HEADER ISOMERASE 14-JAN-20 6VJ6 TITLE 2.55 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PEPTIDYLPROLYL ISOMERASE TITLE 2 (PRSA) FROM BACILLUS CEREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYLPROLYL ISOMERASE (PRSA); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FOLDASE PROTEIN PRSA 4; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS (STRAIN ATCC 14579 / DSM 31 / SOURCE 3 JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711); SOURCE 4 ORGANISM_TAXID: 226900; SOURCE 5 STRAIN: ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / SOURCE 6 NRRL B-3711; SOURCE 7 GENE: PRSA4, BC_2862; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VARIANT: (DE3)MAGIC; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, PRSA, FOLDASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,G.WIERSUM,M.ENDRES, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 1 05-FEB-20 6VJ6 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,O.KIRYUKHINA,G.WIERSUM, JRNL AUTH 2 M.ENDRES,K.J.F.SATCHELL, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL 2.55 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PEPTIDYLPROLYL JRNL TITL 2 ISOMERASE (PRSA) FROM BACILLUS CEREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.075 REMARK 3 FREE R VALUE TEST SET COUNT : 1382 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1855 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.79900 REMARK 3 B22 (A**2) : -7.05000 REMARK 3 B33 (A**2) : 12.91700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.49500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.412 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4292 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4102 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5717 ; 1.452 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9674 ; 0.384 ; 1.618 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 1.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;19.598 ;26.744 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ; 8.763 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 8.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4632 ; 0.054 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.054 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 876 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 118 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2018 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2067 ; 4.163 ; 5.392 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2066 ; 4.163 ; 5.390 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2582 ; 6.322 ; 8.090 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2583 ; 6.321 ; 8.092 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2225 ; 4.761 ; 5.995 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2226 ; 4.760 ; 5.996 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3135 ; 7.583 ; 8.750 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3136 ; 7.582 ; 8.752 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2461 17.6905 39.7055 REMARK 3 T TENSOR REMARK 3 T11: 0.3128 T22: 0.3434 REMARK 3 T33: 0.0505 T12: -0.0091 REMARK 3 T13: 0.0161 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 7.5092 L22: 1.0345 REMARK 3 L33: 0.4928 L12: 1.6192 REMARK 3 L13: -1.8096 L23: -0.4586 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.1423 S13: -0.3215 REMARK 3 S21: -0.0495 