data_6VFJ # _entry.id 6VFJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VFJ pdb_00006vfj 10.2210/pdb6vfj/pdb WWPDB D_1000246116 ? ? EMDB EMD-21174 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-12 2 'Structure model' 1 1 2020-08-19 3 'Structure model' 1 2 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.pdbx_database_id_DOI' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' 7 3 'Structure model' '_pdbx_struct_oper_list.name' 8 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 9 3 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VFJ _pdbx_database_status.recvd_initial_deposition_date 2020-01-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'De novo designed icosahedral nanoparticle I53_dn5' _pdbx_database_related.db_id EMD-21174 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Antanasijevic, A.' 1 0000-0001-9452-8954 'Ward, A.B.' 2 0000-0001-7153-3769 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.57659 _citation.pdbx_database_id_PubMed 32748788 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ueda, G.' 1 0000-0002-9792-7149 primary 'Antanasijevic, A.' 2 0000-0001-9452-8954 primary 'Fallas, J.A.' 3 ? primary 'Sheffler, W.' 4 ? primary 'Copps, J.' 5 ? primary 'Ellis, D.' 6 ? primary 'Hutchinson, G.B.' 7 ? primary 'Moyer, A.' 8 ? primary 'Yasmeen, A.' 9 ? primary 'Tsybovsky, Y.' 10 ? primary 'Park, Y.J.' 11 ? primary 'Bick, M.J.' 12 0000-0002-9585-859X primary 'Sankaran, B.' 13 ? primary 'Gillespie, R.A.' 14 ? primary 'Brouwer, P.J.' 15 0000-0002-2902-7739 primary 'Zwart, P.H.' 16 ? primary 'Veesler, D.' 17 0000-0002-6019-8675 primary 'Kanekiyo, M.' 18 ? primary 'Graham, B.S.' 19 0000-0001-8112-0853 primary 'Sanders, R.W.' 20 ? primary 'Moore, J.P.' 21 ? primary 'Klasse, P.J.' 22 0000-0001-8222-278X primary 'Ward, A.B.' 23 0000-0001-7153-3769 primary 'King, N.P.' 24 ? primary 'Baker, D.' 25 0000-0001-7896-6217 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man I53_dn5B 15356.009 1 ? ? ? ? 2 polymer man I53_dn5A 17215.148 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGRYREAIEYYQKALELDPNNAEAWYNLGN AYYERGEYEEAIEYYRKALRLDPNNADAMQNLLNAKMREELEHHHHHH ; ;MEEAELAYLLGELAYKLGEYRIAIRAYRIALKRDPNNAEAWYNLGNAYYKQGRYREAIEYYQKALELDPNNAEAWYNLGN AYYERGEYEEAIEYYRKALRLDPNNADAMQNLLNAKMREELEHHHHHH ; B ? 2 'polypeptide(L)' no no ;MGKYDGSKLRIGILHARWNAEIILALVLGALKRLQEFGVKRENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIG VLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFN ; ;MGKYDGSKLRIGILHARWNAEIILALVLGALKRLQEFGVKRENIIIETVPGSFELPYGSKLFVEKQKRLGKPLDAIIPIG VLIKGSTMHFEYICDSTTHQLMKLNFELGIPVIFGVLTCLTDEQAEARAGLIEGKMHNHGEDWGAAAVEMATKFN ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 GLU n 1 4 ALA n 1 5 GLU n 1 6 LEU n 1 7 ALA n 1 8 TYR n 1 9 LEU n 1 10 LEU n 1 11 GLY n 1 12 GLU n 1 13 LEU n 1 14 ALA n 1 15 TYR n 1 16 LYS n 1 17 LEU n 1 18 GLY n 1 19 GLU n 1 20 TYR n 1 21 ARG n 1 22 ILE n 1 23 ALA n 1 24 ILE n 1 25 ARG n 1 26 ALA n 1 27 TYR n 1 28 ARG n 1 29 ILE n 1 30 ALA n 1 31 LEU n 1 32 LYS n 1 33 ARG n 1 34 ASP n 1 35 PRO n 1 36 ASN n 1 37 ASN n 1 38 ALA n 1 39 GLU n 1 40 ALA n 1 41 TRP n 1 42 TYR n 1 43 ASN n 1 44 LEU n 1 45 GLY n 1 46 ASN n 1 47 ALA n 1 48 TYR n 1 49 TYR n 1 50 LYS n 1 51 GLN n 1 52 GLY n 1 53 ARG n 1 54 TYR n 1 55 ARG n 1 56 GLU n 1 57 ALA n 1 58 ILE n 1 59 GLU n 1 60 TYR n 1 61 TYR n 1 62 GLN n 1 63 LYS n 1 64 ALA n 1 65 LEU n 1 66 GLU n 1 67 LEU n 1 68 ASP n 1 69 PRO n 1 70 ASN n 1 71 ASN n 1 72 ALA n 1 73 GLU n 1 74 ALA n 1 75 TRP n 1 76 TYR n 1 77 ASN n 1 78 LEU n 1 79 GLY n 1 80 ASN n 1 81 ALA n 1 82 TYR n 1 83 TYR n 1 84 GLU n 1 85 ARG n 1 86 GLY n 1 87 GLU n 1 88 TYR n 1 89 GLU n 1 90 GLU n 1 91 ALA n 1 92 ILE n 1 93 GLU n 1 94 TYR n 1 95 TYR n 1 96 ARG n 1 97 LYS n 1 98 ALA n 1 99 LEU n 1 100 ARG n 1 101 LEU n 1 102 ASP n 1 