HEADER IMMUNE SYSTEM 13-JAN-20 6VIH TITLE THE LIGAND-FREE STRUCTURE OF MOUSE RABL3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAB-LIKE PROTEIN 3; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RABL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE SYSTEM, GTPASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SU,D.R.TOMCHICK,B.BEUTLER REVDAT 3 06-MAR-24 6VIH 1 REMARK REVDAT 2 29-APR-20 6VIH 1 JRNL REVDAT 1 08-APR-20 6VIH 0 JRNL AUTH X.ZHONG,L.SU,Y.YANG,E.NAIR-GILL,M.TANG,P.ANDERTON,X.LI, JRNL AUTH 2 J.WANG,X.ZHAN,D.R.TOMCHICK,C.A.BRAUTIGAM,E.M.Y.MORESCO, JRNL AUTH 3 J.H.CHOI,B.BEUTLER JRNL TITL GENETIC AND STRUCTURAL STUDIES OF RABL3 REVEAL AN ESSENTIAL JRNL TITL 2 ROLE IN LYMPHOID DEVELOPMENT AND FUNCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 8563 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32220963 JRNL DOI 10.1073/PNAS.2000703117 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 3 NUMBER OF REFLECTIONS : 9491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3130 - 5.7222 1.00 1510 169 0.2416 0.3244 REMARK 3 2 5.7222 - 4.5431 1.00 1428 158 0.1987 0.2175 REMARK 3 3 4.5431 - 3.9691 1.00 1409 157 0.1906 0.2328 REMARK 3 4 3.9691 - 3.6064 1.00 1400 155 0.2270 0.2888 REMARK 3 5 3.6064 - 3.3480 1.00 1402 156 0.2583 0.2998 REMARK 3 6 3.3480 - 3.1506 0.81 1123 125 0.2647 0.3035 REMARK 3 7 3.1506 - 2.9930 0.19 269 30 0.2906 0.3444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7147 -0.5319 -42.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.5275 T22: 0.7101 REMARK 3 T33: 0.4896 T12: 0.3696 REMARK 3 T13: 0.1503 T23: -0.1046 REMARK 3 L TENSOR REMARK 3 L11: 2.9408 L22: 4.3148 REMARK 3 L33: 0.9655 L12: 0.0605 REMARK 3 L13: 0.8130 L23: 0.3280 REMARK 3 S TENSOR REMARK 3 S11: -0.1710 S12: -0.7934 S13: 0.0451 REMARK 3 S21: 0.7284 S22: 0.0883 S23: 1.2988 REMARK 3 S31: -0.1546 S32: -0.5552 S33: 0.2867 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0913 -11.5014 -44.0183 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.2031 REMARK 3 T33: 0.3480 T12: 0.2354 REMARK 3 T13: -0.1351 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.2921 L22: 2.2609 REMARK 3 L33: 5.1520 L12: 0.1480 REMARK 3 L13: -0.2522 L23: 0.2772 REMARK 3 S TENSOR REMARK 3 S11: 0.2893 S12: 0.2251 S13: -0.3274 REMARK 3 S21: -0.3113 S22: -0.0109 S23: 0.6077 REMARK 3 S31: 0.1440 S32: -0.1777 S33: 0.0929 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8731 1.5645 -28.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.1730 REMARK 3 T33: 0.2320 T12: 0.0249 REMARK 3 T13: 0.0181 T23: -0.1131 REMARK 3 L TENSOR REMARK 3 L11: 4.3446 L22: 2.8044 REMARK 3 L33: 6.4105 L12: 0.5210 REMARK 3 L13: 0.9921 L23: 1.9127 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.6591 S13: 0.4258 REMARK 3 S21: -0.2866 S22: 0.1807 S23: -0.1608 REMARK 3 S31: -0.7527 S32: 0.3457 S33: -0.1980 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3853 4.1721 -31.9882 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.3381 REMARK 3 T33: 0.3377 T12: -0.0696 REMARK 3 T13: 0.0235 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.5744 L22: 3.6107 REMARK 3 L33: 3.8622 L12: -0.4519 REMARK 3 L13: 0.8446 L23: -0.4529 REMARK 3 S TENSOR REMARK 3 S11: -0.2062 S12: 0.1092 S13: 0.8008 REMARK 3 S21: 0.1456 S22: 0.1010 S23: -0.0024 REMARK 3 S31: -0.6527 S32: 0.2283 S33: -0.1965 