S22: 0.0308 S23: -0.0752 REMARK 3 S31: 0.0004 S32: -0.0270 S33: 0.0361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7515 31.8305 58.2535 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.2854 REMARK 3 T33: 0.2881 T12: -0.0367 REMARK 3 T13: -0.0023 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1493 L22: 0.5578 REMARK 3 L33: 5.0835 L12: 0.1518 REMARK 3 L13: 0.2243 L23: -1.1137 REMARK 3 S TENSOR REMARK 3 S11: -0.1010 S12: 0.0509 S13: 0.1241 REMARK 3 S21: 0.0014 S22: 0.1072 S23: 0.1898 REMARK 3 S31: -0.4465 S32: 0.1489 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9391 34.4730 42.6865 REMARK 3 T TENSOR REMARK 3 T11: 0.4620 T22: 0.5009 REMARK 3 T33: 0.1655 T12: -0.0246 REMARK 3 T13: -0.0008 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 5.7523 L22: 3.2647 REMARK 3 L33: 2.4053 L12: 4.2417 REMARK 3 L13: -3.1778 L23: -2.0745 REMARK 3 S TENSOR REMARK 3 S11: -0.1556 S12: -0.2591 S13: -0.0407 REMARK 3 S21: 0.0074 S22: -0.1792 S23: 0.0918 REMARK 3 S31: 0.2443 S32: -0.0404 S33: 0.3348 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5645 70.1430 28.7848 REMARK 3 T TENSOR REMARK 3 T11: 0.2704 T22: 0.2460 REMARK 3 T33: 0.0525 T12: 0.0220 REMARK 3 T13: -0.0141 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.6307 L22: 5.9103 REMARK 3 L33: 0.1290 L12: -1.5609 REMARK 3 L13: 0.5908 L23: -0.6465 REMARK 3 S TENSOR REMARK 3 S11: 0.2374 S12: -0.0072 S13: -0.3810 REMARK 3 S21: -0.1826 S22: -0.1977 S23: -0.0757 REMARK 3 S31: 0.0321 S32: -0.0107 S33: -0.0397 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3953 42.2599 36.8353 REMARK 3 T TENSOR REMARK 3 T11: 0.3964 T22: 0.3479 REMARK 3 T33: 0.0650 T12: 0.0199 REMARK 3 T13: -0.0162 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 7.5185 L22: 7.0408 REMARK 3 L33: 0.0980 L12: 5.7969 REMARK 3 L13: 0.6111 L23: 0.7590 REMARK 3 S TENSOR REMARK 3 S11: -0.2798 S12: 0.0205 S13: 0.6113 REMARK 3 S21: -0.4407 S22: 0.2018 S23: 0.6054 REMARK 3 S31: -0.0165 S32: 0.0921 S33: 0.0779 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2530 20.6974 25.4652 REMARK 3 T TENSOR REMARK 3 T11: 0.5358 T22: 0.6971 REMARK 3 T33: 0.0218 T12: -0.1091 REMARK 3 T13: 0.0239 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 4.3078 L22: 1.8128 REMARK 3 L33: 4.7744 L12: -1.9505 REMARK 3 L13: -0.9077 L23: 1.7778 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: 1.0446 S13: 0.2914 REMARK 3 S21: -0.4016 S22: -0.0858 S23: -0.1161 REMARK 3 S31: -0.0313 S32: -0.3884 S33: -0.0001 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2030 23.7236 -3.9536 REMARK 3 T TENSOR REMARK 3 T11: 0.4005 T22: 0.3847 REMARK 3 T33: 0.0154 T12: 0.0199 REMARK 3 T13: 0.0357 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 4.7803 L22: 0.9991 REMARK 3 L33: 0.5012 L12: -0.6350 REMARK 3 L13: 1.0922 L23: 0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: 0.0359 S13: 0.0942 REMARK 3 S21: 0.0412 S22: -0.1079 S23: -0.0411 REMARK 3 S31: 0.0247 S32: 0.0342 S33: 0.0298 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 83 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6533 8.7337 -18.2622 REMARK 3 T TENSOR REMARK 3 T11: 0.3442 T22: 0.4040 REMARK 3 T33: 0.3460 T12: -0.0240 REMARK 3 T13: -0.0487 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.4340 L22: 4.3923 REMARK 3 L33: 1.7784 L12: 1.1350 REMARK 3 L13: -1.4118 L23: -2.4849 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.1773 S13: -0.0461 REMARK 