HEADER DE NOVO PROTEIN 05-JAN-20 6VFJ TITLE DE NOVO DESIGNED ICOSAHEDRAL NANOPARTICLE I53_DN5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: I53_DN5B; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: I53_DN5A; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DE NOVO, NANOPARTICLE, DE NOVO PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.ANTANASIJEVIC,A.B.WARD REVDAT 3 06-MAR-24 6VFJ 1 REMARK REVDAT 2 19-AUG-20 6VFJ 1 JRNL REVDAT 1 12-AUG-20 6VFJ 0 JRNL AUTH G.UEDA,A.ANTANASIJEVIC,J.A.FALLAS,W.SHEFFLER,J.COPPS, JRNL AUTH 2 D.ELLIS,G.B.HUTCHINSON,A.MOYER,A.YASMEEN,Y.TSYBOVSKY, JRNL AUTH 3 Y.J.PARK,M.J.BICK,B.SANKARAN,R.A.GILLESPIE,P.J.BROUWER, JRNL AUTH 4 P.H.ZWART,D.VEESLER,M.KANEKIYO,B.S.GRAHAM,R.W.SANDERS, JRNL AUTH 5 J.P.MOORE,P.J.KLASSE,A.B.WARD,N.P.KING,D.BAKER JRNL TITL TAILORED DESIGN OF PROTEIN NANOPARTICLE SCAFFOLDS FOR JRNL TITL 2 MULTIVALENT PRESENTATION OF VIRAL GLYCOPROTEIN ANTIGENS. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 32748788 JRNL DOI 10.7554/ELIFE.57659 REMARK 2 REMARK 2 RESOLUTION. 5.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, LEGINON, RELION, UCSF REMARK 3 CHIMERA, RELION, RELION, RELION, RELION, REMARK 3 ROSETTA REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : ICOSAHEDRAL NANOPARTICLE I53_DN5 MODEL WAS REMARK 3 DOCKED INTO A RECONSTRUCTED MAP USING UCSF CHIMERA AND ROSETTA REMARK 3 RELAXED REFINEMENT WAS APPLIED TO RELAX THE MODEL INTO THE MAP. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.350 REMARK 3 NUMBER OF PARTICLES : 31353 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6VFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246116. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DE NOVO DESIGNED NANOPARTICLE REMARK 245 OF ICOSAHEDRAL SYMMETRY I53_DN5_ REMARK 245 NP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.90 REMARK 245 SAMPLE SUPPORT DETAILS : UNSPECIFIED REMARK 245 SAMPLE VITRIFICATION DETAILS : 0.06MM DDM DETERGENT (FROM AN REMARK 245 8X STOCK) ADDED IMMEDIATELY REMARK 245 BEFORE FREEZING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : SELF-ASSEMBLING NANOPARTICLE OF REMARK 245 ICOSAHEDRAL SYMMETRY REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1548 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5040.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 29000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.309017 0.809017 -127.31500 REMARK 350 BIOMT2 2 0.309017 0.809017 -0.500000 78.68500 REMARK 350 BIOMT3 2 -0.809017 0.500000 0.309017 206.00000 REMARK 350 BIOMT1 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 3 -0.500000 0.309017 -0.809017 412.00000 REMARK 350 BIOMT1 4 -0.309017 0.809017 -0.500000 206.00000 REMARK 350 BIOMT2 4 0.809017 0.500000 0.309017 -127.31500 REMARK 350 BIOMT3 4 0.500000 -0.309017 -0.809017 333.31500 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 206.00000 REMARK 350 BIOMT2 5 0.309017 0.809017 0.500000 -127.31500 