HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-JAN-20 6VHG TITLE CRYSTAL STRUCTURE OF PHOSPHORYLATED RET TYROSINE KINASE DOMAIN TITLE 2 COMPLEXED WITH A PYRAZOLO[1,5-A]PYRIMIDINE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CADHERIN FAMILY MEMBER 12,PROTO-ONCOGENE C-RET; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RET, CDHF12, CDHR16, PTC, RET51; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFASTBACHT KEYWDS INHIBITOR, COMPLEX, TYROSINE KINASE, CATALYTIC DOMAIN, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LEE,G.SPRAGGON REVDAT 5 23-OCT-24 6VHG 1 REMARK REVDAT 4 15-NOV-23 6VHG 1 REMARK REVDAT 3 11-OCT-23 6VHG 1 REMARK REVDAT 2 29-APR-20 6VHG 1 JRNL REVDAT 1 26-FEB-20 6VHG 0 JRNL AUTH C.J.N.MATHISON,D.CHIANELLI,P.V.RUCKER,J.NELSON,J.ROLAND, JRNL AUTH 2 Z.HUANG,Y.YANG,J.JIANG,Y.F.XIE,R.EPPLE,B.BURSULAYA,C.LEE, JRNL AUTH 3 M.Y.GAO,J.SHAFFER,S.BRIONES,Y.SARKISOVA,A.GALKIN,L.LI,N.LI, JRNL AUTH 4 C.LI,S.HUA,S.KASIBHATLA,J.KINYAMU-AKUNDA,R.KIKKAWA, JRNL AUTH 5 V.MOLTENI,J.E.TELLEW JRNL TITL EFFICACY AND TOLERABILITY OF PYRAZOLO[1,5-A]PYRIMIDINE RET JRNL TITL 2 KINASE INHIBITORS FOR THE TREATMENT OF LUNG ADENOCARCINOMA. JRNL REF ACS MED.CHEM.LETT. V. 11 558 2020 JRNL REFN ISSN 1948-5875 JRNL PMID 32292564 JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00015 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 (3-OCT-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 18144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2301 REMARK 3 BIN FREE R VALUE : 0.2914 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 21 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43010 REMARK 3 B22 (A**2) : 0.43010 REMARK 3 B33 (A**2) : -0.86020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.274 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.207 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.251 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.201 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2330 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3160 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 794 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 383 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2327 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 284 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2001 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.03 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.2876 -31.3083 14.2645 REMARK 3 T TENSOR REMARK 3 T11: -0.0396 T22: -0.191 REMARK 3 T33: -0.1292 T12: 0.01 REMARK 3 T13: 0.0917 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 2.8562 L22: 2.4124 REMARK 3 L33: 2.5987 L12: 0.4329 REMARK 3 L13: 0.3394 L23: 0.0574 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.4013 S13: 0.0777 REMARK 3 S21: 0.4013 S22: -0.0074 S23: 0.072 REMARK 3 S31: 0.0777 S32: 0.072 S33: -0.0063 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IVU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.98150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.98150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.98150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 