103 PRO n 1 104 ASN n 1 105 ASN n 1 106 ALA n 1 107 ASP n 1 108 ALA n 1 109 MET n 1 110 GLN n 1 111 ASN n 1 112 LEU n 1 113 LEU n 1 114 ASN n 1 115 ALA n 1 116 LYS n 1 117 MET n 1 118 ARG n 1 119 GLU n 1 120 GLU n 1 121 LEU n 1 122 GLU n 1 123 HIS n 1 124 HIS n 1 125 HIS n 1 126 HIS n 1 127 HIS n 1 128 HIS n 2 1 MET n 2 2 GLY n 2 3 LYS n 2 4 TYR n 2 5 ASP n 2 6 GLY n 2 7 SER n 2 8 LYS n 2 9 LEU n 2 10 ARG n 2 11 ILE n 2 12 GLY n 2 13 ILE n 2 14 LEU n 2 15 HIS n 2 16 ALA n 2 17 ARG n 2 18 TRP n 2 19 ASN n 2 20 ALA n 2 21 GLU n 2 22 ILE n 2 23 ILE n 2 24 LEU n 2 25 ALA n 2 26 LEU n 2 27 VAL n 2 28 LEU n 2 29 GLY n 2 30 ALA n 2 31 LEU n 2 32 LYS n 2 33 ARG n 2 34 LEU n 2 35 GLN n 2 36 GLU n 2 37 PHE n 2 38 GLY n 2 39 VAL n 2 40 LYS n 2 41 ARG n 2 42 GLU n 2 43 ASN n 2 44 ILE n 2 45 ILE n 2 46 ILE n 2 47 GLU n 2 48 THR n 2 49 VAL n 2 50 PRO n 2 51 GLY n 2 52 SER n 2 53 PHE n 2 54 GLU n 2 55 LEU n 2 56 PRO n 2 57 TYR n 2 58 GLY n 2 59 SER n 2 60 LYS n 2 61 LEU n 2 62 PHE n 2 63 VAL n 2 64 GLU n 2 65 LYS n 2 66 GLN n 2 67 LYS n 2 68 ARG n 2 69 LEU n 2 70 GLY n 2 71 LYS n 2 72 PRO n 2 73 LEU n 2 74 ASP n 2 75 ALA n 2 76 ILE n 2 77 ILE n 2 78 PRO n 2 79 ILE n 2 80 GLY n 2 81 VAL n 2 82 LEU n 2 83 ILE n 2 84 LYS n 2 85 GLY n 2 86 SER n 2 87 THR n 2 88 MET n 2 89 HIS n 2 90 PHE n 2 91 GLU n 2 92 TYR n 2 93 ILE n 2 94 CYS n 2 95 ASP n 2 96 SER n 2 97 THR n 2 98 THR n 2 99 HIS n 2 100 GLN n 2 101 LEU n 2 102 MET n 2 103 LYS n 2 104 LEU n 2 105 ASN n 2 106 PHE n 2 107 GLU n 2 108 LEU n 2 109 GLY n 2 110 ILE n 2 111 PRO n 2 112 VAL n 2 113 ILE n 2 114 PHE n 2 115 GLY n 2 116 VAL n 2 117 LEU n 2 118 THR n 2 119 CYS n 2 120 LEU n 2 121 THR n 2 122 ASP n 2 123 GLU n 2 124 GLN n 2 125 ALA n 2 126 GLU n 2 127 ALA n 2 128 ARG n 2 129 ALA n 2 130 GLY n 2 131 LEU n 2 132 ILE n 2 133 GLU n 2 134 GLY n 2 135 LYS n 2 136 MET n 2 137 HIS n 2 138 ASN n 2 139 HIS n 2 140 GLY n 2 141 GLU n 2 142 ASP n 2 143 TRP n 2 144 GLY n 2 145 ALA n 2 146 ALA n 2 147 ALA n 2 148 VAL n 2 149 GLU n 2 150 MET n 2 151 ALA n 2 152 THR n 2 153 LYS n 2 154 PHE n 2 155 ASN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 128 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 155 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 ? ? ? B . n A 1 2 GLU 2 1 1 GLU GLU B . n A 1 3 GLU 3 2 2 GLU GLU B . n A 1 4 ALA 4 3 3 ALA ALA B . n A 1 5 GLU 5 4 4 GLU GLU B . n A 1 6 LEU 6 5 5 LEU LEU B . n A 1 7 ALA 7 6 6 ALA ALA B . n A 1 8 TYR 8 7 7 TYR TYR B . n A 1 9 LEU 9 8 8 LEU LEU B . n A 1 10 LEU 10 9 9 LEU LEU B . n A 1 11 GLY 11 10 10 GLY GLY B . n A 1 12 GLU 12 11 11 GLU GLU B . n A 1 13 LEU 13 12 12 LEU LEU B . n A 1 14 ALA 14 13 13 ALA ALA B . n A 1 15 TYR 15 14 14 TYR TYR B . n A 1 16 LYS 16 15 15 LYS LYS B . n A 1 17 LEU 17 16 16 LEU LEU B . n A 1 18 GLY 18 17 17 GLY GLY B . n A 1 19 GLU 19 18 18 GLU GLU B . n A 1 20 TYR 20 19 19 TYR TYR B . n A 1 21 ARG 21 20 20 ARG ARG B . n A 1 22 ILE 22 21 21 ILE ILE B . n A 1 23 ALA 23 22 22 ALA ALA B . n A 1 24 ILE 24 23 23 ILE ILE B . n A 1 25 ARG 25 24 24 ARG ARG B . n A 1 26 ALA 26 25 25 ALA ALA B . n A 1 27 TYR 27 26 26 TYR TYR B . n A 1 28 ARG 28 27 27 ARG ARG B . n A 1 29 ILE 29 28 28 ILE ILE B . n A 1 30 ALA 30 29 29 ALA ALA B . n A 1 31 LEU 31 30 30 LEU LEU B . n A 1 32 LYS 32 31 31 LYS LYS B . n A 1 33 ARG 33 32 32 ARG ARG B . n A 1 34 ASP 34 33 33 ASP ASP B . n A 1 35 PRO 35 34 34 PRO PRO B . n A 1 36 ASN 36 35 35 ASN ASN B . n A 1 37 ASN 37 36 36 ASN ASN B . n A 1 38 ALA 38 37 37 ALA ALA B . n A 1 39 GLU 39 38 38 GLU GLU B . n A 1 40 ALA 40 39 39 ALA ALA B . n A 1 41 TRP 41 40 40 TRP TRP B . n A 1 42 TYR 42 41 41 TYR TYR B . n A 1 43 ASN 43 42 42 ASN ASN B . n A 1 44 LEU 44 43 43 LEU LEU B . n A 1 45 GLY 45 44 44 GLY GLY B . n A 1 46 ASN 46 45 45 ASN ASN B . n A 1 47 ALA 47 46 46 ALA ALA B . n A 