data_6VJQ # _entry.id 6VJQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6VJQ pdb_00006vjq 10.2210/pdb6vjq/pdb WWPDB D_1000246517 ? ? BMRB 30714 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of Prochlorosin 2.1 produced by Prochlorococcus MIT 9313' _pdbx_database_related.db_id 30714 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6VJQ _pdbx_database_status.recvd_initial_deposition_date 2020-01-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bobeica, S.C.' 1 0000-0001-5058-5543 'van der Donk, W.A.' 2 0000-0002-5467-7071 'Zhu, L.' 3 0000-0002-6657-271X # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Chem Sci' ? ? 2041-6520 ? ? 11 ? 12854 12870 'Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways.' 2020 ? 10.1039/d0sc01651a 34094481 ? ? ? ? ? ? ? ? UK ? ? 1 'Chem Sci' ? ? 2041-6520 ? ? 11 ? 12871 12876 'Correction: Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways.' 2020 ? 10.1039/d0sc90208j 34101773 ? ? ? ? ? ? ? ? US ? ? 2 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 107 ? 10430 10435 'Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria.' 2010 ? 10.1073/pnas.0913677107 20479271 ? ? ? ? ? ? ? ? US ? ? 3 Nat.Chem.Biol. ? ? 1552-4469 ? ? 9 ? 157 159 'The sequence of the enterococcal cytolysin imparts unusual lanthionine stereochemistry.' 2013 ? 10.1038/nchembio.1162 23314913 ? ? ? ? ? ? ? ? US ? ? 4 Proc.Natl.Acad.Sci.USA PNASA6 0040 1091-6490 ? ? 114 ? E5424 E5433 'Evolutionary radiation of lanthipeptides in marine cyanobacteria.' 2017 ? 10.1073/pnas.1700990114 28630351 ? ? ? ? ? ? ? ? US ? ? 5 Biochemistry BICHAW 0033 0006-2960 ? ? 51 ? 4271 4279 'Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria.' 2012 ? 10.1021/bi300255s 22574919 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bobeica, S.C.' 1 0000-0001-5058-5543 primary 'Zhu, L.' 2 0000-0002-6657-271X primary 'Acedo, J.Z.' 3 0000-0002-6648-770X primary 'Tang, W.' 4 0000-0002-5739-5416 primary 'van der Donk, W.A.' 5 0000-0002-5467-7071 1 'Bobeica, S.C.' 6 0000-0001-5058-5543 1 'Zhu, L.' 7 0000-0002-6657-271X 1 'Acedo, J.Z.' 8 0000-0002-6648-770X 1 'Tang, W.' 9 0000-0002-5739-5416 1 'van der Donk, W.A.' 10 0000-0002-5467-7071 2 'Li, B.' 11 ? 2 'Sher, D.' 12 ? 2 'Kelly, L.' 13 ? 2 'Shi, Y.' 14 ? 2 'Huang, K.' 15 ? 2 'Knerr, P.J.' 16 ? 2 'Joewono, I.' 17 ? 2 'Rusch, D.' 18 ? 2 'Chisholm, S.W.' 19 ? 2 'van der Donk, W.A.' 20 ? 3 'Tang, W.' 21 ? 3 'van der Donk, W.A.' 22 ? 4 'Cubillos-Ruiz, A.' 23 ? 4 'Berta-Thompson, J.W.' 24 ? 4 'Becker, J.W.' 25 ? 4 'van der Donk, W.A.' 26 ? 4 'Chisholm, S.W.' 27 ? 5 'Tang, W.' 28 ? 5 'van der Donk, W.A.' 29 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Prochlorosin 2.1' _entity.formula_weight 2762.152 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CCI(DBB)GESPG(DAL)AP(DBB)NDYKC(DBB)KGRGPGGCY' _entity_poly.pdbx_seq_one_letter_code_can CCITGESPGAAPTNDYKCTKGRGPGGCY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 CYS n 1 3 ILE n 1 4 DBB n 1 5 GLY n 1 6 GLU n 1 7 SER n 1 8 PRO n 1 9 GLY n 1 10 DAL n 1 11 ALA n 1 12 PRO n 1 13 DBB n 1 14 ASN n 1 15 ASP n 1 16 TYR n 1 17 LYS n 1 18 CYS n 1 19 DBB n 1 20 LYS n 1 21 GLY n 1 22 ARG n 1 23 GLY n 1 24 PRO n 1 25 GLY n 1 26 GLY n 1 27 CYS n 1 28 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 28 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Prochlorococcus marinus str. MIT 9313' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 74547 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6VJQ _struct_ref.pdbx_db_accession 6VJQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6VJQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 28 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6VJQ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 28 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 28 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DBB 'D-peptide linking' . 