71.98150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.98150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.98150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 703 REMARK 465 ALA A 704 REMARK 465 SER A 705 REMARK 465 VAL A 706 REMARK 465 LYS A 821 REMARK 465 VAL A 822 REMARK 465 GLY A 823 REMARK 465 PRO A 824 REMARK 465 GLY A 825 REMARK 465 TYR A 826 REMARK 465 LEU A 827 REMARK 465 GLY A 828 REMARK 465 SER A 829 REMARK 465 GLY A 830 REMARK 465 GLY A 831 REMARK 465 SER A 832 REMARK 465 ARG A 833 REMARK 465 ASN A 834 REMARK 465 SER A 835 REMARK 465 SER A 836 REMARK 465 SER A 837 REMARK 465 LEU A 838 REMARK 465 ASP A 839 REMARK 465 HIS A 840 REMARK 465 PRO A 841 REMARK 465 ASP A 842 REMARK 465 GLU A 843 REMARK 465 ARG A 1013 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 722 CD CE NZ REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 PHE A 744 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 747 CG CD CE NZ REMARK 470 GLU A 762 CD OE1 OE2 REMARK 470 GLU A 818 CD OE1 OE2 REMARK 470 ARG A 844 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 900 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 902 CD OE1 OE2 REMARK 470 LYS A 907 CG CD CE NZ REMARK 470 GLN A 910 CG CD OE1 NE2 REMARK 470 PHE A 924 CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 959 CD NE CZ NH1 NH2 REMARK 470 GLU A 978 CG CD OE1 OE2 REMARK 470 ARG A 982 CD NE CZ NH1 NH2 REMARK 470 LYS A 989 CD CE NZ REMARK 470 LYS A1003 CG CD CE NZ REMARK 470 LYS A1011 CD CE NZ REMARK 470 ARG A1012 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 763 31.58 -95.62 REMARK 500 ASN A 783 108.34 -160.39 REMARK 500 ARG A 873 -36.21 72.99 REMARK 500 GLU A 884 131.92 -39.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QX1 A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1108 DBREF 6VHG A 705 1013 UNP P07949 RET_HUMAN 705 1013 SEQADV 6VHG GLY A 703 UNP P07949 EXPRESSION TAG SEQADV 6VHG ALA A 704 UNP P07949 EXPRESSION TAG SEQRES 1 A 311 GLY ALA SER VAL ASP ALA PHE LYS ILE LEU GLU ASP PRO SEQRES 2 A 311 LYS TRP GLU PHE PRO ARG LYS ASN LEU VAL LEU GLY LYS SEQRES 3 A 311 THR LEU GLY GLU GLY GLU PHE GLY LYS VAL VAL LYS ALA SEQRES 4 A 311 THR ALA PHE HIS LEU LYS GLY ARG ALA GLY TYR THR THR SEQRES 5 A 311 VAL ALA VAL LYS MET LEU LYS GLU ASN ALA SER PRO SER SEQRES 6 A 311 GLU LEU ARG ASP LEU LEU SER GLU PHE ASN VAL LEU LYS SEQRES 7 A 311 GLN VAL ASN HIS PRO HIS VAL ILE LYS LEU TYR GLY ALA SEQRES 8 A 311 CYS SER GLN ASP GLY PRO LEU LEU LEU ILE VAL GLU TYR SEQRES 9 A 311 ALA LYS TYR GLY SER LEU ARG GLY PHE LEU ARG GLU SER SEQRES 10 A 311 ARG LYS VAL GLY PRO GLY TYR LEU GLY SER GLY GLY SER SEQRES 11 A 311 ARG ASN SER SER SER LEU ASP HIS PRO ASP GLU ARG ALA SEQRES 12 A 311 LEU THR MET GLY ASP LEU ILE SER PHE ALA TRP GLN ILE SEQRES 13 A 311 SER GLN GLY MET GLN TYR LEU ALA GLU MET LYS LEU VAL SEQRES 14 A 311 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU VAL ALA GLU SEQRES 15 A 311 GLY ARG LYS MET LYS ILE SER ASP PHE GLY LEU SER ARG SEQRES 16 A 311 ASP VAL TYR GLU GLU ASP SER PTR VAL LYS ARG SER GLN SEQRES 17 A 311 GLY ARG ILE PRO VAL LYS TRP MET ALA ILE GLU SER LEU