1 48 TYR 48 47 47 TYR TYR B . n A 1 49 TYR 49 48 48 TYR TYR B . n A 1 50 LYS 50 49 49 LYS LYS B . n A 1 51 GLN 51 50 50 GLN GLN B . n A 1 52 GLY 52 51 51 GLY GLY B . n A 1 53 ARG 53 52 52 ARG ARG B . n A 1 54 TYR 54 53 53 TYR TYR B . n A 1 55 ARG 55 54 54 ARG ARG B . n A 1 56 GLU 56 55 55 GLU GLU B . n A 1 57 ALA 57 56 56 ALA ALA B . n A 1 58 ILE 58 57 57 ILE ILE B . n A 1 59 GLU 59 58 58 GLU GLU B . n A 1 60 TYR 60 59 59 TYR TYR B . n A 1 61 TYR 61 60 60 TYR TYR B . n A 1 62 GLN 62 61 61 GLN GLN B . n A 1 63 LYS 63 62 62 LYS LYS B . n A 1 64 ALA 64 63 63 ALA ALA B . n A 1 65 LEU 65 64 64 LEU LEU B . n A 1 66 GLU 66 65 65 GLU GLU B . n A 1 67 LEU 67 66 66 LEU LEU B . n A 1 68 ASP 68 67 67 ASP ASP B . n A 1 69 PRO 69 68 68 PRO PRO B . n A 1 70 ASN 70 69 69 ASN ASN B . n A 1 71 ASN 71 70 70 ASN ASN B . n A 1 72 ALA 72 71 71 ALA ALA B . n A 1 73 GLU 73 72 72 GLU GLU B . n A 1 74 ALA 74 73 73 ALA ALA B . n A 1 75 TRP 75 74 74 TRP TRP B . n A 1 76 TYR 76 75 75 TYR TYR B . n A 1 77 ASN 77 76 76 ASN ASN B . n A 1 78 LEU 78 77 77 LEU LEU B . n A 1 79 GLY 79 78 78 GLY GLY B . n A 1 80 ASN 80 79 79 ASN ASN B . n A 1 81 ALA 81 80 80 ALA ALA B . n A 1 82 TYR 82 81 81 TYR TYR B . n A 1 83 TYR 83 82 82 TYR TYR B . n A 1 84 GLU 84 83 83 GLU GLU B . n A 1 85 ARG 85 84 84 ARG ARG B . n A 1 86 GLY 86 85 85 GLY GLY B . n A 1 87 GLU 87 86 86 GLU GLU B . n A 1 88 TYR 88 87 87 TYR TYR B . n A 1 89 GLU 89 88 88 GLU GLU B . n A 1 90 GLU 90 89 89 GLU GLU B . n A 1 91 ALA 91 90 90 ALA ALA B . n A 1 92 ILE 92 91 91 ILE ILE B . n A 1 93 GLU 93 92 92 GLU GLU B . n A 1 94 TYR 94 93 93 TYR TYR B . n A 1 95 TYR 95 94 94 TYR TYR B . n A 1 96 ARG 96 95 95 ARG ARG B . n A 1 97 LYS 97 96 96 LYS LYS B . n A 1 98 ALA 98 97 97 ALA ALA B . n A 1 99 LEU 99 98 98 LEU LEU B . n A 1 100 ARG 100 99 99 ARG ARG B . n A 1 101 LEU 101 100 100 LEU LEU B . n A 1 102 ASP 102 101 101 ASP ASP B . n A 1 103 PRO 103 102 102 PRO PRO B . n A 1 104 ASN 104 103 103 ASN ASN B . n A 1 105 ASN 105 104 104 ASN ASN B . n A 1 106 ALA 106 105 105 ALA ALA B . n A 1 107 ASP 107 106 106 ASP ASP B . n A 1 108 ALA 108 107 107 ALA ALA B . n A 1 109 MET 109 108 108 MET MET B . n A 1 110 GLN 110 109 109 GLN GLN B . n A 1 111 ASN 111 110 110 ASN ASN B . n A 1 112 LEU 112 111 111 LEU LEU B . n A 1 113 LEU 113 112 112 LEU LEU B . n A 1 114 ASN 114 113 113 ASN ASN B . n A 1 115 ALA 115 114 114 ALA ALA B . n A 1 116 LYS 116 115 115 LYS LYS B . n A 1 117 MET 117 116 116 MET MET B . n A 1 118 ARG 118 117 117 ARG ARG B . n A 1 119 GLU 119 118 118 GLU GLU B . n A 1 120 GLU 120 119 119 GLU GLU B . n A 1 121 LEU 121 120 ? ? ? B . n A 1 122 GLU 122 121 ? ? ? B . n A 1 123 HIS 123 122 ? ? ? B . n A 1 124 HIS 124 123 ? ? ? B . n A 1 125 HIS 125 124 ? ? ? B . n A 1 126 HIS 126 125 ? ? ? B . n A 1 127 HIS 127 126 ? ? ? B . n A 1 128 HIS 128 127 ? ? ? B . n B 2 1 MET 1 -1 ? ? ? A . n B 2 2 GLY 2 0 ? ? ? A . n B 2 3 LYS 3 1 1 LYS LYS A . n B 2 4 TYR 4 2 2 TYR TYR A . n B 2 5 ASP 5 3 3 ASP ASP A . n B 2 6 GLY 6 4 4 GLY GLY A . n B 2 7 SER 7 5 5 SER SER A . n B 2 8 LYS 8 6 6 LYS LYS A . n B 2 9 LEU 9 7 7 LEU LEU A . n B 2 10 ARG 10 8 8 ARG ARG A . n B 2 11 ILE 11 9 9 ILE ILE A . n B 2 12 GLY 12 10 10 GLY GLY A . n B 2 13 ILE 13 11 11 ILE ILE A . n B 2 14 LEU 14 12 12 LEU LEU A . n B 2 15 HIS 15 13 13 HIS HIS A . n B 2 16 ALA 16 14 14 ALA ALA A . n B 2 17 ARG 17 15 15 ARG ARG A . n B 2 18 TRP 18 16 16 TRP TRP A . n B 2 19 ASN 19 17 17 ASN ASN A . n B 2 20 ALA 20 18 18 ALA ALA A . n B 2 21 GLU 21 19 19 GLU GLU A . n B 2 22 ILE 22 20 20 ILE ILE A . n B 2 23 ILE 23 21 21 ILE ILE A . n B 2 24 LEU 24 22 22 LEU LEU A . n B 2 25 ALA 25 23 23 ALA ALA A . n B 2 26 LEU 26 24 24 LEU LEU A . n B 2 27 VAL 27 25 25 VAL VAL A . n B 2 28 LEU 28 26 26 LEU LEU A . n B 2 29 GLY 29 27 27 GLY GLY A . n B 2 30 ALA 30 28 