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9550 -4.1198 -29.5962 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.0707 REMARK 3 T33: 0.3377 T12: -0.0532 REMARK 3 T13: -0.0608 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.3288 L22: 3.4098 REMARK 3 L33: 4.1242 L12: -0.5468 REMARK 3 L13: 1.6866 L23: 0.8627 REMARK 3 S TENSOR REMARK 3 S11: -0.2248 S12: 0.0260 S13: -0.2847 REMARK 3 S21: -0.0030 S22: 0.2281 S23: 0.1989 REMARK 3 S31: 0.2386 S32: 0.1947 S33: -0.0629 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1785 -3.1181 -16.5122 REMARK 3 T TENSOR REMARK 3 T11: 0.4003 T22: 0.0621 REMARK 3 T33: 0.1071 T12: -0.0434 REMARK 3 T13: 0.0800 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 1.9486 L22: 2.5381 REMARK 3 L33: 4.3828 L12: 0.0663 REMARK 3 L13: 0.7731 L23: 1.0930 REMARK 3 S TENSOR REMARK 3 S11: 0.1220 S12: -0.3481 S13: 0.2005 REMARK 3 S21: 0.7493 S22: 0.1321 S23: 0.0992 REMARK 3 S31: 0.0435 S32: -0.2762 S33: 0.8855 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3534 -1.8281 -11.3923 REMARK 3 T TENSOR REMARK 3 T11: 0.5717 T22: 0.1694 REMARK 3 T33: 0.3397 T12: -0.0532 REMARK 3 T13: -0.1424 T23: -0.0856 REMARK 3 L TENSOR REMARK 3 L11: 3.2844 L22: 2.3233 REMARK 3 L33: 3.1768 L12: -0.7365 REMARK 3 L13: 0.1237 L23: 0.8526 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.6379 S13: 0.0775 REMARK 3 S21: 1.2563 S22: 0.0173 S23: -0.2509 REMARK 3 S31: 0.1404 S32: 0.3254 S33: -0.5845 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1628 5.0450 -21.0707 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.2206 REMARK 3 T33: 0.4258 T12: 0.0220 REMARK 3 T13: -0.0777 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 2.9441 L22: 1.5762 REMARK 3 L33: 4.3413 L12: -1.1031 REMARK 3 L13: 1.2562 L23: 0.5529 REMARK 3 S TENSOR REMARK 3 S11: -0.3075 S12: 0.2819 S13: 0.5442 REMARK 3 S21: 0.1949 S22: 0.1867 S23: -0.6927 REMARK 3 S31: -0.8467 S32: 0.7140 S33: 0.0934 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 191 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2011 -7.3209 -28.6279 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.3175 REMARK 3 T33: 0.2624 T12: -0.0276 REMARK 3 T13: -0.0273 T23: -0.2773 REMARK 3 L TENSOR REMARK 3 L11: 4.0090 L22: 3.8945 REMARK 3 L33: 5.5105 L12: -0.6590 REMARK 3 L13: 0.8160 L23: -0.6160 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: 0.6240 S13: -0.5854 REMARK 3 S21: -0.0552 S22: 0.0492 S23: -0.3078 REMARK 3 S31: 0.5403 S32: 0.4668 S33: -0.8614 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7721 -0.7897 -37.2478 REMARK 3 T TENSOR REMARK 3 T11: 0.2275 T22: 0.1851 REMARK 3 T33: 0.0926 T12: 0.2097 REMARK 3 T13: 0.0298 T23: -0.1508 REMARK 3 L TENSOR REMARK 3 L11: 1.7623 L22: 1.5164 REMARK 3 L33: 1.7136 L12: -0.4552 REMARK 3 L13: -0.6620 L23: 0.4356 REMARK 3 S TENSOR REMARK 3 S11: -0.2037 S12: -0.1990 S13: 0.0478 REMARK 3 S21: 0.1535 S22: 0.0400 S23: 0.1944 REMARK 3 S31: -0.3417 S32: -0.3699 S33: -0.4844 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0085 5.0059 -29.7758 REMARK 3 T TENSOR REMARK 3 T11: 0.8276 T22: 0.7438 REMARK 3 T33: 0.5614 T12: 0.0293 REMARK 3 T13: 0.1003 T23: -0.2569 REMARK 3 L TENSOR REMARK 3 L11: 2.2445 L22: 2.7096 REMARK 3 L33: 3.2681 L12: -1.9192 REMARK 3 L13: -0.3017 L23: 0.3485 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.4834 S13: 0.3572 