REMARK 350 BIOMT3 5 0.809017 -0.500000 0.309017 78.68500 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 412.00000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 412.00000 REMARK 350 BIOMT1 7 -0.500000 -0.309017 -0.809017 539.31500 REMARK 350 BIOMT2 7 0.309017 0.809017 -0.500000 78.68500 REMARK 350 BIOMT3 7 0.809017 -0.500000 -0.309017 206.00000 REMARK 350 BIOMT1 8 0.309017 -0.809017 -0.500000 412.00000 REMARK 350 BIOMT2 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 8 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.809017 0.500000 206.00000 REMARK 350 BIOMT2 9 0.809017 0.500000 0.309017 -127.31500 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 78.68500 REMARK 350 BIOMT1 10 -0.500000 -0.309017 0.809017 206.00000 REMARK 350 BIOMT2 10 0.309017 0.809017 0.500000 -127.31500 REMARK 350 BIOMT3 10 -0.809017 0.500000 -0.309017 333.31500 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 412.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 412.00000 REMARK 350 BIOMT1 12 0.500000 0.309017 0.809017 -127.31500 REMARK 350 BIOMT2 12 -0.309017 -0.809017 0.500000 333.31500 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 206.00000 REMARK 350 BIOMT1 13 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 13 -0.809017 -0.500000 0.309017 412.00000 REMARK 350 BIOMT3 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.809017 -0.500000 206.00000 REMARK 350 BIOMT2 14 -0.809017 -0.500000 -0.309017 539.31500 REMARK 350 BIOMT3 14 -0.500000 0.309017 0.809017 78.68500 REMARK 350 BIOMT1 15 0.500000 0.309017 -0.809017 206.00000 REMARK 350 BIOMT2 15 -0.309017 -0.809017 -0.500000 539.31500 REMARK 350 BIOMT3 15 -0.809017 0.500000 -0.309017 333.31500 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 412.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 412.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 -0.309017 -0.809017 539.31500 REMARK 350 BIOMT2 17 -0.309017 -0.809017 0.500000 333.31500 REMARK 350 BIOMT3 17 -0.809017 0.500000 0.309017 206.00000 REMARK 350 BIOMT1 18 0.309017 -0.809017 -0.500000 412.00000 REMARK 350 BIOMT2 18 -0.809017 -0.500000 0.309017 412.00000 REMARK 350 BIOMT3 18 -0.500000 0.309017 -0.809017 412.00000 REMARK 350 BIOMT1 19 0.309017 -0.809017 0.500000 206.00000 REMARK 350 BIOMT2 19 -0.809017 -0.500000 -0.309017 539.31500 REMARK 350 BIOMT3 19 0.500000 -0.309017 -0.809017 333.31500 REMARK 350 BIOMT1 20 -0.500000 -0.309017 0.809017 206.00000 REMARK 350 BIOMT2 20 -0.309017 -0.809017 -0.500000 539.31500 REMARK 350 BIOMT3 20 0.809017 -0.500000 0.309017 78.68500 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 0.500000 0.309017 206.00000 REMARK 350 BIOMT2 22 0.500000 0.309017 0.809017 -127.31500 REMARK 350 BIOMT3 22 0.309017 0.809017 -0.500000 78.68500 REMARK 350 BIOMT1 23 -0.500000 0.309017 -0.809017 412.00000 REMARK 350 BIOMT2 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 23 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 333.31500 REMARK 350 BIOMT2 24 -0.309017 0.809017 -0.500000 206.00000 REMARK 350 BIOMT3 24 0.809017 0.500000 0.309017 -127.31500 REMARK 350 BIOMT1 25 0.809017 -0.500000 0.309017 78.68500 REMARK 350 BIOMT2 25 0.500000 0.309017 -0.809017 206.00000 REMARK 350 BIOMT3 25 0.309017 0.809017 0.500000 -127.31500 REMARK 350 BIOMT1 26 0.000000 0.000000 -1.000000 412.