'D-ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 2 2 '2D 1H-1H TOCSY' 1 isotropic 4 2 2 '2D 1H-1H NOESY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 296 atm 1 6 0 ? 0 'Not defined' Pcn2.1_details 0.1 pH 0 0.1 K 2 296 atm 1 6 0 ? 0 'Not defined' Pcn2.1_D2O_details 0.1 pH 0 0.1 K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '2 mM Prochlorosin 2.1, 90% H2O/10% D2O' '90% H2O/10% D2O' Pcn2.1 solution ? 2 '3 mM Prochlorosin 2.1, 100% D2O' '100% D2O' Pcn2.1_D2O solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model VNMRS _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Agilent _pdbx_nmr_spectrometer.field_strength 750 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6VJQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # _pdbx_nmr_ensemble.entry_id 6VJQ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6VJQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 5 'chemical shift assignment' Sparky ? Goddard 2 'peak picking' Sparky ? Goddard 3 'structure calculation' 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' 4 refinement 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VJQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6VJQ _struct.title 'Solution NMR structure of Prochlorosin 2.1 produced by Prochlorococcus MIT 9313' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VJQ _struct_keywords.text 'lanthipeptide, cyclic peptide, posttranslational modification, RiPP, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id CYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 5 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id CYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 5 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 1 SG ? ? ? 1_555 A DBB 4 CB ? ? A CYS 1 A DBB 4 1_555 ? ? ? ? ? ? ? 1.811 ? ? covale2 covale none ? A CYS 2 SG ? ? ? 1_555 A DAL 10 CB ? ? A CYS 2 A DAL 10 1_555 ? ? ? ? ? ? ? 1.810 ? ? covale3 covale one ? A ILE 3 C ? ? ? 1_555 A DBB 4 N ? ? A ILE 3 A DBB 4 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A DBB 4 C ? ? ? 1_555 A GLY 5 N ? ? A DBB 4 A GLY 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A GLY 9 C ? ? ? 1_555 A DAL 10 N ? ? A GLY 9 A DAL 10 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A DAL 10 C ? ? ? 1_555 A ALA 11 N ? ? A DAL 10 A ALA 11 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale one ? A PRO 12 C ? ? ? 1_555 A DBB 13 N ? ? A PRO 12 A DBB 13 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A DBB 13 C ? ? ? 1_555 A ASN 14 N ? ? A DBB 13 A ASN 14 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale none ? A DBB 13 CB ? ? ? 1_555 A CYS 18 SG ? ? A DBB 13 A CYS 18 1_555 ? ? ? ? ? ? ? 1.807 ? ? covale10 covale one ? A CYS 18 C ? ? ? 1_555 A DBB 19 N ? ? A CYS 18 A DBB 19 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? A DBB 19 C ? ? ? 1_555 A LYS 20 N ? ? A DBB 19 A LYS 20 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale none ? A DBB 19 CB ? ? ? 1_555 A CYS 27 SG ? ? A DBB 19 A CYS 27 1_555 ? ? ? ? ? ? ? 