28 ALA ALA A . n B 2 31 LEU 31 29 29 LEU LEU A . n B 2 32 LYS 32 30 30 LYS LYS A . n B 2 33 ARG 33 31 31 ARG ARG A . n B 2 34 LEU 34 32 32 LEU LEU A . n B 2 35 GLN 35 33 33 GLN GLN A . n B 2 36 GLU 36 34 34 GLU GLU A . n B 2 37 PHE 37 35 35 PHE PHE A . n B 2 38 GLY 38 36 36 GLY GLY A . n B 2 39 VAL 39 37 37 VAL VAL A . n B 2 40 LYS 40 38 38 LYS LYS A . n B 2 41 ARG 41 39 39 ARG ARG A . n B 2 42 GLU 42 40 40 GLU GLU A . n B 2 43 ASN 43 41 41 ASN ASN A . n B 2 44 ILE 44 42 42 ILE ILE A . n B 2 45 ILE 45 43 43 ILE ILE A . n B 2 46 ILE 46 44 44 ILE ILE A . n B 2 47 GLU 47 45 45 GLU GLU A . n B 2 48 THR 48 46 46 THR THR A . n B 2 49 VAL 49 47 47 VAL VAL A . n B 2 50 PRO 50 48 48 PRO PRO A . n B 2 51 GLY 51 49 49 GLY GLY A . n B 2 52 SER 52 50 50 SER SER A . n B 2 53 PHE 53 51 51 PHE PHE A . n B 2 54 GLU 54 52 52 GLU GLU A . n B 2 55 LEU 55 53 53 LEU LEU A . n B 2 56 PRO 56 54 54 PRO PRO A . n B 2 57 TYR 57 55 55 TYR TYR A . n B 2 58 GLY 58 56 56 GLY GLY A . n B 2 59 SER 59 57 57 SER SER A . n B 2 60 LYS 60 58 58 LYS LYS A . n B 2 61 LEU 61 59 59 LEU LEU A . n B 2 62 PHE 62 60 60 PHE PHE A . n B 2 63 VAL 63 61 61 VAL VAL A . n B 2 64 GLU 64 62 62 GLU GLU A . n B 2 65 LYS 65 63 63 LYS LYS A . n B 2 66 GLN 66 64 64 GLN GLN A . n B 2 67 LYS 67 65 65 LYS LYS A . n B 2 68 ARG 68 66 66 ARG ARG A . n B 2 69 LEU 69 67 67 LEU LEU A . n B 2 70 GLY 70 68 68 GLY GLY A . n B 2 71 LYS 71 69 69 LYS LYS A . n B 2 72 PRO 72 70 70 PRO PRO A . n B 2 73 LEU 73 71 71 LEU LEU A . n B 2 74 ASP 74 72 72 ASP ASP A . n B 2 75 ALA 75 73 73 ALA ALA A . n B 2 76 ILE 76 74 74 ILE ILE A . n B 2 77 ILE 77 75 75 ILE ILE A . n B 2 78 PRO 78 76 76 PRO PRO A . n B 2 79 ILE 79 77 77 ILE ILE A . n B 2 80 GLY 80 78 78 GLY GLY A . n B 2 81 VAL 81 79 79 VAL VAL A . n B 2 82 LEU 82 80 80 LEU LEU A . n B 2 83 ILE 83 81 81 ILE ILE A . n B 2 84 LYS 84 82 82 LYS LYS A . n B 2 85 GLY 85 83 83 GLY GLY A . n B 2 86 SER 86 84 84 SER SER A . n B 2 87 THR 87 85 85 THR THR A . n B 2 88 MET 88 86 86 MET MET A . n B 2 89 HIS 89 87 87 HIS HIS A . n B 2 90 PHE 90 88 88 PHE PHE A . n B 2 91 GLU 91 89 89 GLU GLU A . n B 2 92 TYR 92 90 90 TYR TYR A . n B 2 93 ILE 93 91 91 ILE ILE A . n B 2 94 CYS 94 92 92 CYS CYS A . n B 2 95 ASP 95 93 93 ASP ASP A . n B 2 96 SER 96 94 94 SER SER A . n B 2 97 THR 97 95 95 THR THR A . n B 2 98 THR 98 96 96 THR THR A . n B 2 99 HIS 99 97 97 HIS HIS A . n B 2 100 GLN 100 98 98 GLN GLN A . n B 2 101 LEU 101 99 99 LEU LEU A . n B 2 102 MET 102 100 100 MET MET A . n B 2 103 LYS 103 101 101 LYS LYS A . n B 2 104 LEU 104 102 102 LEU LEU A . n B 2 105 ASN 105 103 103 ASN ASN A . n B 2 106 PHE 106 104 104 PHE PHE A . n B 2 107 GLU 107 105 105 GLU GLU A . n B 2 108 LEU 108 106 106 LEU LEU A . n B 2 109 GLY 109 107 107 GLY GLY A . n B 2 110 ILE 110 108 108 ILE ILE A . n B 2 111 PRO 111 109 109 PRO PRO A . n B 2 112 VAL 112 110 110 VAL VAL A . n B 2 113 ILE 113 111 111 ILE ILE A . n B 2 114 PHE 114 112 112 PHE PHE A . n B 2 115 GLY 115 113 113 GLY GLY A . n B 2 116 VAL 116 114 114 VAL VAL A . n B 2 117 LEU 117 115 115 LEU LEU A . n B 2 118 THR 118 116 116 THR THR A . n B 2 119 CYS 119 117 117 CYS CYS A . n B 2 120 LEU 120 118 118 LEU LEU A . n B 2 121 THR 121 119 119 THR THR A . n B 2 122 ASP 122 120 120 ASP ASP A . n B 2 123 GLU 123 121 121 GLU GLU A . n B 2 124 GLN 124 122 122 GLN GLN A . n B 2 125 ALA 125 123 123 ALA ALA A . n B 2 126 GLU 126 124 124 GLU GLU A . n B 2 127 ALA 127 125 125 ALA ALA A . n B 2 128 ARG 128 126 126 ARG ARG A . n B 2 129 ALA 129 127 127 ALA ALA A . n B 2 130 GLY 130 128 128 GLY GLY A . n B 2 131 LEU 131 129 129 LEU LEU A . n B 2 132 ILE 132 130 130 ILE ILE A . n B 2 133 GLU 133 131 131 GLU GLU A . n B 2 134 GLY 134 132 132 GLY GLY A . n B 2 135 LYS 135 133 133 LYS LYS A . n B 2 136 MET 136 134 134 MET MET A . n B 2 