HEADER TRANSFERASE/DNA 24-DEC-19 6VDD TITLE POL DOMAIN OF POL1 FROM M. SMEGMATIS COMPLEX WITH DNA PRIMER-TEMPLATE TITLE 2 AND DNTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 304-908; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A*(DCT))-3'); COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(P*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'); COMPND 17 CHAIN: F; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: POLA, MSMEI_3749; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS MYCOBACTERIA, DNA POLYMERASE, APOENZYME, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SHUMAN,Y.GOLDGUR,S.GHOSH REVDAT 4 06-MAR-24 6VDD 1 LINK REVDAT 3 15-APR-20 6VDD 1 JRNL REVDAT 2 19-FEB-20 6VDD 1 JRNL REVDAT 1 12-FEB-20 6VDD 0 JRNL AUTH S.GHOSH,Y.GOLDGUR,S.SHUMAN JRNL TITL MYCOBACTERIAL DNA POLYMERASE I: ACTIVITIES AND CRYSTAL JRNL TITL 2 STRUCTURES OF THE POL DOMAIN AS APOENZYME AND IN COMPLEX JRNL TITL 3 WITH A DNA PRIMER-TEMPLATE AND OF THE FULL-LENGTH JRNL TITL 4 FEN/EXO-POL ENZYME. JRNL REF NUCLEIC ACIDS RES. V. 48 3165 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32034423 JRNL DOI 10.1093/NAR/GKAA075 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 104226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5000 - 4.5700 1.00 7646 149 0.1605 0.1897 REMARK 3 2 4.5700 - 3.6300 1.00 7404 146 0.1494 0.2111 REMARK 3 3 3.6300 - 3.1700 1.00 7352 144 0.1849 0.2490 REMARK 3 4 3.1700 - 2.8800 1.00 7350 143 0.2116 0.2467 REMARK 3 5 2.8800 - 2.6800 1.00 7284 142 0.2172 0.2706 REMARK 3 6 2.6800 - 2.5200 1.00 7327 144 0.2190 0.2572 REMARK 3 7 2.5200 - 2.3900 1.00 7261 142 0.2156 0.2405 REMARK 3 8 2.3900 - 2.2900 1.00 7268 142 0.2118 0.2572 REMARK 3 9 2.2900 - 2.2000 1.00 7296 143 0.2173 0.2775 REMARK 3 10 2.2000 - 2.1200 1.00 7263 142 0.2254 0.2704 REMARK 3 11 2.1200 - 2.0600 1.00 7224 142 0.2281 0.3040 REMARK 3 12 2.0600 - 2.0000 1.00 7239 141 0.2456 0.2660 REMARK 3 13 2.0000 - 1.9500 1.00 7235 142 0.2647 0.2927 REMARK 3 14 1.9500 - 1.9000 0.98 7077 138 0.2883 0.3037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 10035 REMARK 3 ANGLE : 1.048 13802 REMARK 3 CHIRALITY : 0.054 1566 REMARK 3 PLANARITY : 0.006 1637 REMARK 3 DIHEDRAL : 10.018 5882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 475 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.4158 -52.7645 -20.4385 REMARK 3 T TENSOR REMARK 3 T11: 0.3002 T22: 0.4352 REMARK 3 T33: 0.2747 T12: -0.1570 REMARK 3 T13: -0.0938 T23: 0.1038 REMARK 3 L TENSOR REMARK 3 L11: 3.3192 L22: 2.0414 REMARK 3 L33: 3.2172 L12: 1.0869 REMARK 3 L13: -0.7404 L23: 0.4313 REMARK 3 S TENSOR REMARK 3 S11: 0.3014 S12: -0.1805 S13: -0.2006 REMARK 3 S21: 0.1342 S22: -0.0340 S23: 0.1922 REMARK 3 S31: 0.4460 S32: -0.8365 S33: -0.2141 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 476 THROUGH 670 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1328 -21.8228 -17.6049 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2285 REMARK 3 T33: 0.2713 T12: -0.0241 REMARK 3 T13: 0.0997 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.2481 L22: 1.1945 REMARK 3 L33: 0.9429 L12: -0.0581 REMARK 3 L13: 0.2797 L23: 0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: -0.0462 S13: 0.3405 REMARK 3 S21: 0.0520 S22: 0.0548 S23: -0.0982 REMARK 3 S31: -0.2982 S32: -0.1010 S33: -0.0904 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 671 THROUGH 908 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4625 -31.3684 -20.5786 REMARK 3 T TENSOR REMARK 3 T11: 0.3502 T22: 0.2557 REMARK 3 T33: 0.2672 T12: -0.1170 REMARK 3 T13: 0.0781 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.2758 L22: 1.0287 REMARK 3 L33: 2.1239 L12: 0.2163 REMARK 3 L13: 0.6090 L23: 0.0873 REMARK 3 S TENSOR REMARK 3 S11: -0.1687 S12: 0.2147 S13: -0.0004 REMARK 3 S21: -0.1922 S22: 0.1182 S23: -0.3680 REMARK 3 S31: -0.4954 S32: 0.3354 S33: 0.0537 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4025 -18.7963 -25.1373 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.4212 REMARK 3 T33: 0.4025 T12: -0.0296 REMARK 3 T13: 0.0928 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 4.6821 L22: 3.9912 REMARK 3 L33: 5.4474 L12: -2.2194 REMARK 3 L13: 1.8616 L23: -1.2470 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: 0.0733 S13: -0.3136 REMARK 3 S21: -0.0404 S22: 0.1531 S23: 0.5741 REMARK 3 S31: -0.3341 S32: -0.8201 S33: -0.2007 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4036 -18.4166 -27.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.4039 T22: 0.3670 REMARK 3 T33: 0.2482 T12: -0.0477 REMARK 3 T13: -0.0403 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.6214 L22: 5.6056 REMARK 3 L33: 2.5632 L12: -1.1860 REMARK 3 L13: -0.5284 L23: -0.0763 REMARK 3 S TENSOR REMARK 3 S11: -0.2446 S12: 0.5359 S13: 0.0964 REMARK 3 S21: -0.5066 S22: 0.1340 S23: 0.4964 REMARK 3 S31: -0.0796 S32: -0.3777 S33: 0.1004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 322 THROUGH 498 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5848 -68.3367 -23.7834 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.3658 REMARK 3 T33: 0.4128 T12: -0.1032 REMARK 3 T13: 0.1201 T23: -0.0954 REMARK 3 L TENSOR REMARK 3 L11: 3.8914 L22: 2.3980 REMARK 3 L33: 2.4836 L12: 1.4843 REMARK 3 L13: 0.5310 L23: 0.2189 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: -0.0724 S13: 0.2468 REMARK 3 S21: -0.0330 S22: 0.0575 S23: -0.3873 REMARK 3 S31: -0.2615 S32: 0.5508 S33: -0.1701 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 499 THROUGH 707 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9611-100.5312 -15.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.2413 REMARK 3 T33: 0.2932 T12: -0.0626 REMARK 3 T13: -0.0281 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.1053 L22: 1.5327 REMARK 3 L33: 0.9324 L12: -0.6997 REMARK 3 L13: -0.8941 L23: 0.4181 REMARK 3 S TENSOR REMARK 3 S11: -0.1656 S12: -0.0444 S13: -0.4167 REMARK 3 S21: 0.0854 S22: 0.0384 S23: 0.1672 REMARK 3 S31: 0.2775 S32: 0.0870 S33: 0.0938 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 708 THROUGH 811 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.4386 -96.2955 -28.5305 REMARK 3 T TENSOR REMARK 3 T11: 0.6928 T22: 0.4137 REMARK 3 T33: 0.3480 T12: -0.0943 REMARK 3 T13: -0.0715 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.6424 L22: 2.9040 REMARK 3 L33: 2.4033 L12: 0.4542 REMARK 3 L13: -1.5042 L23: 0.1282 REMARK 3 S TENSOR REMARK 3 S11: -0.5033 S12: 0.2998 S13: -0.1938 REMARK 3 S21: -0.2248 S22: 0.1988 S23: 0.4082 REMARK 3 S31: 0.9469 S32: -0.2720 S33: 0.3100 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 812 THROUGH 908 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.3509 -83.4344 -11.