REMARK 3 S21: 0.4398 S22: -0.1159 S23: 0.5789 REMARK 3 S31: -0.2544 S32: -0.8790 S33: 0.1719 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3754 -12.1037 -35.1557 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.2539 REMARK 3 T33: 0.2802 T12: -0.0611 REMARK 3 T13: 0.0658 T23: -0.0829 REMARK 3 L TENSOR REMARK 3 L11: 3.7686 L22: 1.0672 REMARK 3 L33: 5.2539 L12: -1.8455 REMARK 3 L13: 1.0752 L23: -0.8950 REMARK 3 S TENSOR REMARK 3 S11: 0.1428 S12: -0.2293 S13: -0.9671 REMARK 3 S21: 0.0972 S22: -0.1343 S23: 0.6858 REMARK 3 S31: 0.7043 S32: -0.6810 S33: 0.0177 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8368 6.5930 -47.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.4103 T22: 0.3482 REMARK 3 T33: 0.2912 T12: 0.1075 REMARK 3 T13: 0.0568 T23: 0.1146 REMARK 3 L TENSOR REMARK 3 L11: 5.3181 L22: 1.8955 REMARK 3 L33: 5.5348 L12: -1.5029 REMARK 3 L13: 4.1640 L23: -0.1712 REMARK 3 S TENSOR REMARK 3 S11: -0.1070 S12: 0.8968 S13: 1.0610 REMARK 3 S21: -0.7204 S22: -0.4089 S23: -0.3875 REMARK 3 S31: -0.8852 S32: 0.8827 S33: -0.6506 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6967 -4.2132 -55.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.7805 T22: 1.4432 REMARK 3 T33: 0.5492 T12: 0.1165 REMARK 3 T13: 0.1121 T23: -0.0846 REMARK 3 L TENSOR REMARK 3 L11: 0.9117 L22: 1.1379 REMARK 3 L33: 3.5456 L12: -1.0187 REMARK 3 L13: 0.5313 L23: -0.5600 REMARK 3 S TENSOR REMARK 3 S11: 0.3608 S12: 1.1252 S13: -0.0155 REMARK 3 S21: -0.6104 S22: -0.1356 S23: -0.1238 REMARK 3 S31: -0.3312 S32: 0.4856 S33: -0.1440 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7078 7.5446 -46.6097 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.5181 REMARK 3 T33: 0.3842 T12: 0.4225 REMARK 3 T13: -0.0396 T23: -0.1736 REMARK 3 L TENSOR REMARK 3 L11: 4.6045 L22: 4.5617 REMARK 3 L33: 2.4698 L12: -0.8744 REMARK 3 L13: -0.1186 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: 0.2418 S12: 0.0364 S13: 0.6590 REMARK 3 S21: -0.1884 S22: -0.2075 S23: 0.8608 REMARK 3 S31: -0.9303 S32: -0.9276 S33: 0.6655 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4959 5.1602 -56.0115 REMARK 3 T TENSOR REMARK 3 T11: 0.8802 T22: 0.6427 REMARK 3 T33: 0.3256 T12: 0.4402 REMARK 3 T13: -0.0952 T23: -0.1011 REMARK 3 L TENSOR REMARK 3 L11: 3.4818 L22: 4.0831 REMARK 3 L33: 3.7209 L12: -0.9624 REMARK 3 L13: 1.2598 L23: 0.7024 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: -0.1274 S13: 0.1372 REMARK 3 S21: -0.2702 S22: -0.1913 S23: 0.4318 REMARK 3 S31: -0.5774 S32: -0.5712 S33: 0.2486 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 33 OR RESID REMARK 3 39 THROUGH 208)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 33 OR RESID REMARK 3 39 THROUGH 116 OR RESID 131 OR RESID 134 REMARK 3 THROUGH 208)) REMARK 3 ATOM PAIRS NUMBER : 1744 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.80 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.70 REMARK 200 R MERGE FOR SHELL (I) : 3.