137 HIS 137 135 135 HIS HIS A . n B 2 138 ASN 138 136 136 ASN ASN A . n B 2 139 HIS 139 137 137 HIS HIS A . n B 2 140 GLY 140 138 138 GLY GLY A . n B 2 141 GLU 141 139 139 GLU GLU A . n B 2 142 ASP 142 140 140 ASP ASP A . n B 2 143 TRP 143 141 141 TRP TRP A . n B 2 144 GLY 144 142 142 GLY GLY A . n B 2 145 ALA 145 143 143 ALA ALA A . n B 2 146 ALA 146 144 144 ALA ALA A . n B 2 147 ALA 147 145 145 ALA ALA A . n B 2 148 VAL 148 146 146 VAL VAL A . n B 2 149 GLU 149 147 147 GLU GLU A . n B 2 150 MET 150 148 148 MET MET A . n B 2 151 ALA 151 149 149 ALA ALA A . n B 2 152 THR 152 150 150 THR THR A . n B 2 153 LYS 153 151 151 LYS LYS A . n B 2 154 PHE 154 152 152 PHE PHE A . n B 2 155 ASN 155 153 153 ASN ASN A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VFJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6VFJ _struct.title 'De novo designed icosahedral nanoparticle I53_dn5' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VFJ _struct_keywords.text 'De novo, Nanoparticle, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6VFJ 6VFJ ? 1 ? 1 2 PDB 6VFJ 6VFJ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VFJ B 1 ? 128 ? 6VFJ 0 ? 127 ? 0 127 2 2 6VFJ A 1 ? 155 ? 6VFJ -1 ? 153 ? -1 153 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 120-meric 120 2 'icosahedral asymmetric unit' ? dimeric 2 3 'icosahedral pentamer' ? decameric 10 4 'icosahedral 23 hexamer' ? dodecameric 12 5 'icosahedral asymmetric unit, std point frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000000 0.00000000 1.00000000 -206.00000 1.00000000 0.00000000 0.00000000 -206.00000 0.00000000 1.00000000 0.00000000 -206.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 -127.31500 0.30901699 0.80901699 -0.50000000 78.68500 -0.80901699 0.50000000 0.30901699 206.00000 3 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 412.00000 4 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 206.00000 0.80901699 0.50000000 0.30901699 -127.31500 0.50000000 -0.30901699 -0.80901699 333.31500 5 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 206.00000 0.30901699 0.80901699 0.50000000 -127.31500 0.80901699 -0.50000000 0.30901699 78.68500 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 412.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 412.00000 7 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 539.31500 0.30901699 0.80901699 -0.50000000 78.68500 0.80901699 -0.50000000 -0.30901699 206.00000 8 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 412.00000 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 9 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 206.00000 0.80901699 0.50000000 0.30901699 -127.31500 -0.50000000 0.30901699 0.80901699 78.68500 10 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 206.00000 0.30901699 0.80901699 0.50000000 -127.31500 -0.80901699 0.50000000 -0.30901699 333.31500 11 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 412.00000 0.00000000 0.00000000 -1.00000000 412.00000 12 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 -127.31500 -0.30901699 -0.80901699 0.50000000 333.31500 0.80901699 -0.50000000 -0.30901699 206.00000 13 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 412.00000 0.50000000 -0.30901699 0.80901699 0.00000 14 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 206.00000 -0.80901699 -0.50000000 -0.30901699 539.31500 -0.50000000 0.30901699 0.80901699 78.68500 15 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 206.00000 -0.30901699 -0.80901699 -0.50000000 539.31500 -0.80901699 0.50000000 -0.30901699 333.31500 16 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 412.00000 0.00000000 -1.00000000 0.00000000 412.00000 0.00000000 0.00000000 1.00000000 0.00000 17 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 539.31500 -0.30901699 -0.80901699 0.50000000 333.31500 -0.80901699 0.50000000 0.30901699 206.00000 18 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 412.00000 -0.80901699 -0.50000000 0.30901699 412.00000 -0.50000000 0.30901699 -0.80901699 412.00000 19 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 206.00000 -0.80901699 -0.50000000 -0.30901699 539.31500 0.50000000 -0.30901699 -0.80901699 333.31500 20 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 206.00000 -0.30901699 -0.80901699 -0.50000000 539.31500 0.80901699 -0.50000000 0.30901699 78.68500 21 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 22 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 206.00000 0.50000000 0.30901699 0.80901699 -127.31500 0.30901699 0.80901699 -0.50000000 78.68500 23 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 412.00000 -0.30901699 0.80901699 0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 24 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 333.31500 -0.30901699 0.80901699 -0.50000000 206.00000 0.80901699 0.50000000 0.30901699 -127.31500 25 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 78.68500 0.50000000 0.30901699 -0.80901699 206.00000 0.30901699 0.80901699 0.50000000 -127.31500 26 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 412.00000 -1.00000000 0.00000000 0.00000000 412.00000 0.00000000 1.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 206.00000 -0.50000000 -0.30901699 -0.80901699 539.31500 0.30901699 0.80901699 -0.50000000 78.68500 28 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 412.00000 0.80901699 0.50000000 -0.30901699 0.00000 29 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 78.68500 0.30901699 -0.80901699 0.50000000 206.00000 0.80901699 0.50000000 0.30901699 -127.31500 30 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 333.31500 -0.50000000 -0.30901699 0.80901699 206.00000 0.30901699 0.80901699 0.50000000 -127.31500 31 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 412.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 412.00000 32 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 206.00000 0.50000000 0.30901699 0.80901699 -127.31500 -0.30901699 -0.80901699 0.50000000 333.31500 33 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 412.00000 34 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 78.68500 -0.30901699 0.80901699 -0.50000000 206.00000 -0.80901699 -0.50000000 -0.30901699 539.31500 35 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 333.31500 0.50000000 0.30901699 -0.80901699 206.00000 -0.30901699 -0.80901699 -0.50000000 539.31500 36 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 412.00000 0.00000000 -1.00000000 0.00000000 412.00000 37 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 206.00000 -0.50000000 -0.30901699 -0.80901699 539.31500 -0.30901699 -0.80901699 0.50000000 333.31500 38 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 412.00000 0.30901699 -0.80901699 -0.50000000 412.00000 -0.80901699 -0.50000000 0.30901699 412.00000 39 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 333.31500 0.30901699 -0.80901699 0.50000000 206.00000 -0.80901699 -0.50000000 -0.30901699 539.31500 40 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 78.68500 -0.50000000 -0.30901699 0.80901699 206.00000 -0.30901699 -0.80901699 -0.50000000 539.31500 41 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 42 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 78.68500 -0.80901699 0.50000000 0.30901699 206.00000 0.50000000 0.30901699 0.80901699 -127.31500 43 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 412.00000 -0.30901699 0.80901699 0.50000000 0.00000 44 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 -127.31500 0.50000000 -0.30901699 -0.80901699 333.31500 -0.30901699 