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 412.00000 REMARK 350 BIOMT3 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 -0.500000 -0.309017 206.00000 REMARK 350 BIOMT2 27 -0.500000 -0.309017 -0.809017 539.31500 REMARK 350 BIOMT3 27 0.309017 0.809017 -0.500000 78.68500 REMARK 350 BIOMT1 28 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 28 0.309017 -0.809017 -0.500000 412.00000 REMARK 350 BIOMT3 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 29 -0.500000 0.309017 0.809017 78.68500 REMARK 350 BIOMT2 29 0.309017 -0.809017 0.500000 206.00000 REMARK 350 BIOMT3 29 0.809017 0.500000 0.309017 -127.31500 REMARK 350 BIOMT1 30 -0.809017 0.500000 -0.309017 333.31500 REMARK 350 BIOMT2 30 -0.500000 -0.309017 0.809017 206.00000 REMARK 350 BIOMT3 30 0.309017 0.809017 0.500000 -127.31500 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 412.00000 REMARK 350 BIOMT2 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 -1.000000 0.000000 412.00000 REMARK 350 BIOMT1 32 0.809017 -0.500000 -0.309017 206.00000 REMARK 350 BIOMT2 32 0.500000 0.309017 0.809017 -127.31500 REMARK 350 BIOMT3 32 -0.309017 -0.809017 0.500000 333.31500 REMARK 350 BIOMT1 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 33 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.809017 -0.500000 0.309017 412.00000 REMARK 350 BIOMT1 34 -0.500000 0.309017 0.809017 78.68500 REMARK 350 BIOMT2 34 -0.309017 0.809017 -0.500000 206.00000 REMARK 350 BIOMT3 34 -0.809017 -0.500000 -0.309017 539.31500 REMARK 350 BIOMT1 35 -0.809017 0.500000 -0.309017 333.31500 REMARK 350 BIOMT2 35 0.500000 0.309017 -0.809017 206.00000 REMARK 350 BIOMT3 35 -0.309017 -0.809017 -0.500000 539.31500 REMARK 350 BIOMT1 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 36 -1.000000 0.000000 0.000000 412.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 412.00000 REMARK 350 BIOMT1 37 -0.809017 0.500000 0.309017 206.00000 REMARK 350 BIOMT2 37 -0.500000 -0.309017 -0.809017 539.31500 REMARK 350 BIOMT3 37 -0.309017 -0.809017 0.500000 333.31500 REMARK 350 BIOMT1 38 -0.500000 0.309017 -0.809017 412.00000 REMARK 350 BIOMT2 38 0.309017 -0.809017 -0.500000 412.00000 REMARK 350 BIOMT3 38 -0.809017 -0.500000 0.309017 412.00000 REMARK 350 BIOMT1 39 0.500000 -0.309017 -0.809017 333.31500 REMARK 350 BIOMT2 39 0.309017 -0.809017 0.500000 206.00000 REMARK 350 BIOMT3 39 -0.809017 -0.500000 -0.309017 539.31500 REMARK 350 BIOMT1 40 0.809017 -0.500000 0.309017 78.68500 REMARK 350 BIOMT2 40 -0.500000 -0.309017 0.809017 206.00000 REMARK 350 BIOMT3 40 -0.309017 -0.809017 -0.500000 539.31500 