HEADER PROTEIN BINDING 28-DEC-19 6VE5 TITLE X-RAY STRUCTURE OF HUMAN REV7 IN COMPLEX WITH SHIELDIN3 (RESIDUES 41- TITLE 2 74) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOTIC ARREST DEFICIENT 2-LIKE PROTEIN 2,MAD2-LIKE PROTEIN COMPND 5 2,REV7 HOMOLOG,HREV7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SHIELDIN COMPLEX SUBUNIT 3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: REV7-INTERACTING NOVEL NHEJ REGULATOR 1,SHIELD COMPLEX COMPND 11 SUBUNIT 3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAD2L2, MAD2B, REV7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: SHLD3, FLJ26957, RINN1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS DNA DAMAGE RESPONSE, DNA DOUBLE-STRAND BREAK REPAIR, DNA END KEYWDS 2 RESECTION, HOMOLOGOUS RECOMBINATION, NON-HOMOLOGOUS END JOINING, KEYWDS 3 SHIELDIN3, SHLD3, RINN1, REV7, 53BP1, RIF1, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.CUI,M.V.BOTUYAN,G.MER REVDAT 5 11-OCT-23 6VE5 1 REMARK REVDAT 4 28-JUL-21 6VE5 1 JRNL REVDAT 3 14-JUL-21 6VE5 1 JRNL REVDAT 2 30-JUN-21 6VE5 1 JRNL REVDAT 1 13-JAN-21 6VE5 0 JRNL AUTH C.DU TRUONG,T.A.CRAIG,G.CUI,M.V.BOTUYAN,R.A.SERKASEVICH, JRNL AUTH 2 K.Y.CHAN,G.MER,P.L.CHIU,R.KUMAR JRNL TITL CRYO-EM REVEALS CONFORMATIONAL FLEXIBILITY IN APO DNA JRNL TITL 2 POLYMERASE ZETA. JRNL REF J.BIOL.CHEM. V. 297 00912 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34174285 JRNL DOI 10.1016/J.JBC.2021.100912 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 19167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2500 - 4.8000 0.97 1326 151 0.2293 0.2452 REMARK 3 2 4.8000 - 3.8100 0.99 1274 145 0.1588 0.1735 REMARK 3 3 3.8100 - 3.3300 0.99 1242 143 0.1861 0.2108 REMARK 3 4 3.3300 - 3.0300 0.99 1246 141 0.1987 0.2132 REMARK 3 5 3.0300 - 2.8100 0.99 1253 134 0.2128 0.2262 REMARK 3 6 2.8100 - 2.6500 0.98 1210 134 0.2262 0.2900 REMARK 3 7 2.6500 - 2.5100 0.97 1187 132 0.2507 0.3074 REMARK 3 8 2.5100 - 2.4000 0.98 1218 134 0.2418 0.3088 REMARK 3 9 2.4000 - 2.3100 0.97 1195 134 0.2321 0.2468 REMARK 3 10 2.3100 - 2.2300 0.99 1232 133 0.2488 0.2650 REMARK 3 11 2.2300 - 2.1600 0.99 1213 132 0.2437 0.2899 REMARK 3 12 2.1600 - 2.1000 1.00 1247 140 0.2472 0.2424 REMARK 3 13 2.1000 - 2.0500 1.00 1198 134 0.2764 0.2853 REMARK 3 14 2.0500 - 2.0000 0.99 1207 132 0.2978 0.3167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.208 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.088 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1867 REMARK 3 ANGLE : 0.652 2545 REMARK 3 CHIRALITY : 0.047 305 REMARK 3 PLANARITY : 0.003 321 REMARK 3 DIHEDRAL : 11.935 697 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1334 25.4568 3.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1329 REMARK 3 T33: 0.1688 T12: 0.0322 REMARK 3 T13: -0.0185 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.3213 L22: 1.7500 REMARK 3 L33: 3.2807 L12: 0.0879 REMARK 3 L13: 0.1447 L23: -0.1766 REMARK 3 S TENSOR REMARK 3 S11: 0.1743 S12: 0.2445 S13: 0.1637 REMARK 3 S21: -0.0142 S22: -0.0357 S23: -0.1278 REMARK 3 S31: -0.1700 S32: 0.2315 S33: -0.1248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3856 13.4926 10.1018 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.2596 REMARK 3 T33: 0.2428 T12: 0.0499 