOH A 542 HOH A 590 SITE 1 AC2 9 ASP A 17 ARG A 252 LYS A 253 ALA A 269 SITE 2 AC2 9 LYS A 273 SO4 A 401 MG A 404 HOH A 506 SITE 3 AC2 9 HOH A 507 SITE 1 AC3 4 PRO A 220 GLU A 221 HOH A 520 HOH A 668 SITE 1 AC4 6 ASP A 17 SO4 A 401 SO4 A 402 HOH A 507 SITE 2 AC4 6 HOH A 545 HOH A 590 SITE 1 AC5 2 ASP A 321 HOH A 578 SITE 1 AC6 13 HIS A 15 GLY A 121 ASP A 122 ASP A 167 SITE 2 AC6 13 SER A 194 SER A 235 ARG A 237 PHE A 238 SITE 3 AC6 13 ASP A 246 SO4 A 401 HOH A 531 HOH A 593 SITE 4 AC6 13 HOH A 732 SITE 1 AC7 1 ARG A 373 SITE 1 AC8 2 VAL A 239 ILE A 240 SITE 1 AC9 5 ASP A 342 LYS A 384 HOH A 609 HOH A 611 SITE 2 AC9 5 HOH A 790 SITE 1 AD1 5 GLY A 121 ASP A 122 LYS A 277 VAL A 278 SITE 2 AD1 5 HOH A 719 SITE 1 AD2 4 ARG A 70 LYS A 91 VAL A 92 HOH A 716 SITE 1 AD3 2 ASP A 198 GLU A 199 SITE 1 AD4 1 ASP A 102 CRYST1 58.280 69.156 210.450 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004752 0.00000