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.2046 REMARK 3 T33: 0.2561 T12: -0.0495 REMARK 3 T13: 0.0058 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.3676 L22: 1.5251 REMARK 3 L33: 3.1628 L12: -0.0710 REMARK 3 L13: 0.4884 L23: 0.3483 REMARK 3 S TENSOR REMARK 3 S11: 0.0548 S12: -0.1854 S13: 0.1053 REMARK 3 S21: -0.0488 S22: 0.0319 S23: 0.1938 REMARK 3 S31: 0.0273 S32: -0.1177 S33: -0.0777 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2791-102.1803 -26.0161 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.4389 REMARK 3 T33: 0.4533 T12: -0.1438 REMARK 3 T13: -0.0516 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 5.9786 L22: 3.5433 REMARK 3 L33: 4.9441 L12: -3.9606 REMARK 3 L13: -1.9911 L23: 1.9252 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.6885 S13: 0.6842 REMARK 3 S21: -0.1447 S22: 0.0432 S23: -0.3460 REMARK 3 S31: 0.0672 S32: 0.4697 S33: -0.0414 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 8 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0780-102.3191 -27.5545 REMARK 3 T TENSOR REMARK 3 T11: 0.4867 T22: 0.3551 REMARK 3 T33: 0.3451 T12: -0.1234 REMARK 3 T13: 0.1226 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.2253 L22: 6.9110 REMARK 3 L33: 4.9237 L12: -1.1003 REMARK 3 L13: 2.8460 L23: -0.3201 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: 0.1970 S13: 0.3768 REMARK 3 S21: -0.9924 S22: 0.1557 S23: -0.8590 REMARK 3 S31: 0.2145 S32: 0.4059 S33: -0.0434 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M MES, REMARK 280 25% PEG4000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.64450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.64450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.33200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 116.90250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.33200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 116.90250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.64450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.33200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 116.90250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.64450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.33200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 116.90250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 304 REMARK 465 GLU A 305 REMARK 465 THR A 306 REMARK 465 LEU A 307 REMARK 465 VAL A 308 REMARK 465 ALA A 309 REMARK 465 VAL A 310 REMARK 465 GLU A 311 REMARK 465 PRO A 312 REMARK 465 GLU A 313 REMARK 465 VAL A 314 REMARK 465 GLU A 315 REMARK 465 HIS A 316 REMARK 465 GLY A 317 REMARK 465 PHE A 318 REMARK 465 ASP A 319 REMARK 465 VAL A 320 REMARK 465 ALA A 453 REMARK 465 GLU A 454 REMARK 465 THR A 455 REMARK 465 PRO A 456 REMARK 465 GLU A 457 REMARK 465 GLN A 458 REMARK 465 GLN A 459 REMARK 465 GLN A 460 REMARK 465 LEU A 461 REMARK 465 SER A 462 REMARK 465 LEU A 463 REMARK 465 LEU A 464 REMARK 465 ASP A 465 REMARK 465 ASP A 466 REMARK 465 SER A 467 REMARK 465 ASP A 468 REMARK 465 GLY A 469 REMARK 465 VAL A 470 REMARK 465 ASP A 471 REMARK 465 GLU A 472 REMARK 465 GLN A 473 REMARK 465 PHE D 304 REMARK 465 GLU D 305 REMARK 465 THR D 306 REMARK 465 LEU D 307 REMARK 465 VAL D 308 REMARK 465 ALA D 309 REMARK 465 VAL D 310 REMARK 465 GLU D 311 REMARK 465 PRO D 312 REMARK 465 GLU D 313 REMARK 465 VAL D 314 REMARK 465 GLU D 315 REMARK 465 HIS D 316 REMARK 465 GLY D 317 REMARK 465 PHE D 318 REMARK 465 ASP D 319 REMARK 465 VAL D 320 REMARK 465 ARG D 321 REMARK 465 ALA D 453 REMARK 465 GLU D 454 REMARK 465 THR D 455 REMARK 465 PRO D 456 REMARK 465 GLU D 457 REMARK 465 GLN D 458 REMARK 465 GLN D 459 REMARK 465 GLN D 460 REMARK 465 LEU D 461 REMARK 465 SER