1.808 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6VJQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 DBB 4 4 4 DBB DBB A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 DAL 10 10 10 DAL DAL A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 DBB 13 13 13 DBB DBB A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 DBB 19 19 19 DBB DBB A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 TYR 28 28 28 TYR TYR A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-08 2 'Structure model' 2 0 2020-09-09 3 'Structure model' 2 1 2021-07-14 4 'Structure model' 2 2 2023-06-14 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' author 'Coordinate replacement' 'Chirality error' ;Residue DBB 4 should have been (S) configuration at CB. An additional improper angle was added to the XPLOR patch command to ensure (S) stereochemistry at CB of DBB residues involved in DL (methyl)lanthionine linkages is maintained. ; # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Author supporting evidence' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Database references' 6 4 'Structure model' 'Database references' 7 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' pdbx_entity_instance_feature 3 2 'Structure model' pdbx_nmr_representative 4 2 'Structure model' pdbx_struct_assembly 5 2 'Structure model' pdbx_validate_torsion 6 2 'Structure model' struct_conf 7 2 'Structure model' struct_conn 8 3 'Structure model' citation 9 3 'Structure model' citation_author 10 4 'Structure model' database_2 11 4 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.Cartn_x' 2 2 'Structure model' '_atom_site.Cartn_y' 3 2 'Structure model' '_atom_site.Cartn_z' 4 2 'Structure model' '_pdbx_entity_instance_feature.auth_comp_id' 5 2 'Structure model' '_pdbx_entity_instance_feature.comp_id' 6 2 'Structure model' '_pdbx_nmr_representative.selection_criteria' 7 2 'Structure model' '_pdbx_struct_assembly.details' 8 2 'Structure model' '_pdbx_struct_assembly.method_details' 9 2 'Structure model' '_struct_conn.pdbx_dist_value' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 6VJQ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Prochlorosin 2.1' 2 ? mM 'natural abundance' 2 'Prochlorosin 2.1' 3 ? mM 'natural abundance' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 2 ? ? 27.30 92.46 2 1 ILE A 3 ? ? 71.26 -10.36 3 1 DAL A 10 ? ? -33.70 -39.47 4 1 ALA A 11 ? ? 38.25 66.34 5 1 PRO A 12 ? ? -65.65 7.37 6 1 DBB A 13 ? ? -167.56 -4.97 7 1 ASP A 15 ? ? -164.90 -56.36 8 1 TYR A 16 ? ? -59.29 92.24 9 2 CYS A 2 ? ? 66.48 108.02 10 2 DBB A 4 ? ? 22.02 48.47 11 2 SER A 7 ? ? -39.35 156.12 12 2 DAL A 10 ? ? -33.38 -45.97 13 2 PRO A 12 ? ? -58.37 89.33 14 2 ASP A 15 ? ? -153.33 -63.75 15 2 DBB A 19 ? ? 66.41 -1.02 16 3 CYS A 2 ? ? -77.23 -73.00 17 3 SER A 7 ? ? -34.09 159.00 18 3 DAL A 10 ? ? -67.43 66.87 19 3 ALA A 11 ? ? -105.57 78.77 20 3 TYR A 16 ? ? 85.44 -82.33 21 3 CYS A 18 ? ? -79.39 45.23 22 3 DBB A 19 ? ? 62.85 -70.25 23 4 SER A 7 ? ? -40.69 160.22 24 4 DAL A 10 ? ? -59.72 82.15 25 4 ALA A 11 ? ? -107.22 74.20 26 4 TYR A 16 ? ? -166.24 73.76 27 4 CYS A 18 ? ? -148.18 41.40 28 4 DBB A 19 ? ? 53.19 8.70 29 5 DBB A 4 ? ? 105.84 87.30 30 5 SER A 7 ? ? -22.80 88.40 31 5 DAL A 10 ? ? 46.26 -87.07 32 5 ALA A 11 ? ? 43.59 73.92 33 5 PRO A 12 ? ? -49.47 -87.36 34 5 DBB A 13 ? ? -73.13 9.49 35 5 ASP A 15 ? ? -157.38 -84.48 36 5 DBB A 19 ? ? -30.16 -35.20 37 6 CYS A 2 ? ? -78.51 -75.23 38 6 SER A 7 ? ? -31.24 121.65 39 6 DAL A 10 ? ? 26.83 40.20 40 6 DBB A 13 ? ? -78.55 15.01 41 6 ASP A 15 ? ? 173.82 59.06 42 6 TYR A 16 ? ? -162.88 -76.19 43 6 ARG A 22 ? ? 15.51 53.65 44 7 GLU A 6 ? ? -146.23 -79.75 45 7 SER A 7 ? ? 