REMARK 3 T13: -0.1181 T23: -0.0914 REMARK 3 L TENSOR REMARK 3 L11: 6.9857 L22: 5.0571 REMARK 3 L33: 6.0825 L12: -2.1978 REMARK 3 L13: -2.9178 L23: 1.4198 REMARK 3 S TENSOR REMARK 3 S11: -0.0690 S12: 0.4020 S13: -0.8427 REMARK 3 S21: 0.3362 S22: 0.0205 S23: -0.0064 REMARK 3 S31: 0.8235 S32: 0.0635 S33: 0.0536 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0524 31.8969 16.3892 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.2953 REMARK 3 T33: 0.3270 T12: -0.0502 REMARK 3 T13: 0.0140 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 3.2789 L22: 4.1658 REMARK 3 L33: 5.4114 L12: 0.3918 REMARK 3 L13: -2.4699 L23: -0.0666 REMARK 3 S TENSOR REMARK 3 S11: 0.4820 S12: -0.2897 S13: 0.8519 REMARK 3 S21: 0.2005 S22: -0.0011 S23: 0.2399 REMARK 3 S31: -0.6057 S32: -0.1085 S33: -0.3743 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5436 13.8468 10.7223 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2474 REMARK 3 T33: 0.2597 T12: 0.0650 REMARK 3 T13: -0.0782 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 4.5227 L22: 2.8147 REMARK 3 L33: 3.4531 L12: 0.7787 REMARK 3 L13: 1.7691 L23: 0.3081 REMARK 3 S TENSOR REMARK 3 S11: 0.3668 S12: -0.2152 S13: -0.6408 REMARK 3 S21: 0.1810 S22: -0.0052 S23: -0.1746 REMARK 3 S31: 0.5784 S32: 0.2856 S33: -0.1395 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3441 9.7397 0.3078 REMARK 3 T TENSOR REMARK 3 T11: 0.3501 T22: 0.2320 REMARK 3 T33: 0.3900 T12: 0.0890 REMARK 3 T13: -0.1245 T23: -0.1495 REMARK 3 L TENSOR REMARK 3 L11: 4.8889 L22: 5.7701 REMARK 3 L33: 8.5182 L12: 2.3429 REMARK 3 L13: -4.0102 L23: -4.5592 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: 0.6807 S13: -0.7692 REMARK 3 S21: -0.0797 S22: -0.0132 S23: -0.2604 REMARK 3 S31: 0.7008 S32: -0.1848 S33: 0.1415 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4067 26.9009 -15.7497 REMARK 3 T TENSOR REMARK 3 T11: 0.4299 T22: 0.9728 REMARK 3 T33: 0.3593 T12: -0.2482 REMARK 3 T13: 0.0715 T23: 0.1631 REMARK 3 L TENSOR REMARK 3 L11: 0.7695 L22: 6.9833 REMARK 3 L33: 7.2714 L12: -0.1323 REMARK 3 L13: -0.3661 L23: 0.4127 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.3149 S13: 0.4035 REMARK 3 S21: -1.1004 S22: 0.3814 S23: -0.9281 REMARK 3 S31: -0.5302 S32: 1.5666 S33: 0.4790 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SAGITTAL FOCUSING 2ND CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19399 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 22.60 REMARK 200 R MERGE (I) : 0.08271 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.19300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3ABD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN COMPLEX WAS IN 5 MM HEPES, PH REMARK 280 7.4, 100 MM NACL, 5 MM DDT AT 25 MG/ML;RESERVOIR SOLUTION WAS REMARK 280 0.1 M MES MONOHYDRATE, PH 6.5, 1.4 M MGSO4.6H20;CRYOPROTECTION REMARK 280 WAS DONE IN 50% PEG 400, VAPOR DIFFUSION, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.31333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.15667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.15667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.31333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 THR A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 209 REMARK 465 GLY A 210 