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M AMMONIUM PHOSPHATE MONOBASIC, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.49900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.73650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.73650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.49900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -28 REMARK 465 SER B -27 REMARK 465 TYR B -26 REMARK 465 TYR B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 ASP B -18 REMARK 465 TYR B -17 REMARK 465 ASP B -16 REMARK 465 ILE B -15 REMARK 465 PRO B -14 REMARK 465 THR B -13 REMARK 465 THR B -12 REMARK 465 GLU B -11 REMARK 465 ASN B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 PHE B -7 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 ALA B -4 REMARK 465 MET B -3 REMARK 465 ASP B -2 REMARK 465 PRO B -1 REMARK 465 GLU B 0 REMARK 465 PHE B 1 REMARK 465 ASN B 34 REMARK 465 PRO B 35 REMARK 465 SER B 36 REMARK 465 TRP B 37 REMARK 465 ASP B 117 REMARK 465 ALA B 118 REMARK 465 VAL B 119 REMARK 465 PRO B 120 REMARK 465 THR B 121 REMARK 465 GLY B 122 REMARK 465 VAL B 123 REMARK 465 LEU B 124 REMARK 465 VAL B 125 REMARK 465 THR B 126 REMARK 465 ASN B 127 REMARK 465 GLY B 128 REMARK 465 ASP B 129 REMARK 465 PHE B 210 REMARK 465 ARG B 211 REMARK 465 GLU B 212 REMARK 465 GLY B 213 REMARK 465 ASN B 214 REMARK 465 GLN B 215 REMARK 465 ILE B 216 REMARK 465 MET A -28 REMARK 465 SER A -27 REMARK 465 TYR A -26 REMARK 465 TYR A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 ASP A -18 REMARK 465 TYR A -17 REMARK 465 ASP A -16 REMARK 465 ILE A -15 REMARK 465 PRO A -14 REMARK 465 THR A -13 REMARK 465 THR A -12 REMARK 465 GLU A -11 REMARK 465 ASN A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 MET A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 GLU A 0 REMARK 465 PHE A 1 REMARK 465 PRO A 35 REMARK 465 SER A 36 REMARK 465 TRP A 37 REMARK 465 THR A 38 REMARK 465 ALA A 118 REMARK 465 VAL A 119 REMARK 465 PRO A 120 REMARK 465 THR A 121 REMARK 465 GLY A 122 REMARK 465 VAL A 123 REMARK 465 LEU A 124 REMARK 465 VAL A 125 REMARK 465 THR A 126 REMARK 465 ASN A 127 REMARK 465 GLY A 128 REMARK 465 ASP A 129 REMARK 465 TYR A 130 REMARK 465 ASP A 131 REMARK 465 ARG A 132 REMARK 465 GLU A 133 REMARK 465 PHE A 209 REMARK 465 PHE A 210 REMARK 465 ARG A 211 REMARK 465 GLU A 212 REMARK 465 GLY A 213 REMARK 465 ASN A 214 REMARK 465 GLN A 215 REMARK 465 ILE A 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 131 72.61 -160.68 REMARK 500 GLU B 154 32.96 -78.25 REMARK 500 THR B 155 -56.22 -121.37 REMARK 500 ARG B 207 -73.19 -178.50 REMARK 500 ARG A 207 88.05 55.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 6VIH B 2 216 UNP Q9D4V7 RABL3_MOUSE 2 216 DBREF 6VIH A 2 216 UNP Q9D4V7 RABL3_MOUSE 2 216 SEQADV 6VIH MET B -28 UNP Q9D4V7 INITIATING METHIONINE SEQADV 6VIH SER B -27 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR B -26 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR B -25 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS B -24 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS B -23 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS B -22 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS B -21 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS B -20 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS B -19 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASP B -18 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR B -17 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASP B -16 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ILE B -15 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PRO B -14 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH THR B -13 