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.809017 -0.500000 78.68500 REMARK 350 BIOMT2 42 -0.809017 0.500000 0.309017 206.00000 REMARK 350 BIOMT3 42 0.500000 0.309017 0.809017 -127.31500 REMARK 350 BIOMT1 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 43 -0.500000 0.309017 -0.809017 412.00000 REMARK 350 BIOMT3 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 44 0.809017 0.500000 0.309017 -127.31500 REMARK 350 BIOMT2 44 0.500000 -0.309017 -0.809017 333.31500 REMARK 350 BIOMT3 44 -0.309017 0.809017 -0.500000 206.00000 REMARK 350 BIOMT1 45 0.309017 0.809017 0.500000 -127.31500 REMARK 350 BIOMT2 45 0.809017 -0.500000 0.309017 78.68500 REMARK 350 BIOMT3 45 0.500000 0.309017 -0.809017 206.00000 REMARK 350 BIOMT1 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 -1.000000 412.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 412.00000 REMARK 350 BIOMT1 47 0.309017 0.809017 -0.500000 78.68500 REMARK 350 BIOMT2 47 0.809017 -0.500000 -0.309017 206.00000 REMARK 350 BIOMT3 47 -0.500000 -0.309017 -0.809017 539.31500 REMARK 350 BIOMT1 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 48 0.309017 -0.809017 -0.500000 412.00000 REMARK 350 BIOMT1 49 0.809017 0.500000 0.309017 -127.31500 REMARK 350 BIOMT2 49 -0.500000 0.309017 0.809017 78.68500 REMARK 350 BIOMT3 49 0.309017 -0.809017 0.500000 206.00000 REMARK 350 BIOMT1 50 0.309017 0.809017 0.500000 -127.31500 REMARK 350 BIOMT2 50 -0.809017 0.500000 -0.309017 333.31500 REMARK 350 BIOMT3 50 -0.500000 -0.309017 0.809017 206.00000 REMARK 350 BIOMT1 51 0.000000 -1.000000 0.000000 412.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 412.00000 REMARK 350 BIOMT3 51 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.809017 0.500000 333.31500 REMARK 350 BIOMT2 52 0.809017 -0.500000 -0.309017 206.00000 REMARK 350 BIOMT3 52 0.500000 0.309017 0.809017 -127.31500 REMARK 350 BIOMT1 53 -0.809017 -0.500000 0.309017 412.00000 REMARK 350 BIOMT2 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 53 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 54 -0.809017 -0.500000 -0.309017 539.31500 REMARK 350 BIOMT2 54 -0.500000 0.309017 0.809017 78.68500 REMARK 350 BIOMT3 54 -0.309017 0.809017 -0.500000 206.00000 REMARK 350 BIOMT1 55 -0.309017 -0.809017 -0.500000 539.31500 REMARK 350 BIOMT2 55 -0.809017 0.500000 -0.309017 333.31500 REMARK 350 BIOMT3 55 0.500000 0.309017 -0.809017 206.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 412.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 56 -1.000000 0.000000 0.000000 412.00000 REMARK 350 BIOMT1 57 -0.309017 -0.809017 0.500000 333.31500 REMARK 350 BIOMT2 57 -0.809017 0.500000 0.309017 206.00000 REMARK 350 BIOMT3 57 -0.500000 -0.309017 -0.809017 539.31500 REMARK 350 BIOMT1 58 -0.809017 -0.500000 0.309017 412.00000 REMARK 350 BIOMT2 58 -0.500000 0.309017 -0.809017 412.00000 REMARK 350 BIOMT3 58 0.309017 -0.809017 -0.500000 412.00000 REMARK 350 BIOMT1 59 -0.809017 -0.500000 -0.309017 539.31500 REMARK 350 BIOMT2 59 0.500000 -0.309017 -0.809017 333.31500 REMARK 350 BIOMT3 59 0.309017 -0.809017 0.500000 206.00000 REMARK 350 BIOMT1 60 -0.309017 -0.809017 -0.500000 539.31500 REMARK 350 BIOMT2 60 0.809017 -0.500000 0.309017 78.68500 REMARK 350 BIOMT3 60 -0.500000 -0.309017 0.809017 206.