HEADER VIRAL PROTEIN 27-DEC-19 6VDL TITLE HCV NS3/4A PROTEASE A156T MUTANT IN COMPLEX WITH GLECAPREVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 4A, SERINE PROTEASE NS3; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.-,3.4.21.98,3.6.1.15,3.6.4.13,2.7.7.48; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS GENOTYPE 1A (ISOLATE 1); SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11104; SOURCE 5 STRAIN: ISOLATE 1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HCV PROTEASE, NS34A PROTEASE, GLECAPREVIR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TIMM,C.A.SCHIFFER REVDAT 2 11-OCT-23 6VDL 1 REMARK REVDAT 1 30-DEC-20 6VDL 0 JRNL AUTH J.TIMM,J.ZEPHYR,S.HOU,N.KURT YILMAZ,C.A.SCHIFFER JRNL TITL RAS AT POSITION 156 OF HCV NS3/4A PROTEASE ABOLISH JRNL TITL 2 INHIBITION BY CURRENT HCV DRUGS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 14087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5600 - 3.3300 0.99 2864 150 0.1631 0.1902 REMARK 3 2 3.3300 - 2.6400 0.98 2716 143 0.1583 0.1987 REMARK 3 3 2.6400 - 2.3100 0.97 2635 143 0.1461 0.2361 REMARK 3 4 2.3100 - 2.1000 0.96 2614 132 0.1327 0.1805 REMARK 3 5 2.1000 - 1.9500 0.94 2550 140 0.1370 0.2033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.106 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1572 REMARK 3 ANGLE : 1.017 2153 REMARK 3 CHIRALITY : 0.054 248 REMARK 3 PLANARITY : 0.006 270 REMARK 3 DIHEDRAL : 11.406 1510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VDL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14094 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.949 REMARK 200 RESOLUTION RANGE LOW (A) : 19.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6P6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH6.5, 2% AMMONIUM SULFATE, REMARK 280 20-25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.39650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.94500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.94500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.39650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 1180 REMARK 465 SER A 1181 REMARK 465 PRO A 1182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1003 CG OD1 OD2 REMARK 470 GLU A1013 CG CD OE1 OE2 REMARK 470 GLU A1014 CG CD OE1 OE2 REMARK 470 GLN A1021 CG CD OE1 NE2 REMARK 470 LYS A1026 CG CD CE NZ REMARK 470 GLN A1028 CG CD OE1 NE2 REMARK 470 LYS A1068 CG CD CE NZ REMARK 470 ARG A1092 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1161 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 1049 O HOH A 1301 1.94 REMARK 500 O HOH A 1415 O HOH A 1495 1.97 REMARK 500 O HOH A 1449 O HOH A 1465 1.98 REMARK 500 OE1 GLU A 1173 O HOH A 1302 2.01 REMARK 500 O HOH A 1393 O HOH A 1470 2.05 REMARK 500 OD1 ASP A 1168 O HOH A 1303 2.07 REMARK 500 O HOH A 1426 O HOH A 1479 2.07 REMARK 500 O HOH A 1449 O HOH A 1471 2.11 REMARK 500 O HOH A 1499 O HOH A 1506 2.12 REMARK 500 O HOH A 1452 O HOH A 1468 2.12 REMARK 500 O HOH A 1455 O HOH A 1482 2.13 REMARK 500 O HOH A 1301 O HOH A 1484 2.14 REMARK 500 O HOH A 1456 O HOH A 1474 2.16 REMARK 500 O HOH A 1334 O HOH A 1499 2.16 REMARK 500 O HOH A 1458 O HOH A 1476 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1463 O HOH A 1470 4545 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1038 -169.37 -109.34 REMARK 500 PHE A1043 -161.60 -160.