D 462 REMARK 465 LEU D 463 REMARK 465 LEU D 464 REMARK 465 ASP D 465 REMARK 465 ASP D 466 REMARK 465 SER D 467 REMARK 465 ASP D 468 REMARK 465 GLY D 469 REMARK 465 VAL D 470 REMARK 465 ASP D 471 REMARK 465 GLU D 472 REMARK 465 DG F 5 REMARK 465 DA F 6 REMARK 465 DC F 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA B 11 O3' REMARK 470 DA E 11 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 656 O HOH A 1101 1.95 REMARK 500 OE1 GLU A 876 NH1 ARG A 880 1.98 REMARK 500 O HOH A 1126 O HOH A 1438 2.00 REMARK 500 O HOH A 1228 O HOH A 1438 2.07 REMARK 500 NH2 ARG A 615 O2 DC B 8 2.07 REMARK 500 OD1 ASP A 440 O HOH A 1102 2.09 REMARK 500 NH2 ARG A 321 O HOH A 1103 2.10 REMARK 500 N VAL A 736 O HOH A 1104 2.13 REMARK 500 O ASP D 355 O HOH D 1101 2.15 REMARK 500 OH TYR D 741 O1B DCT D 1001 2.16 REMARK 500 OE1 GLU D 768 O HOH D 1102 2.17 REMARK 500 O ASP A 669 O HOH A 1105 2.17 REMARK 500 OD2 ASP A 382 O HOH A 1106 2.18 REMARK 500 N GLY D 554 O HOH D 1103 2.18 REMARK 500 O HOH A 1279 O HOH A 1285 2.19 REMARK 500 O HIS A 908 O HOH A 1107 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 435 O ASP A 808 3454 1.06 REMARK 500 NH1 ARG D 812 OP1 DT E 5 3454 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG D 435 CB ARG D 435 CG -0.205 REMARK 500 ARG D 435 NE ARG D 435 CZ -0.080 REMARK 500 LYS D 580 CE LYS D 580 NZ 0.194 REMARK 500 ASP D 808 CB ASP D 808 CG 0.237 REMARK 500 DT F 13 O3' DT F 13 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 632 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 812 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA B 4 O5' - P - OP2 ANGL. DEV. = -7.5 DEGREES REMARK 500 DC B 8 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 ARG D 435 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG D 435 CB - CG - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG D 435 CG - CD - NE ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG D 812 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 DT E 5 O3' - P - OP2 ANGL. DEV. = 9.3 DEGREES REMARK 500 DT E 5 O5' - P - OP1 ANGL. DEV. = -27.3 DEGREES REMARK 500 DT E 5 O5' - P - OP2 ANGL. DEV. = 9.6 DEGREES REMARK 500 DC E 8 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 375 47.46 -82.22 REMARK 500 ILE A 641 -53.45 -124.56 REMARK 500 SER A 809 134.90 -32.40 REMARK 500 HIS A 860 -38.07 61.22 REMARK 500 GLU D 401 66.62 61.20 REMARK 500 GLU D 572 -161.52 -77.51 REMARK 500 LEU D 573 116.81 -30.81 REMARK 500 ILE D 641 -52.69 -122.91 REMARK 500 LEU D 756 -84.74 -111.22 REMARK 500 LYS D 757 95.10 -176.46 REMARK 500 HIS D 860 -37.61 63.43 REMARK 500 ASP D 861 17.27 -140.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU D 756 LYS D 757 135.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1497 DISTANCE = 7.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 641 O REMARK 620 2 HOH A1205 O 83.8 REMARK 620 3 HOH A1394 O 164.5 92.8 REMARK 620 4 HOH A1413 O 97.0 175.4 85.2 REMARK 620 5 HOH A1428 O 108.5 93.3 86.7 90.8 REMARK 620 6 HOH C 104 O 82.5 92.7 82.6 82.9 168.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCT A1001 O5' REMARK 620 2 DCT A1001 O2B 86.8 REMARK 620 3 DCT A1001 O3G 95.5 87.6 REMARK 620 4 HOH A1287 O 174.8 88.3 85.8 REMARK 620 5 HOH A1301 O 93.8 85.9 168.3 84.2 REMARK 620 6 HOH A1339 O 91.8 173.2 99.1 92.9 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1211 O REMARK 620 2 HOH A1383 O 95.3 REMARK 620 3 HOH A1419 O 84.2 77.3 REMARK 620 4 HOH A1467 O 97.3 114.7 167.6 REMARK 620 5 HOH A1495 O 165.5 78.8 81.6 97.2 REMARK 620 6 HOH D1375 O 89.1 150.0 73.7 94.0 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1146 O REMARK 620 2 HOH A1168 O 96.1 REMARK 620 3 HOH A1367 O 92.8 84.5 REMARK 620 4 HOH A1385 O 163.3 96.8 78.1 REMARK 620 5 DA B 11 OP1 102.7 92.1 164.4 87.2 REMARK 620 6 HOH B 221 O 75.1 169.7 101.0 92.8 84.