3 S21: -0.1253 S22: 0.2890 S23: 0.1922 REMARK 3 S31: 0.1051 S32: -0.2589 S33: -0.2367 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7190 9.1702 -1.8937 REMARK 3 T TENSOR REMARK 3 T11: 0.4419 T22: 0.4598 REMARK 3 T33: 0.1195 T12: 0.0123 REMARK 3 T13: 0.0083 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.9195 L22: 2.3614 REMARK 3 L33: 1.8456 L12: -1.4220 REMARK 3 L13: 0.8572 L23: -0.7508 REMARK 3 S TENSOR REMARK 3 S11: -0.2265 S12: 0.1861 S13: -0.0138 REMARK 3 S21: -0.0859 S22: -0.0197 S23: -0.3703 REMARK 3 S31: -0.2480 S32: -0.3493 S33: 0.2463 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 222 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4169 -25.3341 10.9594 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.2601 REMARK 3 T33: 0.0733 T12: -0.0258 REMARK 3 T13: -0.0290 T23: 0.0429 REMARK 3 L TENSOR REMARK 3 L11: 5.3230 L22: 7.2137 REMARK 3 L33: 0.1102 L12: 2.2132 REMARK 3 L13: 0.1119 L23: -0.1760 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: -0.0540 S13: 0.1202 REMARK 3 S21: 0.3789 S22: -0.1589 S23: -0.5612 REMARK 3 S31: 0.0224 S32: -0.1545 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 223 B 262 REMARK 3 ORIGIN FOR THE GROUP (A): 28.9956 2.2766 3.7756 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.1747 REMARK 3 T33: 0.2504 T12: -0.0408 REMARK 3 T13: 0.0061 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 5.1603 L22: 4.1858 REMARK 3 L33: 0.5131 L12: -4.5216 REMARK 3 L13: -0.3071 L23: -0.0543 REMARK 3 S TENSOR REMARK 3 S11: -0.1028 S12: -0.0968 S13: -0.3442 REMARK 3 S21: 0.1829 S22: 0.1180 S23: 0.2812 REMARK 3 S31: -0.0971 S32: -0.0484 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 263 B 280 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5028 24.7118 14.1241 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.3092 REMARK 3 T33: 0.1549 T12: -0.0085 REMARK 3 T13: 0.0226 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 3.5635 L22: 2.6350 REMARK 3 L33: 0.7778 L12: -2.0420 REMARK 3 L13: 0.3340 L23: 0.4754 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: -0.2733 S13: 0.0019 REMARK 3 S21: 0.3289 S22: 0.1013 S23: 0.1485 REMARK 3 S31: -0.0814 S32: -0.1154 S33: 0.0733 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6VJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : BE REMARK 200 OPTICS : C(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27237 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : 0.78700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 8.3 MG/ML, 0.01M TRIS PH 8.3; REMARK 280 RESERVIOR (SCREEN JCSG+, G1): 0.1M HEPES PH 7.0, 30% V/V REMARK 280 JEFFAMINE ED-2001 PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.71250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.17900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.71250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.17900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -2.42206 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.32003 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 49 -10.67 -144.92 REMARK 500 SER A 174 -14.32 -144.57 REMARK 500 ASP A 273 52.70 -96.07 REMARK 500 PHE A 275 30.18 -97.14 REMARK 500 GLU A 279 -59.62 -26.48 REMARK 500 TYR B 49 -10.99 -146.51 REMARK 500 SER B 174 -14.71 -140.59 REMARK 500 LYS B 224 148.88 -39.78 REMARK 500 ASP B 273 57.86 -97.