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH THR B -12 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLU B -11 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASN B -10 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH LEU B -9 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR B -8 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PHE B -7 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLN B -6 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLY B -5 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ALA B -4 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH MET B -3 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASP B -2 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PRO B -1 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLU B 0 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PHE B 1 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH MET A -28 UNP Q9D4V7 INITIATING METHIONINE SEQADV 6VIH SER A -27 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR A -26 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR A -25 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS A -24 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS A -23 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS A -22 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS A -21 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS A -20 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH HIS A -19 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASP A -18 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR A -17 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASP A -16 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ILE A -15 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PRO A -14 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH THR A -13 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH THR A -12 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLU A -11 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASN A -10 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH LEU A -9 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH TYR A -8 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PHE A -7 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLN A -6 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLY A -5 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ALA A -4 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH MET A -3 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH ASP A -2 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PRO A -1 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH GLU A 0 UNP Q9D4V7 EXPRESSION TAG SEQADV 6VIH PHE A 1 UNP Q9D4V7 EXPRESSION TAG SEQRES 1 B 245 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 245 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 245 ASP PRO GLU PHE ALA SER LEU ASP ARG VAL LYS VAL LEU SEQRES 4 B 245 VAL LEU GLY ASP SER GLY VAL GLY LYS SER SER LEU VAL SEQRES 5 B 245 HIS LEU LEU CYS HIS ASN GLN VAL LEU GLY ASN PRO SER SEQRES 6 B 245 TRP THR VAL GLY CYS SER VAL ASP ILE ARG VAL HIS ASP SEQRES 7 B 245 TYR LYS GLU GLY THR PRO GLU GLU LYS THR TYR TYR ILE SEQRES 8 B 245 GLU LEU TRP ASP VAL GLY GLY SER VAL GLY SER ALA SER SEQRES 9 B 245 SER VAL LYS SER THR ARG ALA VAL PHE TYR