49.01 167.63 46 7 DAL A 10 ? ? -72.62 51.73 47 7 ALA A 11 ? ? -104.56 73.22 48 7 DBB A 13 ? ? -75.61 40.63 49 7 ASN A 14 ? ? -165.39 17.67 50 7 ASP A 15 ? ? 176.70 -79.30 51 7 TYR A 16 ? ? -23.14 -87.08 52 7 LYS A 17 ? ? -91.74 -84.64 53 7 CYS A 18 ? ? -25.11 135.69 54 7 DBB A 19 ? ? -70.61 40.34 55 8 CYS A 2 ? ? -49.35 -103.67 56 8 SER A 7 ? ? -173.26 -172.87 57 8 DAL A 10 ? ? -23.31 88.80 58 8 ALA A 11 ? ? -114.99 69.64 59 8 ASN A 14 ? ? -140.10 -82.78 60 8 LYS A 17 ? ? -161.74 31.44 61 8 DBB A 19 ? ? 148.57 52.73 62 8 LYS A 20 ? ? -127.00 -132.27 63 8 ARG A 22 ? ? -166.27 18.48 64 9 CYS A 2 ? ? 63.86 101.28 65 9 ILE A 3 ? ? 70.81 -47.07 66 9 DAL A 10 ? ? -35.44 -27.37 67 9 ALA A 11 ? ? 30.94 61.72 68 9 DBB A 13 ? ? -155.16 12.06 69 9 ASP A 15 ? ? -176.72 -24.37 70 10 DBB A 4 ? ? 141.80 3.38 71 10 DAL A 10 ? ? -27.72 141.80 72 10 ALA A 11 ? ? -156.89 68.94 73 10 ASP A 15 ? ? -148.50 20.12 74 10 CYS A 18 ? ? -114.19 58.80 75 10 DBB A 19 ? ? 19.56 63.16 76 10 LYS A 20 ? ? -175.68 127.08 77 10 CYS A 27 ? ? -37.56 -22.37 78 11 DBB A 4 ? ? 150.19 -11.73 79 11 DAL A 10 ? ? 67.67 -81.68 80 11 DBB A 13 ? ? -153.70 1.19 81 11 ASP A 15 ? ? -156.19 -106.58 82 12 CYS A 2 ? ? -66.43 96.77 83 12 ILE A 3 ? ? 53.87 13.22 84 12 PRO A 8 ? ? -47.93 76.32 85 12 DAL A 10 ? ? -26.30 -75.00 86 12 ALA A 11 ? ? 65.11 60.14 87 12 DBB A 13 ? ? -150.29 1.85 88 12 ASP A 15 ? ? -116.39 -111.49 89 12 TYR A 16 ? ? 28.50 -90.79 90 12 LYS A 17 ? ? -152.52 17.35 91 12 DBB A 19 ? ? 143.02 8.33 92 13 CYS A 2 ? ? -76.93 -74.91 93 13 SER A 7 ? ? -34.31 152.74 94 13 DAL A 10 ? ? -32.46 -34.17 95 13 ALA A 11 ? ? 30.84 60.04 96 13 DBB A 13 ? ? -168.94 11.38 97 13 ASP A 15 ? ? -174.06 97.58 98 13 TYR A 16 ? ? 87.09 114.01 99 13 LYS A 17 ? ? 87.62 8.75 100 13 CYS A 18 ? ? -151.19 43.36 101 13 DBB A 19 ? ? 43.34 16.72 102 14 DAL A 10 ? ? -42.26 87.02 103 14 ASP A 15 ? ? -143.63 -53.32 104 14 DBB A 19 ? ? -41.98 -18.61 105 15 CYS A 2 ? ? 58.78 -74.82 106 15 DBB A 4 ? ? 143.87 15.40 107 15 SER A 7 ? ? 154.90 -67.05 108 15 ALA A 11 ? ? -109.72 69.47 109 15 ASP A 15 ? ? -98.23 -148.75 110 15 LYS A 17 ? ? 76.97 -27.31 111 15 CYS A 27 ? ? -61.04 -99.77 112 16 DBB A 4 ? ? 84.82 -31.66 113 16 GLU A 6 ? ? -157.05 62.02 114 16 SER A 7 ? ? -136.39 -68.25 115 16 ALA A 11 ? ? 24.14 62.77 116 16 PRO A 12 ? ? -41.51 -79.35 117 16 TYR A 16 ? ? 88.67 -94.18 118 16 DBB A 19 ? ? -79.80 2.86 119 16 LYS A 20 ? ? -84.52 46.46 120 17 ILE A 3 ? ? 87.56 -10.76 121 17 DBB A 4 ? ? 76.80 -29.56 122 17 GLU A 6 ? ? 82.58 -21.82 123 17 SER A 7 ? ? 149.49 -69.33 124 17 DAL A 10 ? ? 160.95 35.71 125 17 ALA A 11 ? ? -111.44 75.18 126 17 ASP A 15 ? ? -151.72 -101.42 127 17 DBB A 19 ? ? -71.42 14.45 128 18 DAL A 10 ? ? -25.67 -50.67 129 18 ALA A 11 ? ? 26.94 62.59 130 18 PRO A 12 ? ? -45.51 -74.36 131 18 DBB A 13 ? ? -91.21 25.89 132 18 TYR A 16 ? ? 93.69 -137.68 133 19 DAL A 10 ? ? -29.31 -37.13 134 19 ALA A 11 ? ? 33.64 70.52 135 19 DBB A 13 ? ? -150.78 26.64 136 19 ASN A 14 ? ? -145.39 23.07 137 19 ASP A 15 ? ? -114.45 -155.26 138 19 TYR A 16 ? ? -65.94 8.54 139 19 CYS A 18 ? ? -164.84 60.48 140 19 DBB A 19 ? ? 44.23 14.21 141 20 CYS A 2 ? ? 53.91 -85.90 142 20 GLU A 6 ? ? -99.51 -70.93 143 20 SER A 7 ? ? -158.25 -66.78 144 20 DAL A 10 ? ? 157.41 -39.02 145 20 ALA A 11 ? ? -21.82 84.58 146 20 ASP A 15 ? ? -146.44 -69.12 147 20 DBB A 19 ? ? -68.95 7.13 148 20 ARG A 22 ? ? 70.50 60.24 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R37GM058822 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 DBB ? ? DBB ? ? 'SUBJECT OF INVESTIGATION' ? 2 DAL ? ? DAL ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #