HEADER DE NOVO PROTEIN 07-JAN-20 6VG7 TITLE DE NOVO DESIGNED ROSSMANN FOLD PROTEIN ROS2_49223 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED PROTEIN RO2_25; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS ROSSMANN FOLD, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.PAN,Y.ZHANG,M.KELLY,T.KORTEMME REVDAT 3 14-JUN-23 6VG7 1 REMARK REVDAT 2 09-SEP-20 6VG7 1 JRNL REVDAT 1 19-AUG-20 6VG7 0 JRNL AUTH X.PAN,M.C.THOMPSON,Y.ZHANG,L.LIU,J.S.FRASER,M.J.S.KELLY, JRNL AUTH 2 T.KORTEMME JRNL TITL EXPANDING THE SPACE OF PROTEIN GEOMETRIES BY COMPUTATIONAL JRNL TITL 2 DESIGN OF DE NOVO FOLD FAMILIES. JRNL REF SCIENCE V. 369 1132 2020 JRNL REFN ESSN 1095-9203 JRNL PMID 32855341 JRNL DOI 10.1126/SCIENCE.ABC0881 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246328. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.76 MM [U-99% 13C; U-99% 15N] REMARK 210 DE NOVO PROTEIN RO2_25, 21.1 MM REMARK 210 POTASSIUM PHOSPHATE MONOBASIC, REMARK 210 28.9 MM SODIUM PHOSPHATE DIBASIC, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 4.0.6, NMRPIPE 9.8, REMARK 210 CCPNMR ANALYSIS 2.4.2, ARIA 2.3.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 78 OE1 GLU A 124 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 28 78.55 -117.24 REMARK 500 1 ASP A 54 150.12 154.89 REMARK 500 1 GLN A 72 -55.15 -125.63 REMARK 500 1 LYS A 85 140.29 -175.16 REMARK 500 1 THR A 109 -63.16 -125.21 REMARK 500 2 LEU A 28 76.78 -105.63 REMARK 500 2 ASP A 54 152.44 151.10 REMARK 500 2 GLN A 72 -53.72 -127.13 REMARK 500 2 SER A 74 14.06 -65.18 REMARK 500 2 GLU A 76 99.75 -170.13 REMARK 500 2 LYS A 85 145.07 -174.42 REMARK 500 2 ALA A 101 149.92 -176.08 REMARK 500 3 LEU A 28 76.69 -108.47 REMARK 500 3 ASP A 54 153.87 143.22 REMARK 500 3 GLN A 72 -58.01 -127.48 REMARK 500 3 SER A 74 6.87 -60.65 REMARK 500 3 LYS A 85 146.03 -170.18 REMARK 500 3 ALA A 101 -167.95 -172.59 REMARK 500 3 GLU A 123 74.78 -110.26 REMARK 500 4 LEU A 28 79.80 -114.67 REMARK 500 4 ASP A 54 156.41 100.22 REMARK 500 4 GLN A 72 -53.50 -126.71 REMARK 500 4 SER A 74 0.04 -55.60 REMARK 500 4 GLU A 76 140.25 -170.08 REMARK 500 4 ALA A 101 -177.81 -178.12 REMARK 500 5 ASP A 54 150.60 164.83 REMARK 500 5 GLN A 72 -52.54 -125.26 REMARK 500 5 SER A 74 14.21 -65.55 REMARK 500 5 GLU A 76 100.51 -166.24 REMARK 500 5 LYS A 85 148.38 -175.81 REMARK 500 5 ALA A 101 -169.62 -175.62 REMARK 500 5 GLU A 123 74.95 -106.90 REMARK 500 6 ASP A 54 145.63 152.83 REMARK 500 6 GLN A 72 -55.39 -125.30 REMARK 500 6 SER A 74 12.67 -60.32 REMARK 500 6 LYS A 85 132.24 -174.60 REMARK 500 6 ALA A 101 -177.31 -175.67 REMARK 500 7 LEU A 28 79.72 -111.56 REMARK 500 7 ASP A 54 139.11 151.63 REMARK 500 7 GLN A 72 -50.89 -124.88 REMARK 500 7 SER A 74 12.52 -59.59 REMARK 500 7 GLU A 76 146.84 -170.15 REMARK 500 7 LYS A 85 137.81 -175.42 REMARK 500 7 ALA A 101 -170.15 -175.50 REMARK 500 8 ASP A 54 141.52 152.25 REMARK 500 8 GLN A 72 -50.54 -122.35 REMARK 500 8 SER A 74 -3.89 -52.39 REMARK 500 8 ALA A 101 -175.42 -176.96 REMARK 500 9 ASP A 54 162.56 87.04 REMARK 500 9 GLN A 72 -60.56 -125.83 REMARK 500 REMARK 500 THIS ENTRY HAS 103 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30706 RELATED DB: BMRB REMARK 900 DE NOVO DESIGNED ROSSMANN FOLD PROTEIN ROS2_49223 DBREF 6VG7 A 1 124 PDB 6VG7 6VG7 1 124 SEQRES 1 A 124 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 124 LEU VAL PRO ARG GLY SER HIS MET THR LEU PHE VAL LEU SEQRES 3 A 124 ILE LEU SER ASN ASP LYS LYS LEU ILE GLU GLU ALA ARG SEQRES 4 A 124 LYS MET ALA GLU LYS ALA ASN LEU ILE LEU ILE THR VAL SEQRES 5 A 124 GLY ASP GLU GLU GLU LEU LYS LYS ALA ILE LYS LYS ALA SEQRES 6 A 124 ASP ASP ILE ALA LYS LYS GLN ASN SER SER GLU ALA LYS SEQRES 7 A 124 ILE LEU ILE LEU LEU GLU LYS PRO VAL SER PRO GLU TYR SEQRES 8 A 124 GLU LYS LYS LEU GLN LYS TYR ALA ASP ALA GLU VAL ARG SEQRES 9 A 124 VAL ARG THR VAL THR SER PRO ASP GLU ALA LYS ARG TRP SEQRES 10 A 124 ILE LYS GLU PHE SER GLU GLU HELIX 1 AA1 ASP A 31 ALA A 45 1 15 HELIX 2 AA2 ASP A 54 GLN A 72 1 19 HELIX 3 AA3 SER A 88 LYS A 97 1 10 HELIX 4 AA4 SER A 110 GLU A 123 1 14 SHEET 1 AA1 4 ILE A 48 THR A 51 0 SHEET 2 AA1 4 LEU A 23 LEU A 28 1 N VAL A 25 O ILE A 48 SHEET 3 AA1 4 LYS A 78 LEU A 83 1 O LEU A 82 N LEU A 26 SHEET 4 AA1 4 GLU A 102 THR A 107 1 O ARG A 106 N ILE A 81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1