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE D 641 O REMARK 620 2 HOH D1182 O 87.0 REMARK 620 3 HOH D1270 O 165.2 83.4 REMARK 620 4 HOH D1336 O 96.3 97.5 96.0 REMARK 620 5 HOH D1354 O 101.8 169.0 86.7 88.3 REMARK 620 6 HOH F 105 O 85.6 84.7 82.5 177.2 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCT D1001 O5' REMARK 620 2 DCT D1001 O2B 62.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DCT D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 1003 DBREF 6VDD A 304 908 UNP I7G3P9 I7G3P9_MYCS2 304 908 DBREF 6VDD B 1 11 PDB 6VDD 6VDD 1 11 DBREF 6VDD C 7 20 PDB 6VDD 6VDD 7 20 DBREF 6VDD D 304 908 UNP I7G3P9 I7G3P9_MYCS2 304 908 DBREF 6VDD E 1 11 PDB 6VDD 6VDD 1 11 DBREF 6VDD F 5 20 PDB 6VDD 6VDD 5 20 SEQRES 1 A 605 PHE GLU THR LEU VAL ALA VAL GLU PRO GLU VAL GLU HIS SEQRES 2 A 605 GLY PHE ASP VAL ARG GLY ARG ALA LEU GLU PRO GLY GLU SEQRES 3 A 605 LEU ALA ALA TRP LEU SER GLU HIS SER LEU GLY SER ARG SEQRES 4 A 605 PHE GLY VAL ALA VAL VAL GLY THR HIS LYS ALA TYR ASP SEQRES 5 A 605 ALA ASP ALA THR ALA LEU ALA ILE VAL ALA ALA ASP GLY SEQRES 6 A 605 ASP GLY ARG TYR ILE ASP THR SER THR LEU THR PRO GLU SEQRES 7 A 605 ASP GLU ALA ALA LEU ALA SER TRP LEU ALA ASP PRO GLY SEQRES 8 A 605 PRO PRO LYS ALA LEU HIS GLU ALA LYS LEU ALA MET HIS SEQRES 9 A 605 ASP LEU ALA GLY ARG GLY TRP THR LEU ARG GLY VAL THR SEQRES 10 A 605 SER ASP THR ALA LEU ALA ALA TYR LEU VAL ARG PRO GLY SEQRES 11 A 605 GLN ARG SER PHE THR LEU ASP ASP LEU ALA VAL ARG TYR SEQRES 12 A 605 LEU HIS ARG GLU LEU ARG ALA GLU THR PRO GLU GLN GLN SEQRES 13 A 605 GLN LEU SER LEU LEU ASP ASP SER ASP GLY VAL ASP GLU SEQRES 14 A 605 GLN ALA VAL GLN THR VAL ILE LEU ARG ALA CYS ALA VAL SEQRES 15 A 605 LEU ASP LEU ALA ASP ALA LEU ASP GLN GLU LEU ALA ARG SEQRES 16 A 605 ILE ASP SER LEU SER LEU LEU SER ARG MET GLU LEU PRO SEQRES 17 A 605 VAL GLN ARG THR LEU ALA GLU MET GLU HIS ALA GLY ILE SEQRES 18 A 605 ALA VAL ASP LEU GLY MET LEU GLU GLN LEU GLN SER GLU SEQRES 19 A 605 PHE ALA ASP GLN ILE ARG ASP ALA ALA GLU ALA ALA TYR SEQRES 20 A 605 SER VAL ILE GLY LYS GLN ILE ASN LEU GLY SER PRO LYS SEQRES 21 A 605 GLN LEU GLN ALA VAL LEU PHE ASP GLU LEU GLU MET PRO SEQRES 22 A 605 LYS THR LYS LYS THR LYS THR GLY TYR THR THR ASP ALA SEQRES 23 A 605 ASP ALA LEU GLN SER LEU PHE GLU LYS THR GLY HIS PRO SEQRES 24 A 605 PHE LEU GLN HIS LEU LEU ALA HIS ARG ASP ALA THR ARG SEQRES 25 A 605 LEU LYS VAL THR VAL ASP GLY LEU LEU ASN SER VAL ALA SEQRES 26 A 605 SER ASP GLY ARG ILE HIS THR THR PHE ASN GLN THR ILE SEQRES 27 A 605 ALA ALA THR GLY ARG LEU SER SER THR GLU PRO ASN LEU SEQRES 28 A 605 GLN ASN ILE PRO ILE ARG THR GLU ALA GLY ARG ARG ILE SEQRES 29 A 605 ARG ASP ALA PHE VAL VAL GLY GLU GLY TYR ALA GLU LEU SEQRES 30 A 605 MET THR ALA ASP TYR SER GLN ILE GLU MET ARG ILE MET SEQRES 31 A 605 ALA HIS LEU SER ARG ASP ALA GLY LEU ILE GLU ALA PHE SEQRES 32 A 605 ASN THR GLY GLU ASP LEU HIS SER PHE VAL ALA SER ARG SEQRES 33 A 605 ALA PHE SER VAL PRO ILE ASP GLU VAL THR PRO GLU LEU SEQRES 34 A 605 ARG ARG ARG VAL LYS ALA MET SER TYR GLY LEU ALA TYR SEQRES 35 A 605 GLY LEU SER ALA TYR