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2NV A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2NV B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP97038 RELATED DB: TARGETTRACK DBREF 6VJ6 A 26 280 UNP Q81CB1 PRSA4_BACCR 26 280 DBREF 6VJ6 B 26 280 UNP Q81CB1 PRSA4_BACCR 26 280 SEQADV 6VJ6 SER A 23 UNP Q81CB1 EXPRESSION TAG SEQADV 6VJ6 ASN A 24 UNP Q81CB1 EXPRESSION TAG SEQADV 6VJ6 ALA A 25 UNP Q81CB1 EXPRESSION TAG SEQADV 6VJ6 SER B 23 UNP Q81CB1 EXPRESSION TAG SEQADV 6VJ6 ASN B 24 UNP Q81CB1 EXPRESSION TAG SEQADV 6VJ6 ALA B 25 UNP Q81CB1 EXPRESSION TAG SEQRES 1 A 258 SER ASN ALA ASP ASN ILE VAL THR THR LYS SER GLY SER SEQRES 2 A 258 ILE SER GLU SER ASP PHE ASN LYS LYS LEU LYS GLU ASN SEQRES 3 A 258 TYR GLY LYS GLN ASN LEU SER GLU MSE VAL VAL GLU LYS SEQRES 4 A 258 VAL LEU HIS ASP LYS TYR LYS VAL THR ASP GLU GLU VAL SEQRES 5 A 258 THR LYS GLN LEU GLU GLU LEU LYS ASP LYS MSE GLY ASP SEQRES 6 A 258 ASN PHE ASN THR TYR MSE GLU SER ASN GLY VAL LYS ASN SEQRES 7 A 258 GLU ASP GLN LEU LYS GLU LYS LEU LYS LEU THR PHE ALA SEQRES 8 A 258 PHE GLU LYS ALA ILE LYS ALA THR VAL THR GLU LYS ASP SEQRES 9 A 258 ILE LYS ASP HIS TYR LYS PRO LYS LEU GLN VAL SER HIS SEQRES 10 A 258 ILE LEU VAL LYS ASP GLU LYS THR ALA LYS GLU ILE LYS SEQRES 11 A 258 GLU LYS LEU ASN SER GLY GLU ASP PHE ALA ALA LEU ALA SEQRES 12 A 258 LYS GLN TYR SER GLU ASP PRO GLY SER LYS GLU LYS GLY SEQRES 13 A 258 GLY GLU LEU SER GLU PHE GLY PRO GLY MSE MSE VAL LYS SEQRES 14 A 258 GLU PHE GLU ASP ALA ALA TYR LYS LEU GLU VAL GLY GLN SEQRES 15 A 258 LEU SER GLU PRO VAL LYS SER SER PHE GLY TYR HIS ILE SEQRES 16 A 258 ILE LYS LEU THR ASP LYS LYS GLU LEU LYS PRO TYR GLU SEQRES 17 A 258 GLU GLU LYS GLU ASN ILE ARG LYS GLU LEU GLU GLN GLN SEQRES 18 A 258 ARG ILE GLN ASP PRO GLN PHE HIS GLN GLN VAL THR ARG SEQRES 19 A 258 ASP LEU LEU LYS ASN ALA ASP ILE LYS VAL SER ASP LYS SEQRES 20 A 258 ASP LEU LYS ASP THR PHE LYS GLU LEU GLU LYS SEQRES 1 B 258 SER ASN ALA ASP ASN ILE VAL THR THR LYS SER GLY SER SEQRES 2 B 258 ILE SER GLU SER ASP PHE ASN LYS LYS LEU LYS GLU ASN SEQRES 3 B 258 TYR GLY LYS GLN ASN LEU SER GLU MSE VAL VAL GLU LYS SEQRES 4 B 258 VAL LEU HIS ASP LYS TYR LYS VAL THR ASP GLU GLU VAL SEQRES 5 B 258 THR LYS GLN LEU GLU GLU LEU LYS ASP LYS MSE GLY ASP SEQRES 6 B 258 ASN PHE ASN THR TYR MSE GLU SER ASN GLY VAL LYS ASN SEQRES 7 B 258 GLU ASP GLN LEU LYS GLU LYS LEU LYS LEU THR PHE ALA SEQRES 8 B 258 PHE GLU LYS ALA ILE LYS ALA THR VAL THR GLU LYS ASP SEQRES 9 B 258 ILE LYS ASP HIS TYR LYS PRO LYS LEU GLN VAL SER HIS SEQRES 10 B 258 ILE LEU VAL LYS ASP GLU LYS THR ALA LYS GLU ILE LYS SEQRES 11 B 258 GLU LYS LEU ASN SER GLY GLU ASP PHE ALA ALA LEU ALA SEQRES 12 B 258 LYS GLN TYR SER GLU ASP PRO GLY SER LYS GLU LYS GLY SEQRES 13 B 258 GLY GLU LEU SER GLU PHE GLY PRO GLY MSE MSE VAL LYS SEQRES 14 B 258 GLU PHE GLU ASP ALA ALA TYR LYS LEU GLU VAL GLY GLN SEQRES 15 B 258 LEU SER GLU PRO VAL LYS SER SER PHE GLY TYR HIS ILE SEQRES 16 B 258 ILE LYS LEU THR ASP LYS LYS GLU LEU LYS PRO TYR GLU SEQRES 17 B 258 GLU GLU LYS GLU ASN ILE ARG LYS GLU LEU GLU GLN GLN SEQRES 18 B 258 ARG ILE GLN ASP PRO GLN PHE HIS GLN GLN VAL THR ARG SEQRES 19 B 258 ASP LEU LEU LYS ASN ALA ASP ILE LYS VAL SER ASP LYS SEQRES 20 B 258 ASP LEU LYS ASP THR PHE LYS GLU LEU GLU LYS MODRES 6VJ6 MSE A 57 MET MODIFIED RESIDUE MODRES 6VJ6 MSE A 85 MET MODIFIED RESIDUE MODRES 6VJ6 MSE A 93 MET MODIFIED RESIDUE MODRES 6VJ6 MSE A 188 MET MODIFIED RESIDUE MODRES 6VJ6 MSE A 189 MET