SEQRES 18 A 311 PHE ASP HIS ILE PTR THR THR GLN SER ASP VAL TRP SER SEQRES 19 A 311 PHE GLY VAL LEU LEU TRP GLU ILE VAL THR LEU GLY GLY SEQRES 20 A 311 ASN PRO TYR PRO GLY ILE PRO PRO GLU ARG LEU PHE ASN SEQRES 21 A 311 LEU LEU LYS THR GLY HIS ARG MET GLU ARG PRO ASP ASN SEQRES 22 A 311 CYS SER GLU GLU MET TYR ARG LEU MET LEU GLN CYS TRP SEQRES 23 A 311 LYS GLN GLU PRO ASP LYS ARG PRO VAL PHE ALA ASP ILE SEQRES 24 A 311 SER LYS ASP LEU GLU LYS MET MET VAL LYS ARG ARG MODRES 6VHG PTR A 905 TYR MODIFIED RESIDUE MODRES 6VHG PTR A 928 TYR MODIFIED RESIDUE HET PTR A 905 16 HET PTR A 928 16 HET QX1 A1101 34 HET SO4 A1102 5 HET SO4 A1103 5 HET SO4 A1104 5 HET SO4 A1105 5 HET CL A1106 1 HET CL A1107 1 HET ACT A1108 7 HETNAM PTR O-PHOSPHOTYROSINE HETNAM QX1 3-(3,4-DIMETHOXYPHENYL)-N~5~-(1-METHYLPIPERIDIN-4-YL)- HETNAM 2 QX1 6-PHENYLPYRAZOLO[1,5-A]PYRIMIDINE-5,7-DIAMINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 2 QX1 C26 H30 N6 O2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 CL 2(CL 1-) FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 HOH *133(H2 O) HELIX 1 AA1 PRO A 720 LYS A 722 5 3 HELIX 2 AA2 LEU A 746 ARG A 749 5 4 HELIX 3 AA3 SER A 765 LYS A 780 1 16 HELIX 4 AA4 SER A 811 SER A 819 1 9 HELIX 5 AA5 THR A 847 MET A 868 1 22 HELIX 6 AA6 ALA A 876 ARG A 878 5 3 HELIX 7 AA7 ASP A 892 SER A 896 5 5 HELIX 8 AA8 PRO A 914 MET A 918 5 5 HELIX 9 AA9 ALA A 919 HIS A 926 1 8 HELIX 10 AB1 THR A 929 THR A 946 1 18 HELIX 11 AB2 PRO A 956 THR A 966 1 11 HELIX 12 AB3 SER A 977 TRP A 988 1 12 HELIX 13 AB4 GLU A 991 ARG A 995 5 5 HELIX 14 AB5 VAL A 997 ARG A 1012 1 16 SHEET 1 AA1 5 LEU A 724 GLY A 733 0 SHEET 2 AA1 5 GLY A 736 PHE A 744 -1 O VAL A 738 N LEU A 730 SHEET 3 AA1 5 TYR A 752 MET A 759 -1 O VAL A 757 N VAL A 739 SHEET 4 AA1 5 LEU A 801 GLU A 805 -1 O VAL A 804 N ALA A 756 SHEET 5 AA1 5 LEU A 790 CYS A 794 -1 N TYR A 791 O ILE A 803 SHEET 1 AA2 2 LEU A 870 VAL A 871 0 SHEET 2 AA2 2 ARG A 897 ASP A 898 -1 O ARG A 897 N VAL A 871 SHEET 1 AA3 2 ILE A 880 ALA A 883 0 SHEET 2 AA3 2 LYS A 887 ILE A 890 -1 O LYS A 889 N LEU A 881 LINK C SER A 904 N PTR A 905 1555 1555 1.31 LINK C PTR A 905 N VAL A 906 1555 1555 1.34 LINK C ILE A 927 N PTR A 928 1555 1555 1.33 LINK C PTR A 928 N THR A 929 1555 1555 1.33 SITE 1 AC1 17 LEU A 730 GLY A 731 PHE A 735 VAL A 738 SITE 2 AC1 17 ALA A 756 LYS A 758 GLU A 775 ILE A 788 SITE 3 AC1 17 VAL A 804 GLU A 805 ALA A 807 GLY A 810 SITE 4 AC1 17 ARG A 878 ASN A 879 LEU A 881 SER A 891 SITE 5 AC1 17 ASP A 892 SITE 1 AC2 7 SER A 811 ARG A 813 GLY A 814 ARG A 878 SITE 2 AC2 7 HOH A1217 HOH A1219 HOH A1252 SITE 1 AC3 5 ARG A 817 ARG A 820 GLY A 949 ASN A 950 SITE 2 AC3 5 HOH A1255 SITE 1 AC4 4 PRO A 720 ARG A 721 LYS A 722 HOH A1205 SITE 1 AC5 7 ARG A 770 ARG A 873 ARG A 897 ARG A 908 SITE 2 AC5 7 SER A 909 HOH A1201 HOH A1212 SITE 1 AC6 4 ARG A 897 ASP A 898 GLU A 901 HOH A1273 SITE 1 AC7 3 TYR A 809 GLU A 884 GLY A 885 SITE 1 AC8 2 LYS A 740 HOH A1213 CRYST1 97.815 97.815 143.963 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010223 0.005902 0.000000 0.00000 SCALE2 0.000000 0.011805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006946 0.00000