HEADER OXIDOREDUCTASE 27-DEC-19 6VDX TITLE CRYSTAL STRUCTURE OF DEHALOPEROXIDASE B IN COMPLEX WITH COFACTOR TITLE 2 MANGANESE(III)- PORPHYRIN AND SUBSTRATE TRICHLOROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHALOPEROXIDASE B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHITRITE ORNATA; SOURCE 3 ORGANISM_TAXID: 129555; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD(DE3)PLYSS KEYWDS HEME PEROXIDASE, PEROXYGENASE, HEME COFACTOR, OXYGEN BINDING, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.GHILADI,V.S.DE SERRANO,A.MCGUIRE,T.MALEWSCHIK REVDAT 3 03-APR-24 6VDX 1 REMARK REVDAT 2 06-MAR-24 6VDX 1 REMARK REVDAT 1 30-DEC-20 6VDX 0 JRNL AUTH A.H.MCGUIRE,A.R.PETIT,J.KANG,T.MALEWSCHIK,V.DE SERRANO, JRNL AUTH 2 L.M.CAREY,R.A.GHILADI JRNL TITL NONNATIVE HEME INCORPORATION INTO MULTIFUNCTIONAL GLOBIN JRNL TITL 2 INCREASES PEROXYGENASE ACTIVITY AN ORDER AND MAGNITUDE JRNL TITL 3 COMPARED TO NATIVE ENZYME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.159 REMARK 3 FREE R VALUE TEST SET COUNT : 2150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2831 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2135 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.91700 REMARK 3 B22 (A**2) : -0.55100 REMARK 3 B33 (A**2) : 2.46800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.584 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2818 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2457 ; 0.003 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3887 ; 2.583 ; 1.700 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5760 ; 1.610 ; 1.622 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 5.555 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;36.586 ;23.137 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;16.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.385 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3459 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 662 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 783 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 82 ; 0.266 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1375 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 180 ; 0.237 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.193 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1339 ; 3.418 ; 1.912 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1338 ; 3.417 ; 1.911 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1747 ; 4.235 ; 2.891 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1748 ; 4.234 ; 2.892 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1479 ; 4.193 ; 2.112 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1465 ; 4.192 ; 2.108 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2126 ; 5.158 ; 3.091 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2108 ; 5.153 ; 3.083 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5275 ; 7.871 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6VDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 44.642 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3XIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE MPEG 2000, 29 REMARK 280 -33%, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.68250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.81300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.79250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.81300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.68250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.79250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CD