MODIFIED RESIDUE MODRES 6VJ6 MSE B 57 MET MODIFIED RESIDUE MODRES 6VJ6 MSE B 85 MET MODIFIED RESIDUE MODRES 6VJ6 MSE B 93 MET MODIFIED RESIDUE MODRES 6VJ6 MSE B 188 MET MODIFIED RESIDUE MODRES 6VJ6 MSE B 189 MET MODIFIED RESIDUE HET MSE A 57 8 HET MSE A 85 8 HET MSE A 93 8 HET MSE A 188 8 HET MSE A 189 8 HET MSE B 57 8 HET MSE B 85 8 HET MSE B 93 8 HET MSE B 188 8 HET MSE B 189 8 HET 2NV A 301 19 HET GOL A 302 6 HET GOL A 303 6 HET 2NV B 301 19 HETNAM MSE SELENOMETHIONINE HETNAM 2NV 3,6,9,12,15-PENTAOXAOCTADECAN-17-AMINE HETNAM GOL GLYCEROL HETSYN 2NV JEFFAMINE ED-2001 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 2NV 2(C13 H29 N O5) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *157(H2 O) HELIX 1 AA1 GLU A 38 TYR A 67 1 30 HELIX 2 AA2 THR A 70 GLY A 86 1 17 HELIX 3 AA3 ASN A 88 MSE A 93 1 6 HELIX 4 AA4 GLU A 94 GLY A 97 5 4 HELIX 5 AA5 ASN A 100 ALA A 120 1 21 HELIX 6 AA6 THR A 123 ASP A 129 1 7 HELIX 7 AA7 ASP A 144 SER A 157 1 14 HELIX 8 AA8 ASP A 160 SER A 169 1 10 HELIX 9 AA9 SER A 174 GLY A 178 5 5 HELIX 10 AB1 VAL A 190 LYS A 199 1 10 HELIX 11 AB2 PRO A 228 ASP A 247 1 20 HELIX 12 AB3 ASP A 247 ASN A 261 1 15 HELIX 13 AB4 ASP A 268 GLU A 279 5 12 HELIX 14 AB5 GLU B 38 TYR B 67 1 30 HELIX 15 AB6 THR B 70 GLY B 86 1 17 HELIX 16 AB7 ASN B 88 GLU B 94 1 7 HELIX 17 AB8 ASN B 100 ALA B 120 1 21 HELIX 18 AB9 THR B 123 ASP B 129 1 7 HELIX 19 AC1 ASP B 144 SER B 157 1 14 HELIX 20 AC2 ASP B 160 SER B 169 1 10 HELIX 21 AC3 SER B 174 GLY B 178 5 5 HELIX 22 AC4 VAL B 190 LYS B 199 1 10 HELIX 23 AC5 PRO B 228 GLU B 231 5 4 HELIX 24 AC6 GLU B 232 ASP B 247 1 16 HELIX 25 AC7 ASP B 247 ASN B 261 1 15 HELIX 26 AC8 ASP B 268 LYS B 272 5 5 SHEET 1 AA1 2 ASN A 27 VAL A 29 0 SHEET 2 AA1 2 ILE A 36 SER A 37 -1 O ILE A 36 N ILE A 28 SHEET 1 AA2 3 LEU A 135 VAL A 142 0 SHEET 2 AA2 3 GLY A 214 LYS A 223 -1 O TYR A 215 N VAL A 142 SHEET 3 AA2 3 VAL A 209 SER A 211 -1 N VAL A 209 O HIS A 216 SHEET 1 AA3 2 ASN B 27 VAL B 29 0 SHEET 2 AA3 2 ILE B 36 SER B 37 -1 O ILE B 36 N ILE B 28 SHEET 1 AA4 3 LEU B 135 VAL B 142 0 SHEET 2 AA4 3 GLY B 214 LYS B 223 -1 O TYR B 215 N VAL B 142 SHEET 3 AA4 3 VAL B 209 SER B 211 -1 N VAL B 209 O HIS B 216 LINK C GLU A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N VAL A 58 1555 1555 1.35 LINK C LYS A 84 N MSE A 85 1555 1555 1.34 LINK C MSE A 85 N GLY A 86 1555 1555 1.34 LINK C TYR A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N GLU A 94 1555 1555 1.34 LINK C GLY A 187 N MSE A 188 1555 1555 1.34 LINK C MSE A 188 N MSE A 189 1555 1555 1.34 LINK C MSE A 189 N VAL A 190 1555 1555 1.34 LINK C GLU B 56 N MSE B 57 1555 1555 1.33 LINK C MSE B 57 N VAL B 58 1555 1555 1.36 LINK C LYS B 84 N MSE B 85 1555 1555 1.34 LINK C MSE B 85 N GLY B 86 1555 1555 1.34 LINK C TYR B 92 N MSE B 93 1555 1555 1.34 LINK C MSE B 93 N GLU B 94 1555 1555 1.34 LINK C GLY B 187 N MSE B 188 1555 1555 1.34 LINK C MSE B 188 N MSE B 189 1555 1555 1.34 LINK C MSE B 189 N VAL B 190 1555 1555 1.34 SITE 1 AC1 4 VAL A 190 PHE A 213 HIS A 216 HOH A 450 SITE 1 AC2 3 LYS A 128 TYR A 131 TYR A 229 SITE 1 AC3 3 ASN A 48 TYR A 49 GLU A 56 SITE 1 AC4 7 ASP B 171 GLY B 187 MSE B 189 VAL B 190 SITE 2 AC4 7 PHE B 213 HIS B 216 HOH B 412 CRYST1 151.425 70.358 79.357 90.00 91.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006604 0.000000 0.000202 0.00000 SCALE2 0.000000 0.014213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012607 0.00000