ASN SER VAL SEQRES 10 B 245 ASN GLY ILE ILE LEU VAL HIS ASP LEU THR ASN LYS LYS SEQRES 11 B 245 SER SER GLN ASN LEU TYR ARG TRP SER LEU GLU VAL LEU SEQRES 12 B 245 ASN ARG ASP ALA VAL PRO THR GLY VAL LEU VAL THR ASN SEQRES 13 B 245 GLY ASP TYR ASP ARG GLU GLN PHE ALA ASP ASN GLN ILE SEQRES 14 B 245 PRO LEU LEU VAL ILE GLY THR LYS LEU ASP GLN ILE HIS SEQRES 15 B 245 GLU THR LYS ARG HIS GLU VAL LEU ILE ARG THR ALA PHE SEQRES 16 B 245 LEU ALA GLU ASP PHE ASN ALA GLU GLU ILE ASN LEU ASP SEQRES 17 B 245 CYS THR ASN PRO ARG SER SER ALA ALA GLY SER SER ASN SEQRES 18 B 245 ALA VAL LYS LEU SER ARG PHE PHE ASP LYS VAL ILE GLU SEQRES 19 B 245 LYS ARG TYR PHE PHE ARG GLU GLY ASN GLN ILE SEQRES 1 A 245 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 245 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 245 ASP PRO GLU PHE ALA SER LEU ASP ARG VAL LYS VAL LEU SEQRES 4 A 245 VAL LEU GLY ASP SER GLY VAL GLY LYS SER SER LEU VAL SEQRES 5 A 245 HIS LEU LEU CYS HIS ASN GLN VAL LEU GLY ASN PRO SER SEQRES 6 A 245 TRP THR VAL GLY CYS SER VAL ASP ILE ARG VAL HIS ASP SEQRES 7 A 245 TYR LYS GLU GLY THR PRO GLU GLU LYS THR TYR TYR ILE SEQRES 8 A 245 GLU LEU TRP ASP VAL GLY GLY SER VAL GLY SER ALA SER SEQRES 9 A 245 SER VAL LYS SER THR ARG ALA VAL PHE TYR ASN SER VAL SEQRES 10 A 245 ASN GLY ILE ILE LEU VAL HIS ASP LEU THR ASN LYS LYS SEQRES 11 A 245 SER SER GLN ASN LEU TYR ARG TRP SER LEU GLU VAL LEU SEQRES 12 A 245 ASN ARG ASP ALA VAL PRO THR GLY VAL LEU VAL THR ASN SEQRES 13 A 245 GLY ASP TYR ASP ARG GLU GLN PHE ALA ASP ASN GLN ILE SEQRES 14 A 245 PRO LEU LEU VAL ILE GLY THR LYS LEU ASP GLN ILE HIS SEQRES 15 A 245 GLU THR LYS ARG HIS GLU VAL LEU ILE ARG THR ALA PHE SEQRES 16 A 245 LEU ALA GLU ASP PHE ASN ALA GLU GLU ILE ASN LEU ASP SEQRES 17 A 245 CYS THR ASN PRO ARG SER SER ALA ALA GLY SER SER ASN SEQRES 18 A 245 ALA VAL LYS LEU SER ARG PHE PHE ASP LYS VAL ILE GLU SEQRES 19 A 245 LYS ARG TYR PHE PHE ARG GLU GLY ASN GLN ILE HELIX 1 AA1 GLY B 18 ASN B 29 1 12 HELIX 2 AA2 ALA B 74 SER B 79 1 6 HELIX 3 AA3 THR B 80 ASN B 86 5 7 HELIX 4 AA4 ASN B 99 ASN B 105 1 7 HELIX 5 AA5 ASN B 105 ASN B 115 1 11 HELIX 6 AA6 ASP B 131 ASP B 137 1 7 HELIX 7 AA7 LYS B 156 PHE B 171 1 16 HELIX 8 AA8 SER B 190 PHE B 209 1 20 HELIX 9 AA9 GLY A 18 ASN A 29 1 12 HELIX 10 AB1 ALA A 74 SER A 79 1 6 HELIX 11 AB2 THR A 80 ASN A 86 5 7 HELIX 12 AB3 ASN A 99 ASN A 105 1 7 HELIX 13 AB4 ASN A 105 ARG A 116 1 12 HELIX 14 AB5 GLN A 134 ASN A 138 5 5 HELIX 15 AB6 LYS A 156 PHE A 171 1 16 HELIX 16 AB7 ASN A 182 SER A 186 5 5 HELIX 17 AB8 SER A 190 LYS A 206 1 17 SHEET 1 AA112 GLU B 174 ASN B 177 0 SHEET 2 AA112 LEU B 142 THR B 147 1 N VAL B 144 O GLU B 174 SHEET 3 AA112 GLY B 90 ASP B 96 1 N LEU B 93 O LEU B 143 SHEET 4 AA112 ARG B 6 LEU B 12 1 N LEU B 10 O ILE B 92 SHEET 5 AA112 LYS B 58 ASP B 66 1 O GLU B 63 N VAL B 9 SHEET 6 AA112 CYS B 41 TYR B 50 -1 N ARG B 46 O ILE B 62 SHEET 7 AA112 SER A 42 TYR A 50 -1 O VAL A 43 N CYS B 41 SHEET 8 AA112 LYS A 58 ASP A 66 -1 O TYR A 60 N HIS A 48 SHEET 9 AA112 ARG A 6 LEU A 12 1 N VAL A 9 O TRP A 65 SHEET 10 AA112 GLY A 90 ASP A 96 1 O ILE A 92 N LEU A 10 SHEET 11 AA112 LEU A 142 THR A 147 1 O LEU A 143 N LEU A 93 SHEET 12 AA112 GLU A 174 ASN A 177 1 O GLU A 174 N VAL A 144 CRYST1 58.998 79.200 111.473 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008971 0.00000