GLY LEU ALA GLN GLN LEU LYS ILE SEQRES 36 A 605 SER THR GLU GLU ALA LYS VAL GLN MET GLU GLN TYR PHE SEQRES 37 A 605 ASP ARG PHE GLY GLY VAL ARG ASP TYR LEU ARG ASP VAL SEQRES 38 A 605 VAL ASP GLN ALA ARG LYS ASP GLY TYR THR SER THR VAL SEQRES 39 A 605 LEU GLY ARG ARG ARG TYR LEU PRO GLU LEU ASP SER SER SEQRES 40 A 605 ASN ARG GLN VAL ARG GLU ALA ALA GLU ARG ALA ALA LEU SEQRES 41 A 605 ASN ALA PRO ILE GLN GLY SER ALA ALA ASP ILE ILE LYS SEQRES 42 A 605 VAL ALA MET ILE ASN VAL ASP GLN ALA ILE LYS ASP ALA SEQRES 43 A 605 GLY LEU ARG SER ARG ILE LEU LEU GLN VAL HIS ASP GLU SEQRES 44 A 605 LEU LEU PHE GLU VAL SER GLU GLY GLU GLN GLY GLU LEU SEQRES 45 A 605 GLU GLN LEU VAL ARG GLU HIS MET GLY ASN ALA TYR PRO SEQRES 46 A 605 LEU ASP VAL PRO LEU GLU VAL SER VAL GLY TYR GLY ARG SEQRES 47 A 605 SER TRP ASP ALA ALA ALA HIS SEQRES 1 B 11 DG DC DG DA DT DC DA DC DG DT DA SEQRES 1 C 14 DC DG DT DA DC DG DT DG DA DT DC DG DC SEQRES 2 C 14 DA SEQRES 1 D 605 PHE GLU THR LEU VAL ALA VAL GLU PRO GLU VAL GLU HIS SEQRES 2 D 605 GLY PHE ASP VAL ARG GLY ARG ALA LEU GLU PRO GLY GLU SEQRES 3 D 605 LEU ALA ALA TRP LEU SER GLU HIS SER LEU GLY SER ARG SEQRES 4 D 605 PHE GLY VAL ALA VAL VAL GLY THR HIS LYS ALA TYR ASP SEQRES 5 D 605 ALA ASP ALA THR ALA LEU ALA ILE VAL ALA ALA ASP GLY SEQRES 6 D 605 ASP GLY ARG TYR ILE ASP THR SER THR LEU THR PRO GLU SEQRES 7 D 605 ASP GLU ALA ALA LEU ALA SER TRP LEU ALA ASP PRO GLY SEQRES 8 D 605 PRO PRO LYS ALA LEU HIS GLU ALA LYS LEU ALA MET HIS SEQRES 9 D 605 ASP LEU ALA GLY ARG GLY TRP THR LEU ARG GLY VAL THR SEQRES 10 D 605 SER ASP THR ALA LEU ALA ALA TYR LEU VAL ARG PRO GLY SEQRES 11 D 605 GLN ARG SER PHE THR LEU ASP ASP LEU ALA VAL ARG TYR SEQRES 12 D 605 LEU HIS ARG GLU LEU ARG ALA GLU THR PRO GLU GLN GLN SEQRES 13 D 605 GLN LEU SER LEU LEU ASP ASP SER ASP GLY VAL ASP GLU SEQRES 14 D 605 GLN ALA VAL GLN THR VAL ILE LEU ARG ALA CYS ALA VAL SEQRES 15 D 605 LEU ASP LEU ALA ASP ALA LEU ASP GLN GLU LEU ALA ARG SEQRES 16 D 605 ILE ASP SER LEU SER LEU LEU SER ARG MET GLU LEU PRO SEQRES 17 D 605 VAL GLN ARG THR LEU ALA GLU MET GLU HIS ALA GLY ILE SEQRES 18 D 605 ALA VAL ASP LEU GLY MET LEU GLU GLN LEU GLN SER GLU SEQRES 19 D 605 PHE ALA ASP GLN ILE ARG ASP ALA ALA GLU ALA ALA TYR SEQRES 20 D 605 SER VAL ILE GLY LYS GLN ILE ASN LEU GLY SER PRO LYS SEQRES 21 D 605 GLN LEU GLN ALA VAL LEU PHE ASP GLU LEU GLU MET PRO SEQRES 22 D 605 LYS THR LYS LYS THR LYS THR GLY TYR THR THR ASP ALA SEQRES 23 D 605 ASP ALA LEU GLN SER LEU PHE GLU LYS THR GLY HIS PRO SEQRES 24 D 605 PHE LEU GLN HIS LEU LEU ALA HIS ARG ASP ALA THR ARG SEQRES 25 D 605 LEU LYS VAL THR VAL ASP GLY LEU LEU ASN SER VAL ALA SEQRES 26 D 605 SER ASP GLY ARG ILE HIS THR THR PHE ASN GLN THR ILE SEQRES 27 D 605 ALA ALA THR GLY ARG LEU SER SER THR GLU PRO ASN LEU SEQRES 28 D 605 GLN ASN ILE PRO ILE ARG THR GLU ALA GLY ARG ARG ILE SEQRES 29 D 605 ARG ASP ALA PHE VAL VAL GLY GLU GLY TYR ALA GLU LEU SEQRES 30 D 605 MET THR ALA ASP TYR SER GLN ILE GLU MET ARG ILE MET SEQRES 31 D 605 ALA HIS LEU SER ARG ASP ALA GLY LEU ILE GLU ALA PHE SEQRES 32 D 605 ASN THR GLY GLU ASP LEU HIS SER PHE VAL ALA SER ARG SEQRES 33 D 605 ALA PHE SER VAL PRO ILE ASP GLU VAL THR PRO GLU LEU SEQRES 34 D 605 ARG ARG ARG VAL LYS ALA MET SER TYR GLY LEU ALA TYR SEQRES 35 D 605 GLY LEU SER ALA TYR GLY LEU ALA GLN GLN LEU LYS ILE SEQRES 36 D 605 SER THR GLU GLU ALA LYS VAL GLN MET GLU GLN TYR PHE SEQRES 37 D 605 ASP ARG PHE GLY GLY VAL ARG ASP TYR LEU