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 LEU B 120 REMARK 465 GLU B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 52 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 134 -142.75 52.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-21174 RELATED DB: EMDB REMARK 900 DE NOVO DESIGNED ICOSAHEDRAL NANOPARTICLE I53_DN5 DBREF 6VFJ B 0 127 PDB 6VFJ 6VFJ 0 127 DBREF 6VFJ A -1 153 PDB 6VFJ 6VFJ -1 153 SEQRES 1 B 128 MET GLU GLU ALA GLU LEU ALA TYR LEU LEU GLY GLU LEU SEQRES 2 B 128 ALA TYR LYS LEU GLY GLU TYR ARG ILE ALA ILE ARG ALA SEQRES 3 B 128 TYR ARG ILE ALA LEU LYS ARG ASP PRO ASN ASN ALA GLU SEQRES 4 B 128 ALA TRP TYR ASN LEU GLY ASN ALA TYR TYR LYS GLN GLY SEQRES 5 B 128 ARG TYR ARG GLU ALA ILE GLU TYR TYR GLN LYS ALA LEU SEQRES 6 B 128 GLU LEU ASP PRO ASN ASN ALA GLU ALA TRP TYR ASN LEU SEQRES 7 B 128 GLY ASN ALA TYR TYR GLU ARG GLY GLU TYR GLU GLU ALA SEQRES 8 B 128 ILE GLU TYR TYR ARG LYS ALA LEU ARG LEU ASP PRO ASN SEQRES 9 B 128 ASN ALA ASP ALA MET GLN ASN LEU LEU ASN ALA LYS MET SEQRES 10 B 128 ARG GLU GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 155 MET GLY LYS TYR ASP GLY SER LYS LEU ARG ILE GLY ILE SEQRES 2 A 155 LEU HIS ALA ARG TRP ASN ALA GLU ILE ILE LEU ALA LEU SEQRES 3 A 155 VAL LEU GLY ALA LEU LYS ARG LEU GLN GLU PHE GLY VAL SEQRES 4 A 155 LYS ARG GLU ASN ILE ILE ILE GLU THR VAL PRO GLY SER SEQRES 5 A 155 PHE GLU LEU PRO TYR GLY SER LYS LEU PHE VAL GLU LYS SEQRES 6 A 155 GLN LYS ARG LEU GLY LYS PRO LEU ASP ALA ILE ILE PRO SEQRES 7 A 155 ILE GLY VAL LEU ILE LYS GLY SER THR MET HIS PHE GLU SEQRES 8 A 155 TYR ILE CYS ASP SER THR THR HIS GLN LEU MET LYS LEU SEQRES 9 A 155 ASN PHE GLU LEU GLY ILE PRO VAL ILE PHE GLY VAL LEU SEQRES 10 A 155 THR CYS LEU THR ASP GLU GLN ALA GLU ALA ARG ALA GLY SEQRES 11 A 155 LEU ILE GLU GLY LYS MET HIS ASN HIS GLY GLU ASP TRP SEQRES 12 A 155 GLY ALA ALA ALA VAL GLU MET ALA THR LYS PHE ASN HELIX 1 AA1 GLU B 1 LEU B 16 1 16 HELIX 2 AA2 GLU B 18 ASP B 33 1 16 HELIX 3 AA3 ASN B 36 GLN B 50 1 15 HELIX 4 AA4 ARG B 52 ASP B 67 1 16 HELIX 5 AA5 ASN B 70 ARG B 84 1 15 HELIX 6 AA6 GLU B 86 ASP B 101 1 16 HELIX 7 AA7 ASN B 104 GLU B 119 1 16 HELIX 8 AA8 ASN A 17 PHE A 35 1 19 HELIX 9 AA9 LYS A 38 GLU A 40 5 3 HELIX 10 AB1 GLU A 52 LEU A 67 1 16 HELIX 11 AB2 MET A 86 LEU A 106 1 21 HELIX 12 AB3 THR A 119 ALA A 127 1 9 HELIX 13 AB4 HIS A 137 PHE A 152 1 16 SHEET 1 AA1 4 ILE A 42 VAL A 47 0 SHEET 2 AA1 4 ILE A 9 ALA A 14 1 N ILE A 11 O ILE A 43 SHEET 3 AA1 4 ALA A 73 ILE A 81 1 O ILE A 77 N LEU A 12 SHEET 4 AA1 4 GLY A 113 CYS A 117 1 O LEU A 115 N GLY A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000