0.80901699 -0.50000000 206.00000 45 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 -127.31500 0.80901699 -0.50000000 0.30901699 78.68500 0.50000000 0.30901699 -0.80901699 206.00000 46 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 412.00000 -1.00000000 0.00000000 0.00000000 412.00000 47 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 78.68500 0.80901699 -0.50000000 -0.30901699 206.00000 -0.50000000 -0.30901699 -0.80901699 539.31500 48 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 412.00000 49 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 -127.31500 -0.50000000 0.30901699 0.80901699 78.68500 0.30901699 -0.80901699 0.50000000 206.00000 50 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 -127.31500 -0.80901699 0.50000000 -0.30901699 333.31500 -0.50000000 -0.30901699 0.80901699 206.00000 51 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 412.00000 0.00000000 0.00000000 -1.00000000 412.00000 1.00000000 0.00000000 0.00000000 0.00000 52 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 333.31500 0.80901699 -0.50000000 -0.30901699 206.00000 0.50000000 0.30901699 0.80901699 -127.31500 53 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 412.00000 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 54 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 539.31500 -0.50000000 0.30901699 0.80901699 78.68500 -0.30901699 0.80901699 -0.50000000 206.00000 55 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 539.31500 -0.80901699 0.50000000 -0.30901699 333.31500 0.50000000 0.30901699 -0.80901699 206.00000 56 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 412.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 412.00000 57 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 333.31500 -0.80901699 0.50000000 0.30901699 206.00000 -0.50000000 -0.30901699 -0.80901699 539.31500 58 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 412.00000 -0.50000000 0.30901699 -0.80901699 412.00000 0.30901699 -0.80901699 -0.50000000 412.00000 59 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 539.31500 0.50000000 -0.30901699 -0.80901699 333.31500 0.30901699 -0.80901699 0.50000000 206.00000 60 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 539.31500 0.80901699 -0.50000000 0.30901699 78.68500 -0.50000000 -0.30901699 0.80901699 206.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 2 ? LEU A 17 ? GLU B 1 LEU B 16 1 ? 16 HELX_P HELX_P2 AA2 GLU A 19 ? ASP A 34 ? GLU B 18 ASP B 33 1 ? 16 HELX_P HELX_P3 AA3 ASN A 37 ? GLN A 51 ? ASN B 36 GLN B 50 1 ? 15 HELX_P HELX_P4 AA4 ARG A 53 ? ASP A 68 ? ARG B 52 ASP B 67 1 ? 16 HELX_P HELX_P5 AA5 ASN A 71 ? ARG A 85 ? ASN B 70 ARG B 84 1 ? 15 HELX_P HELX_P6 AA6 GLU A 87 ? ASP A 102 ? GLU B 86 ASP B 101 1 ? 16 HELX_P HELX_P7 AA7 ASN A 105 ? GLU A 120 ? ASN B 104 GLU B 119 1 ? 16 HELX_P HELX_P8 AA8 ASN B 19 ? PHE B 37 ? ASN A 17 PHE A 35 1 ? 19 HELX_P HELX_P9 AA9 LYS B 40 ? GLU B 42 ? LYS A 38 GLU A 40 5 ? 3 HELX_P HELX_P10 AB1 GLU B 54 ? LEU B 69 ? GLU A 52 LEU A 67 1 ? 16 HELX_P HELX_P11 AB2 MET B 88 ? LEU B 108 ? MET A 86 LEU A 106 1 ? 21 HELX_P HELX_P12 AB3 THR B 121 ? ALA B 129 ? THR A 119 ALA A 127 1 ? 9 HELX_P HELX_P13 AB4 HIS B 139 ? PHE B 154 ? HIS A 137 PHE A 152 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE B 44 ? VAL B 49 ? ILE A 42 VAL A 47 AA1 2 ILE B 11 ? ALA B 16 ? ILE A 9 ALA A 14 AA1 3 ALA B 75 ? ILE B 83 ? ALA A 73 ILE A 81 AA1 4 GLY B 115 ? CYS B 119 ? GLY A 113 CYS A 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE B 45 ? O ILE A 43 N ILE B 13 ? N ILE A 11 AA1 2 3 N LEU B 14 ? N LEU A 12 O ILE B 79 ? O ILE A 77 AA1 3 4 N GLY B 80 ? N GLY A 78 O LEU B 117 ? O LEU A 115 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 52 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 52 