NE CZ NH1 NH2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 57 OE1 GLU B 57 2.04 REMARK 500 O HOH B 448 O HOH B 482 2.06 REMARK 500 O HOH B 413 O HOH B 486 2.14 REMARK 500 OE1 GLN B 88 O HOH B 402 2.16 REMARK 500 O ALA A 134 O HOH A 404 2.18 REMARK 500 OH TYR B 38 O1 T6C B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 44 O HOH B 449 2455 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 81 CB SER A 81 OG 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 47.78 -145.26 REMARK 500 ASP A 12 54.40 -147.19 REMARK 500 PHE A 35 56.93 -141.24 REMARK 500 ASP A 72 50.19 39.67 REMARK 500 ASP B 12 51.04 -143.41 REMARK 500 ASP B 12 50.82 -143.36 REMARK 500 PHE B 35 54.94 -145.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNR A 305 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 NE2 REMARK 620 2 MNR A 305 NA 95.7 REMARK 620 3 MNR A 305 NB 94.9 87.6 REMARK 620 4 MNR A 305 NC 96.6 167.2 87.8 REMARK 620 5 MNR A 305 ND 98.7 92.0 166.3 89.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MNR B 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 89 NE2 REMARK 620 2 MNR B 304 NA 98.7 REMARK 620 3 MNR B 304 NB 98.8 89.8 REMARK 620 4 MNR B 304 NC 96.3 165.0 87.8 REMARK 620 5 MNR B 304 ND 97.5 90.2 163.5 87.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues T6C A 301 and MNR A REMARK 800 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues T6C A 301 and MNR A REMARK 800 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues T6C B 301 and MNR B REMARK 800 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues T6C B 301 and MNR B REMARK 800 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues T6C B 301 and MNR B REMARK 800 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues T6C B 301 and MNR B REMARK 800 304 DBREF 6VDX A 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 DBREF 6VDX B 1 137 UNP Q9NAV7 Q9NAV7_9ANNE 2 138 SEQRES 1 A 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 A 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 A 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 A 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 A 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 A 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 A 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 A 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 A 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 A 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 A 137 LEU SER SER ALA GLY MET LYS SEQRES 1 B 137 GLY PHE LYS GLN ASP ILE ALA THR LEU ARG GLY ASP LEU SEQRES 2 B 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 B 137 LYS TYR PRO ASP GLU LYS ARG ASN PHE LYS ASN TYR VAL SEQRES 4 B 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 B 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 B 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 B 137 ASP ALA SER THR LEU VAL GLN MET LYS GLN HIS SER GLY SEQRES 8 B 137 LEU THR THR GLY ASN PHE GLU LYS LEU PHE VAL ALA LEU SEQRES 9 B 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 B 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 B 137 LEU SER SER ALA GLY MET LYS HET T6C A 301 10 HET EDO A 302 4 HET PEG A 303 7 HET EDO A 304 4 HET MNR A 305 43 HET SO4 A 306 5 HET SO4 A 307 5 HET T6C B 301 10 HET EDO B 302 4 HET EDO B 303 4 HET MNR B 304 43 HET SO4 B 305 5 HETNAM T6C 2,4,6-TRICHLOROPHENOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MNR PROTOPORPHYRIN IX CONTAINING MN HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 T6C 2(C6 H3 CL3 O) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 5 PEG C4 H10 O3 FORMUL 7 MNR 2(C34 H32 MN N4 O4 5+) FORMUL 8 SO4 3(O4 S 2-) FORMUL 15 HOH *186(H2 O) HELIX 1 AA1 GLY A 1 GLY A 11 1 11 HELIX 2 AA2 ASP A 12 TYR A 28 1 17 HELIX 3 AA3 PRO A 29 VAL A 39 5 11 HELIX 4 AA4 SER A 42 LYS A 47 1 6 HELIX 5 AA5 MET A 49 ALA A 70 1 22 HELIX 6 AA6 LEU A 76 MET A 86 1 11 HELIX 7 AA7 LYS A 87 SER A 90 5 4 HELIX 8 AA8 THR A 93 SER A 111 1 19 HELIX 9 AA9 ASP A 116 ALA A 134 1 19 HELIX 10 AB1 PHE B 2 ASP B 12 1 11 HELIX 11 AB2 ASP B 12 TYR B 28 1 17 HELIX 12 AB3 PRO B 29 ASN B 34 5 6 HELIX 13 AB4 PHE B 35 VAL B 39 5 5 HELIX 14 AB5 SER B 42 SER B 48 1 7 HELIX 15 AB6 MET B 49 ALA B 70 1 22 HELIX 16 AB7 LEU B 76 MET B 86 1 11 HELIX 17 AB8 LYS B 87 SER B 90 5 4 HELIX 18 AB9 THR B 93 SER B 111 1 19 HELIX 19 AC1 ASP B 116 ALA B 134 1 19 LINK C6 T6C A 301 O2D MNR A 305 1555 1555 1.50 LINK C6 T6C A 301 CGD MNR A 305 1555 1555 1.53 LINK CL2 T6C B 301 CBD MNR B 304 1555 1555 1.57 LINK CL2 T6C B 301 O2D MNR B 304 1555 1555 1.53 LINK C2 T6C B 301 CGD MNR B 304 1555 1555 1.50 LINK C2 T6C B 301 O1D MNR B 304 1555 1555 1.37 LINK NE2 HIS A 89 MN MNR A 305 1555 1555 2.30 LINK NE2 HIS B 89 MN MNR B 304 1555 1555 2.19 SITE 1 AC1 6 GLN A 4 ASP A 5 THR A 8 SER A 114 SITE 2 AC1 6 HOH A 407 HOH B 411 SITE 1 AC2 9 THR A 93 THR A 94 GLY A 95 LYS A 99 SITE 2 AC2 9 LYS A 137 THR B 93 GLY B 95 GLU B 98 SITE 3 AC2 9 LYS B 99 SITE 1 AC3 8 VAL A 74 PRO A 75 ASN A 126 SER A 129 SITE 2 AC3 8 ALA A 130 HOH A 428 HOH A 451 THR B 71 SITE 1 AC4 9 LYS A 32 VAL A 39 GLY A 40 HOH A 444 SITE 2 AC4 9 GLY B 1 PHE B 2 LYS B 3 HOH B 465 SITE 3 AC4 9 HOH B 475 SITE 1 AC5 9 GLN A 44 LEU A 62 GLU A 65 ARG A 69 SITE 2 AC5 9 HOH A 402 HOH A 408 HOH A 458 HOH A 476 SITE 3 AC5 9 ALA B 7 SITE 1 AC6 5 HOH A 416 ASP B 5 THR B 8 SER B 114 SITE 2 AC6 5 HOH B 437 SITE 1 AC7 7 ALA A 7 GLN B 44 LEU B 62 GLU B 65 SITE 2 AC7 7 ARG B 69 HOH B 442 HOH B 446 SITE 1 AC8 9 GLY A 1 PHE A 2 LYS A 3 HOH A 429 SITE 2 AC8 9 HOH A 462 HOH A 465 LYS B 32 VAL B 39 SITE 3 AC8 9 GLY B 40 SITE 1 AC9 19 PHE A 21 PHE A 24 GLU A 31 ASN A 34 SITE 2 AC9 19 PHE A 35 TYR A 38 HIS A 55 THR A 56 SITE 3 AC9 19 LYS A 58 VAL A 59 MET A 63 LEU A 83 SITE 4 AC9 19 MET A 86 GLN A 88 HIS A 89 LEU A 92 SITE 5 AC9 19 ASN A 96 PHE A 97 LEU A 127 SITE 1 AD1 19 PHE A 21 PHE A 24 GLU A 31 ASN A 34 SITE 2 AD1 19 PHE A 35 TYR A 38 HIS A 55 THR A 56 SITE 3 AD1 19 LYS A 58 VAL A 59 MET A 63 LEU A 83 SITE 4 AD1 19 MET A 86 GLN A 88 HIS A 89 LEU A 92 SITE 5 AD1 19 ASN A 96 PHE A 97 LEU A 127 SITE 1 AD2 19 PHE B 21 PHE B 24 GLU B 31 ASN B 34 SITE 2 AD2 19 PHE B 35 TYR B 38 HIS B 55 THR B 56 SITE 3 AD2 19 LYS B 58 VAL B 59 MET B 63 MET B 86 SITE 4 AD2 19 GLN B 88 HIS B 89 LEU B 92 ASN B 96 SITE 5 AD2 19 PHE B 97 HOH B 402 HOH B 413 SITE 1 AD3 19 PHE B 21 PHE B 24 GLU B 31 ASN B 34 SITE 2 AD3 19 PHE B 35 TYR B 38 HIS B 55 THR B 56 SITE 3 AD3 19 LYS B 58 VAL B 59 MET B 63 MET B 86 SITE 4 AD3 19 GLN B 88 HIS B 89 LEU B 92 ASN B 96 SITE 5 AD3 19 PHE B 97 HOH B 402 HOH B 413 SITE 1 AD4 19 PHE B 21 PHE B 24 GLU B 31 ASN B 34 SITE 2 AD4 19 PHE B 35 TYR B 38 HIS B 55 THR B 56 SITE 3 AD4 19 LYS B 58 VAL B 59 MET B 63 MET B 86 SITE 4 AD4 19 GLN B 88 HIS B 89 LEU B 92 ASN B 96 SITE 5 AD4 19 PHE B 97 HOH B 402 HOH B 413 SITE 1 AD5 19 PHE B 21 PHE B 24 GLU B 31 ASN B 34 SITE 2 AD5 19 PHE B 35 TYR B 38 HIS B 55 THR B 56 SITE 3 AD5 19 LYS B 58 VAL B 59 MET B 63 MET B 86 SITE 4 AD5 19 GLN B 88 HIS B 89 LEU B 92 ASN B 96 SITE 5 AD5 19 PHE B 97 HOH B 402 HOH B 413 CRYST1 59.365 67.585 67.626 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014787 0.00000