ARG ASP VAL SEQRES 38 D 605 VAL ASP GLN ALA ARG LYS ASP GLY TYR THR SER THR VAL SEQRES 39 D 605 LEU GLY ARG ARG ARG TYR LEU PRO GLU LEU ASP SER SER SEQRES 40 D 605 ASN ARG GLN VAL ARG GLU ALA ALA GLU ARG ALA ALA LEU SEQRES 41 D 605 ASN ALA PRO ILE GLN GLY SER ALA ALA ASP ILE ILE LYS SEQRES 42 D 605 VAL ALA MET ILE ASN VAL ASP GLN ALA ILE LYS ASP ALA SEQRES 43 D 605 GLY LEU ARG SER ARG ILE LEU LEU GLN VAL HIS ASP GLU SEQRES 44 D 605 LEU LEU PHE GLU VAL SER GLU GLY GLU GLN GLY GLU LEU SEQRES 45 D 605 GLU GLN LEU VAL ARG GLU HIS MET GLY ASN ALA TYR PRO SEQRES 46 D 605 LEU ASP VAL PRO LEU GLU VAL SER VAL GLY TYR GLY ARG SEQRES 47 D 605 SER TRP ASP ALA ALA ALA HIS SEQRES 1 E 11 DG DC DG DA DT DC DA DC DG DT DA SEQRES 1 F 16 DG DA DC DG DT DA DC DG DT DG DA DT DC SEQRES 2 F 16 DG DC DA HET DCT A1001 13 HET MG A1002 1 HET MG A1003 1 HET MG A1004 1 HET MG B 101 1 HET DCT D1001 13 HET MG D1002 1 HET MG D1003 1 HETNAM DCT 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 7 DCT 2(C9 H16 N3 O12 P3) FORMUL 8 MG 6(MG 2+) FORMUL 15 HOH *812(H2 O) HELIX 1 AA1 GLU A 329 HIS A 337 1 9 HELIX 2 AA2 THR A 379 ASP A 392 1 14 HELIX 3 AA3 GLU A 401 GLY A 411 1 11 HELIX 4 AA4 THR A 423 ARG A 431 1 9 HELIX 5 AA5 THR A 438 HIS A 448 1 11 HELIX 6 AA6 VAL A 475 ILE A 499 1 25 HELIX 7 AA7 SER A 501 MET A 508 1 8 HELIX 8 AA8 MET A 508 GLY A 523 1 16 HELIX 9 AA9 ASP A 527 GLY A 554 1 28 HELIX 10 AB1 SER A 561 ASP A 571 1 11 HELIX 11 AB2 ASP A 588 GLY A 600 1 13 HELIX 12 AB3 HIS A 601 VAL A 627 1 27 HELIX 13 AB4 THR A 661 ASP A 669 1 9 HELIX 14 AB5 GLN A 687 ARG A 698 1 12 HELIX 15 AB6 ASP A 699 THR A 708 1 10 HELIX 16 AB7 ASP A 711 SER A 722 1 12 HELIX 17 AB8 PRO A 724 VAL A 728 5 5 HELIX 18 AB9 THR A 729 TYR A 745 1 17 HELIX 19 AC1 SER A 748 LYS A 757 1 10 HELIX 20 AC2 SER A 759 PHE A 774 1 16 HELIX 21 AC3 PHE A 774 GLY A 792 1 19 HELIX 22 AC4 PRO A 805 ASP A 808 5 4 HELIX 23 AC5 ASN A 811 ALA A 849 1 39 HELIX 24 AC6 GLU A 871 ASN A 885 1 15 HELIX 25 AC7 GLU D 329 HIS D 337 1 9 HELIX 26 AC8 THR D 379 ASP D 392 1 14 HELIX 27 AC9 GLU D 401 GLY D 411 1 11 HELIX 28 AD1 THR D 423 ARG D 431 1 9 HELIX 29 AD2 THR D 438 HIS D 448 1 11 HELIX 30 AD3 ALA D 474 ILE D 499 1 26 HELIX 31 AD4 SER D 501 MET D 508 1 8 HELIX 32 AD5 MET D 508 GLY D 523 1 16 HELIX 33 AD6 ASP D 527 ILE D 553 1 27 HELIX 34 AD7 SER D 561 ASP D 571 1 11 HELIX 35 AD8 ASP D 588 GLY D 600 1 13 HELIX 36 AD9 PRO D 602 ASN D 625 1 24 HELIX 37 AE1 THR D 661 ASP D 669 1 9 HELIX 38 AE2 GLN D 687 ARG D 698 1 12 HELIX 39 AE3 ASP D 699 THR D 708 1 10 HELIX 40 AE4 ASP D 711 PHE D 721 1 11 HELIX 41 AE5 PRO D 724 VAL D 728 5 5 HELIX 42 AE6 THR D 729 TYR D 745 1 17 HELIX 43 AE7 SER D 748 LEU D 756 1 9 HELIX 44 AE8 SER D 759 PHE D 774 1 16 HELIX 45 AE9 GLY D 776 GLY D 792 1 17 HELIX 46 AF1 PRO D 805 SER D 809 5 5 HELIX 47 AF2 ASN D 811 ALA D 849 1 39 HELIX 48 AF3 GLU D 871 ASN D 885 1 15 SHEET 1 AA1 6 GLY A 322 ALA A 324 0 SHEET 2 AA1 6 GLY A 370 ASP A 374 1 O GLY A 370 N ARG A 323 SHEET 3 AA1 6 ALA A 358 VAL A 364 -1 N LEU A 361 O ILE A 373 SHEET 4 AA1 6 PHE A 343 GLY A 349 -1 N VAL A 348 O ALA A 360 SHEET 5 AA1 6 LYS A 397 LEU A 399 1 O ALA A 398 N PHE A 343 SHEET 6 AA1 6 VAL A 419 ASP A 422 1 O THR A 420 N LYS A 397 SHEET 1 AA2 2 ILE A 524 ALA A 525 0 SHEET 2 AA2 2 ARG A 632 ILE A 633 -1 O ILE A 633 N ILE A 524 SHEET 1 AA3 2 THR A 636 ASN A 638 0 SHEET 2 AA3 2 SER A 648 THR A 650 -1 O THR A 650 N THR A 636 SHEET 1 AA4 4 ARG A 854 GLN A 858 0 SHEET 2 AA4 4 