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 52 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.63 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.67 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id MET _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 134 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 52.60 _pdbx_validate_torsion.psi -142.75 # _pdbx_point_symmetry.entry_id 6VFJ _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.entry_id 6VFJ _em_3d_fitting.id 1 _em_3d_fitting.details ;Icosahedral nanoparticle I53_dn5 model was docked into a reconstructed map using UCSF Chimera and Rosetta relaxed refinement was applied to relax the model into the map. ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6VFJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 31353 _em_3d_reconstruction.resolution 5.35 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details 'Fresh TBS buffer, 0.2um filtered, 0.06mM DDM detergent added immediately before freezing' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Self-assembling nanoparticle of icosahedral symmetry' _em_entity_assembly.name 'De novo designed nanoparticle of icosahedral symmetry I53_dn5_NP' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6VFJ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 1500 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_magnification 29000 _em_imaging.recording_temperature_maximum 90 _em_imaging.recording_temperature_minimum 70 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details unspecified _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 283 _em_vitrification.cryogen_name ETHANE _em_vitrification.details '0.06mM DDM detergent (from an 8X stock) added immediately before freezing' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6VFJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6VFJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6VFJ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 0 ? A MET 1 2 1 Y 1 B LEU 120 ? A LEU 121 3 1 Y 1 B GLU 121 ? A GLU 122 4 1 Y 1 B HIS 122 ? A HIS 123 5 1 Y 1 B HIS 123 ? A HIS 124 6 1 Y 1 B HIS 124 ? A HIS 125 7 1 Y 1 B HIS 125 ? A HIS 126 8 1 Y 1 B HIS 126 ? A HIS 127 9 1 Y 1 B HIS 127 ? A HIS 128 10 1 Y 1 A MET -1 ? B MET 1 11 1 Y 1 A GLY 0 ? B GLY 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 25 mM ? Tris-HCl 1 2 150 mM NaCl 'Sodium Chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 1.96 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50.4 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1548 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 207651 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? cryoSPARC 2.9.0 1 ? ? 2 'IMAGE ACQUISITION' ? Leginon ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? RELION 3.0 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.0 1 ? ? 11 CLASSIFICATION ? RELION 3.0 1 ? ? 12 RECONSTRUCTION ? RELION 3.0 1 ? ? 13 'VOLUME SELECTION' ? ? ? 1 1 1 14 'SERIES ALIGNMENT' ? ? ? 1 1 1 15 'MOLECULAR REPLACEMENT' ? ? ? 1 1 1 16 'LATTICE DISTORTION CORRECTION' ? ? ? 1 1 1 17 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 18 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 19 'MODEL REFINEMENT' ? Rosetta ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1.9 _em_specimen.details ;Nanoparticle was generated by co-expression of two components (A and B) in E coli. Assembled particles purified using a combination of Ni-affinity chromatography and gel filtration chromatography. ; _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Bill & Melinda Gates Foundation' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number OPP1115782 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6VFJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_