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1097 SG REMARK 620 2 CYS A1099 SG 111.6 REMARK 620 3 CYS A1145 SG 110.4 120.5 REMARK 620 4 HIS A1149 ND1 124.2 94.6 94.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O31 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1206 DBREF 6VDL A 990 1000 UNP P26664 POLG_HCV1 1678 1688 DBREF 6VDL A 1004 1182 UNP P26664 POLG_HCV1 1030 1208 SEQADV 6VDL GLY A 980 UNP P26664 EXPRESSION TAG SEQADV 6VDL SER A 981 UNP P26664 EXPRESSION TAG SEQADV 6VDL HIS A 982 UNP P26664 EXPRESSION TAG SEQADV 6VDL MET A 983 UNP P26664 EXPRESSION TAG SEQADV 6VDL ALA A 984 UNP P26664 EXPRESSION TAG SEQADV 6VDL SER A 985 UNP P26664 EXPRESSION TAG SEQADV 6VDL MET A 986 UNP P26664 EXPRESSION TAG SEQADV 6VDL LYS A 987 UNP P26664 EXPRESSION TAG SEQADV 6VDL LYS A 988 UNP P26664 EXPRESSION TAG SEQADV 6VDL LYS A 989 UNP P26664 EXPRESSION TAG SEQADV 6VDL SER A 991 UNP P26664 CYS 1679 ENGINEERED MUTATION SEQADV 6VDL ILE A 998 UNP P26664 VAL 1686 ENGINEERED MUTATION SEQADV 6VDL ASN A 999 UNP P26664 VAL 1687 ENGINEERED MUTATION SEQADV 6VDL SER A 1001 UNP P26664 LINKER SEQADV 6VDL GLY A 1002 UNP P26664 LINKER SEQADV 6VDL ASP A 1003 UNP P26664 LINKER SEQADV 6VDL GLU A 1013 UNP P26664 LEU 1039 ENGINEERED MUTATION SEQADV 6VDL GLU A 1014 UNP P26664 LEU 1040 ENGINEERED MUTATION SEQADV 6VDL GLN A 1017 UNP P26664 ILE 1043 ENGINEERED MUTATION SEQADV 6VDL GLU A 1018 UNP P26664 ILE 1044 ENGINEERED MUTATION SEQADV 6VDL GLN A 1021 UNP P26664 LEU 1047 ENGINEERED MUTATION SEQADV 6VDL THR A 1040 UNP P26664 ALA 1066 ENGINEERED MUTATION SEQADV 6VDL SER A 1047 UNP P26664 CYS 1073 ENGINEERED MUTATION SEQADV 6VDL LEU A 1052 UNP P26664 CYS 1078 ENGINEERED MUTATION SEQADV 6VDL THR A 1072 UNP P26664 ILE 1098 ENGINEERED MUTATION SEQADV 6VDL LYS A 1080 UNP P26664 GLN 1106 ENGINEERED MUTATION SEQADV 6VDL GLN A 1086 UNP P26664 PRO 1112 ENGINEERED MUTATION SEQADV 6VDL THR A 1156 UNP P26664 ALA 1182 ENGINEERED MUTATION SEQADV 6VDL SER A 1174 UNP P26664 ASN 1200 ENGINEERED MUTATION SEQRES 1 A 203 GLY SER HIS MET ALA SER MET LYS LYS LYS GLY SER VAL SEQRES 2 A 203 VAL ILE VAL GLY ARG ILE ASN LEU SER GLY ASP THR ALA SEQRES 3 A 203 TYR ALA GLN GLN THR ARG GLY GLU GLU GLY CYS GLN GLU SEQRES 4 A 203 THR SER GLN THR GLY ARG ASP LYS ASN GLN VAL GLU GLY SEQRES 5 A 203 GLU VAL GLN ILE VAL SER THR ALA THR GLN THR PHE LEU SEQRES 6 A 203 ALA THR SER ILE ASN GLY VAL LEU TRP THR VAL TYR HIS SEQRES 7 A 203 GLY ALA GLY THR ARG THR ILE ALA SER PRO LYS GLY PRO SEQRES 8 A 203 VAL THR GLN MET TYR THR ASN VAL ASP LYS ASP LEU VAL SEQRES 9 A 203 GLY TRP GLN ALA PRO GLN GLY SER ARG SER LEU THR PRO SEQRES 10 A 203 CYS THR CYS GLY SER SER ASP LEU TYR LEU VAL THR ARG SEQRES 11 A 203 HIS ALA ASP VAL ILE PRO VAL ARG ARG ARG GLY ASP SER SEQRES 12 A 203 ARG GLY SER LEU LEU SER PRO ARG PRO