GLU A 862 VAL A 867 -1 O LEU A 864 N LEU A 856 SHEET 3 AA4 4 GLU A 679 TYR A 685 -1 N MET A 681 O PHE A 865 SHEET 4 AA4 4 VAL A 895 GLY A 900 -1 O GLY A 900 N LEU A 680 SHEET 1 AA5 2 TYR A 793 SER A 795 0 SHEET 2 AA5 2 ARG A 801 TYR A 803 -1 O ARG A 802 N THR A 794 SHEET 1 AA6 6 ARG D 323 ALA D 324 0 SHEET 2 AA6 6 GLY D 370 ASP D 374 1 O TYR D 372 N ARG D 323 SHEET 3 AA6 6 ALA D 358 VAL D 364 -1 N LEU D 361 O ILE D 373 SHEET 4 AA6 6 PHE D 343 GLY D 349 -1 N VAL D 348 O ALA D 360 SHEET 5 AA6 6 LYS D 397 LEU D 399 1 O ALA D 398 N VAL D 345 SHEET 6 AA6 6 VAL D 419 ASP D 422 1 O THR D 420 N LYS D 397 SHEET 1 AA7 3 ARG D 632 ILE D 633 0 SHEET 2 AA7 3 ILE D 524 VAL D 526 -1 N ILE D 524 O ILE D 633 SHEET 3 AA7 3 PHE D 671 VAL D 672 -1 O VAL D 672 N ALA D 525 SHEET 1 AA8 2 THR D 636 ASN D 638 0 SHEET 2 AA8 2 SER D 648 THR D 650 -1 O SER D 648 N ASN D 638 SHEET 1 AA9 4 ARG D 854 GLN D 858 0 SHEET 2 AA9 4 GLU D 862 VAL D 867 -1 O LEU D 864 N LEU D 856 SHEET 3 AA9 4 GLU D 679 TYR D 685 -1 N GLU D 679 O VAL D 867 SHEET 4 AA9 4 VAL D 895 GLY D 900 -1 O GLY D 900 N LEU D 680 SHEET 1 AB1 2 TYR D 793 SER D 795 0 SHEET 2 AB1 2 ARG D 801 TYR D 803 -1 O ARG D 802 N THR D 794 LINK O ILE A 641 MG MG A1004 1555 1555 2.13 LINK O5' DCT A1001 MG MG A1002 1555 1555 2.02 LINK O2B DCT A1001 MG MG A1002 1555 1555 2.24 LINK O3G DCT A1001 MG MG A1002 1555 1555 2.13 LINK MG MG A1002 O HOH A1287 1555 1555 2.06 LINK MG MG A1002 O HOH A1301 1555 1555 2.15 LINK MG MG A1002 O HOH A1339 1555 1555 2.07 LINK MG MG A1003 O HOH A1211 1555 1555 2.29 LINK MG MG A1003 O HOH A1383 1555 1555 2.12 LINK MG MG A1003 O HOH A1419 1555 1555 2.35 LINK MG MG A1003 O HOH A1467 1555 1555 2.02 LINK MG MG A1003 O HOH A1495 1555 1555 2.04 LINK MG MG A1003 O HOH D1375 1555 8445 2.51 LINK MG MG A1004 O HOH A1205 1555 1555 2.01 LINK MG MG A1004 O HOH A1394 1555 1555 2.19 LINK MG MG A1004 O HOH A1413 1555 1555 2.15 LINK MG MG A1004 O HOH A1428 1555 1555 1.96 LINK MG MG A1004 O HOH C 104 1555 1555 2.05 LINK O HOH A1146 MG MG B 101 1555 1555 2.40 LINK O HOH A1168 MG MG B 101 1555 1555 2.15 LINK O HOH A1367 MG MG B 101 1555 1555 2.14 LINK O HOH A1385 MG MG B 101 1555 1555 2.29 LINK OP1 DA B 11 MG MG B 101 1555 1555 2.34 LINK MG MG B 101 O HOH B 221 1555 1555 2.45 LINK O ILE D 641 MG MG D1003 1555 1555 2.20 LINK O5' DCT D1001 MG MG D1002 1555 1555 2.83 LINK O2B DCT D1001 MG MG D1002 1555 1555 2.29 LINK MG MG D1003 O HOH D1182 1555 1555 2.04 LINK MG MG D1003 O HOH D1270 1555 1555 2.25 LINK MG MG D1003 O HOH D1336 1555 1555 2.04 LINK MG MG D1003 O HOH D1354 1555 1555 2.21 LINK MG MG D1003 O HOH F 105 1555 1555 2.07 CISPEP 1 GLU A 651 PRO A 652 0 -5.56 CISPEP 2 GLU D 651 PRO D 652 0 -6.75 SITE 1 AC1 12 GLN A 687 HIS A 713 ARG A 733 LYS A 737 SITE 2 AC1 12 TYR A 741 MG A1002 HOH A1146 HOH A1236 SITE 3 AC1 12 HOH A1278 HOH A1287 HOH A1301 HOH A1339 SITE 1 AC2 4 DCT A1001 HOH A1287 HOH A1301 HOH A1339 SITE 1 AC3 6 HOH A1211 HOH A1383 HOH A1419 HOH A1467 SITE 2 AC3 6 HOH A1495 HOH D1375 SITE 1 AC4 6 ILE A 641 HOH A1205 HOH A1394 HOH A1413 SITE 2 AC4 6 HOH A1428 HOH C 104 SITE 1 AC5 6 HOH A1146 HOH A1168 HOH A1367 HOH A1385 SITE 2 AC5 6 DA B 11 HOH B 221 SITE 1 AC6 6 GLN D 687 HIS D 713 ARG D 733 LYS D 737 SITE 2 AC6 6 TYR D 741 MG D1002 SITE 1 AC7 2 GLN D 687 DCT D1001 SITE 1 AC8 6 ILE D 641 HOH D1182 HOH D1270 HOH D1336 SITE 2 AC8 6 HOH D1354 HOH F 105 CRYST1 66.664 233.805 169.289 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005907 0.00000