REMARK 465 SER A 211 REMARK 465 MET B 40 REMARK 465 TRP B 41 REMARK 465 PHE B 42 REMARK 465 PRO B 43 REMARK 465 TYR B 44 REMARK 465 ASP B 45 REMARK 465 GLY B 46 REMARK 465 SER B 47 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 118 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 HIS A 208 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101 DBREF 6VE5 A 1 211 UNP Q9UI95 MD2L2_HUMAN 1 211 DBREF 6VE5 B 41 74 UNP Q6ZNX1 SHLD3_HUMAN 41 74 SEQADV 6VE5 GLY A -3 UNP Q9UI95 EXPRESSION TAG SEQADV 6VE5 PRO A -2 UNP Q9UI95 EXPRESSION TAG SEQADV 6VE5 GLY A -1 UNP Q9UI95 EXPRESSION TAG SEQADV 6VE5 HIS A 0 UNP Q9UI95 EXPRESSION TAG SEQADV 6VE5 ALA A 124 UNP Q9UI95 ARG 124 CONFLICT SEQADV 6VE5 MET B 40 UNP Q6ZNX1 INITIATING METHIONINE SEQRES 1 A 215 GLY PRO GLY HIS MET THR THR LEU THR ARG GLN ASP LEU SEQRES 2 A 215 ASN PHE GLY GLN VAL VAL ALA ASP VAL LEU CYS GLU PHE SEQRES 3 A 215 LEU GLU VAL ALA VAL HIS LEU ILE LEU TYR VAL ARG GLU SEQRES 4 A 215 VAL TYR PRO VAL GLY ILE PHE GLN LYS ARG LYS LYS TYR SEQRES 5 A 215 ASN VAL PRO VAL GLN MET SER CYS HIS PRO GLU LEU ASN SEQRES 6 A 215 GLN TYR ILE GLN ASP THR LEU HIS CYS VAL LYS PRO LEU SEQRES 7 A 215 LEU GLU LYS ASN ASP VAL GLU LYS VAL VAL VAL VAL ILE SEQRES 8 A 215 LEU ASP LYS GLU HIS ARG PRO VAL GLU LYS PHE VAL PHE SEQRES 9 A 215 GLU ILE THR GLN PRO PRO LEU LEU SER ILE SER SER ASP SEQRES 10 A 215 SER LEU LEU SER HIS VAL GLU GLN LEU LEU ALA ALA PHE SEQRES 11 A 215 ILE LEU LYS ILE SER VAL CYS ASP ALA VAL LEU ASP HIS SEQRES 12 A 215 ASN PRO PRO GLY CYS THR PHE THR VAL LEU VAL HIS THR SEQRES 13 A 215 ARG GLU ALA ALA THR ARG ASN MET GLU LYS ILE GLN VAL SEQRES 14 A 215 ILE LYS ASP PHE PRO TRP ILE LEU ALA ASP GLU GLN ASP SEQRES 15 A 215 VAL HIS MET HIS ASP PRO ARG LEU ILE PRO LEU LYS THR SEQRES 16 A 215 MET THR SER ASP ILE LEU LYS MET GLN LEU TYR VAL GLU SEQRES 17 A 215 GLU ARG ALA HIS LYS GLY SER SEQRES 1 B 35 MET TRP PHE PRO TYR ASP GLY SER LYS LEU PRO LEU ARG SEQRES 2 B 35 PRO LYS ARG SER PRO PRO VAL ILE SER GLU GLU ALA ALA SEQRES 3 B 35 GLU ASP VAL LYS GLN TYR LEU THR ILE HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 101 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *184(H2 O) HELIX 1 AA1 ASN A 10 ARG A 34 1 25 HELIX 2 AA2 PRO A 38 GLY A 40 5 3 HELIX 3 AA3 HIS A 57 LYS A 77 1 21 HELIX 4 AA4 SER A 114 CYS A 133 1 20 HELIX 5 AA5 ASP A 134 VAL A 136 5 3 HELIX 6 AA6 ARG A 158 ILE A 163 1 6 HELIX 7 AA7 ASP A 175 HIS A 180 1 6 HELIX 8 AA8 SER B 61 LEU B 72 1 12 SHEET 1 AA1 2 PHE A 42 LYS A 47 0 SHEET 2 AA1 2 VAL A 50 SER A 55 -1 O VAL A 52 N ARG A 45 SHEET 1 AA2 5 THR A 145 THR A 152 0 SHEET 2 AA2 5 VAL A 80 LEU A 88 -1 N GLU A 81 O HIS A 151 SHEET 3 AA2 5 PRO A 94 THR A 103 -1 O VAL A 95 N ILE A 87 SHEET 4 AA2 5 LYS A 198 GLU A 205 -1 O LYS A 198 N THR A 103 SHEET 5 AA2 5 ARG A 185 THR A 193 -1 N LYS A 190 O LEU A 201 SHEET 1 AA3 2 TRP A 171 LEU A 173 0 SHEET 2 AA3 2 LEU B 51 PRO B 53 -1 O ARG B 52 N ILE A 172 SITE 1 AC1 2 ASN A 78 HOH A 478 SITE 1 AC2 4 LYS A 190 THR A 191 HOH A 412 HOH A 496 SITE 1 AC3 2 ARG B 55 SER B 56 CRYST1 59.990 59.990 132.470 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016669 0.009624 0.000000 0.00000 SCALE2 0.000000 0.019248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007549 0.00000