ILE SER TYR LEU SEQRES 13 A 203 LYS GLY SER SER GLY GLY PRO LEU LEU CYS PRO ALA GLY SEQRES 14 A 203 HIS ALA VAL GLY ILE PHE ARG THR ALA VAL CYS THR ARG SEQRES 15 A 203 GLY VAL ALA LYS ALA VAL ASP PHE ILE PRO VAL GLU SER SEQRES 16 A 203 LEU GLU THR THR MET ARG SER PRO HET ZN A1201 1 HET O31 A1202 104 HET GOL A1203 14 HET GOL A1204 13 HET SO4 A1205 5 HET SO4 A1206 5 HETNAM ZN ZINC ION HETNAM O31 (3AR,7S,10S,12R,21E,24AR)-7-TERT-BUTYL-N-[(1R,2R)-2- HETNAM 2 O31 (DIFLUOROMETHYL)-1-{[(1-METHYLCYCLOPROPYL) HETNAM 3 O31 SULFONYL]CARBAMOYL}CYCLOP ROPYL]-20,20-DIFLUORO-5,8- HETNAM 4 O31 DIOXO-2,3,3A,5,6,7,8,11,12,20,23,24A-DODECAHYDRO-1H, HETNAM 5 O31 10H-9,12-METHANOCYCLOPENTA[18,19][1,10,17, 3, HETNAM 6 O31 6]TRIOXADIAZACYCLONONADECINO[11,12-B]QUINOXALINE-10- HETNAM 7 O31 CARBOXAMIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN O31 GLECAPREVIR HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 O31 C38 H46 F4 N6 O9 S FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 HOH *208(H2 O) HELIX 1 AA1 HIS A 982 MET A 986 5 5 HELIX 2 AA2 GLY A 1012 GLY A 1023 1 12 HELIX 3 AA3 TYR A 1056 GLY A 1060 1 5 HELIX 4 AA4 VAL A 1078 LYS A 1080 5 3 HELIX 5 AA5 SER A 1133 LEU A 1135 5 3 HELIX 6 AA6 VAL A 1172 MET A 1179 1 8 SHEET 1 AA1 7 TYR A1006 GLN A1009 0 SHEET 2 AA1 7 VAL A 993 ASN A 999 -1 N ASN A 999 O TYR A1006 SHEET 3 AA1 7 VAL A1033 SER A1037 -1 O ILE A1035 N VAL A 995 SHEET 4 AA1 7 THR A1042 ILE A1048 -1 O ALA A1045 N GLN A1034 SHEET 5 AA1 7 VAL A1051 VAL A1055 -1 O TRP A1053 N THR A1046 SHEET 6 AA1 7 LEU A1082 GLN A1086 -1 O TRP A1085 N LEU A1052 SHEET 7 AA1 7 TYR A1075 ASN A1077 -1 N ASN A1077 O LEU A1082 SHEET 1 AA2 7 ASP A1103 VAL A1107 0 SHEET 2 AA2 7 VAL A1113 ARG A1118 -1 O ILE A1114 N LEU A1106 SHEET 3 AA2 7 ARG A1123 PRO A1131 -1 O SER A1125 N ARG A1117 SHEET 4 AA2 7 VAL A1163 PRO A1171 -1 O VAL A1167 N GLY A1124 SHEET 5 AA2 7 ALA A1150 THR A1160 -1 N VAL A1158 O ALA A1166 SHEET 6 AA2 7 PRO A1142 LEU A1144 -1 N LEU A1143 O VAL A1151 SHEET 7 AA2 7 ASP A1103 VAL A1107 -1 N TYR A1105 O LEU A1144 LINK SG CYS A1097 ZN ZN A1201 1555 1555 2.34 LINK SG CYS A1099 ZN ZN A1201 1555 1555 2.40 LINK SG CYS A1145 ZN ZN A1201 1555 1555 2.29 LINK ND1 HIS A1149 ZN ZN A1201 1555 1555 2.13 SITE 1 AC1 4 CYS A1097 CYS A1099 CYS A1145 HIS A1149 SITE 1 AC2 23 HIS A 982 GLN A1041 THR A1042 PHE A1043 SITE 2 AC2 23 HIS A1057 ASP A1081 ILE A1132 LEU A1135 SITE 3 AC2 23 LYS A1136 GLY A1137 SER A1138 SER A1139 SITE 4 AC2 23 PHE A1154 ARG A1155 THR A1156 ALA A1157 SITE 5 AC2 23 SO4 A1205 HOH A1318 HOH A1377 HOH A1386 SITE 6 AC2 23 HOH A1432 HOH A1433 HOH A1442 SITE 1 AC3 5 GLY A 980 MET A 983 LEU A1000 GLU A1032 SITE 2 AC3 5 GLY A1148 SITE 1 AC4 4 LYS A 989 THR A1040 ARG A1062 HOH A1368 SITE 1 AC5 9 TYR A1006 GLN A1008 TYR A1056 O31 A1202 SITE 2 AC5 9 HOH A1321 HOH A1340 HOH A1353 HOH A1397 SITE 3 AC5 9 HOH A1423 SITE 1 AC6 9 ARG A1109 HIS A1110 HOH A1311 HOH A1330 SITE 2 AC6 9 HOH A1374 HOH A1383 HOH A1426 HOH A1444 SITE 3 AC6 9 HOH A1448 CRYST1 54.793 58.601 59.890 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016697 0.00000