HEADER LYASE 17-JAN-20 6VJU TITLE CRYSTAL STRUCTURE OF CYSTATHIONINE BETA SYNTHASE FROM LEGIONELLA TITLE 2 PNEUMOPHILA WITH LLP, PLP, AND HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATHIONINE BETA-LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYSTATHIONINE BETA-LYASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: C3927_14920, DI056_06925, DI105_06930; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: LEPNA.01147.A.B1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 12 ORGANISM_TAXID: 446; SOURCE 13 GENE: C3927_14920, DI056_06925, DI105_06930; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: LEPNA.01147.A.B1 KEYWDS SSGCID, LYASE, PLP, LLP, SYNTHASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 03-APR-24 6VJU 1 HETSYN REVDAT 3 15-NOV-23 6VJU 1 REMARK REVDAT 2 11-OCT-23 6VJU 1 REMARK REVDAT 1 05-FEB-20 6VJU 0 JRNL AUTH M.J.BOLEJACK,D.R.DAVIES,J.ABENDROTH,D.D.LORIMER,P.S.HORANYI, JRNL AUTH 2 T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF CYSTATHIONINE BETA SYNTHASE FROM JRNL TITL 2 LEGIONELLA PNEUMOPHILA WITH LLP, PLP, AND HOMOCYSTEINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 138343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.410 REMARK 3 FREE R VALUE TEST SET COUNT : 1955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2200 - 3.1300 0.98 9989 155 0.1376 0.1598 REMARK 3 2 3.1300 - 2.4900 0.99 9860 123 0.1518 0.1695 REMARK 3 3 2.4900 - 2.1700 1.00 9825 142 0.1465 0.1714 REMARK 3 4 2.1700 - 1.9700 1.00 9777 148 0.1426 0.1990 REMARK 3 5 1.9700 - 1.8300 1.00 9767 125 0.1387 0.1685 REMARK 3 6 1.8300 - 1.7200 1.00 9703 164 0.1457 0.1957 REMARK 3 7 1.7200 - 1.6400 1.00 9717 125 0.1373 0.1797 REMARK 3 8 1.6400 - 1.5700 1.00 9754 132 0.1396 0.1974 REMARK 3 9 1.5700 - 1.5100 1.00 9673 138 0.1475 0.1623 REMARK 3 10 1.5100 - 1.4500 1.00 9696 125 0.1589 0.1719 REMARK 3 11 1.4500 - 1.4100 1.00 9668 152 0.1777 0.2645 REMARK 3 12 1.4100 - 1.3700 1.00 9661 147 0.1962 0.2572 REMARK 3 13 1.3700 - 1.3300 1.00 9644 133 0.2119 0.2476 REMARK 3 14 1.3300 - 1.3000 1.00 9654 146 0.2254 0.2471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 9 THROUGH 30 OR RESID REMARK 3 32 THROUGH 50 OR RESID 52 THROUGH 63 OR REMARK 3 RESID 65 THROUGH 98 OR RESID 100 OR RESID REMARK 3 102 THROUGH 110 OR RESID 112 THROUGH 130 REMARK 3 OR RESID 132 OR RESID 134 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 148 OR RESID 150 REMARK 3 THROUGH 226 OR RESID 228 THROUGH 291 OR REMARK 3 (RESID 293 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 294 REMARK 3 THROUGH 303 OR RESID 305 THROUGH 308 OR REMARK 3 RESID 310 THROUGH 324 OR RESID 501 REMARK 3 THROUGH 701 OR RESID 1101)) REMARK 3 SELECTION : (CHAIN B AND (RESID 9 THROUGH 30 OR RESID REMARK 3 32 THROUGH 50 OR RESID 52 THROUGH 63 OR REMARK 3 RESID 65 THROUGH 98 OR RESID 100 OR RESID REMARK 3 102 THROUGH 110 OR RESID 112 THROUGH 125 REMARK 3 OR (RESID 126 THROUGH 128 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 129 OR (RESID 130 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 132 OR RESID 134 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 148 OR RESID 150 REMARK 3 THROUGH 225 OR (RESID 226 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 228 THROUGH 291 OR RESID 293 REMARK 3 THROUGH 303 OR RESID 305 THROUGH 308 OR REMARK 3 RESID 310 THROUGH 324 OR RESID 501 REMARK 3 THROUGH 801 OR RESID 1401)) REMARK 3 ATOM PAIRS NUMBER : 2748 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138423 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.269 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 4COO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LEPNA.01147.A.B1.PW38321 WAS REMARK 280 CRYSTALLIZED AT 19.49 MG/ML WITH 4 MM PLP, 4 MM SERINE, AND 4 MM REMARK 280 HOMOCYSTEINE AND MIXED 1:1 WITH 0.1 M AMMONIUM ACETATE, 0.1 M REMARK 280 BIS-TRIS HCL PH 5.5, AND 17% (W/V) PEG 10000. CRYO: 25% EG WITH REMARK 280 4 MM EACH LIGAND. TRAY 3295506C1: PUCK MHB1-1, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 8 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 9 CG SD CE REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 ASN A 130 CG OD1 ND2 REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 HIS B 8 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 9 CG SD CE REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLN B 107 CG CD OE1 NE2 REMARK 470 LYS B 293 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 732 O HOH B 754 2.11 REMARK 500 O HOH A 744 O HOH B 645 2.16 REMARK 500 O HOH A 605 O HOH A 760 2.18 REMARK 500 O PRO A 77 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 153 81.83 66.21 REMARK 500 ASN A 160 -70.24 -70.77 REMARK 500 LYS A 311 -113.76 -114.61 REMARK 500 ASP B 153 80.35 66.79 REMARK 500 ASN B 160 -70.47 -69.14 REMARK 500 LYS B 311 -114.78 -116.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HCS A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 509 DBREF1 6VJU A 9 324 UNP A0A2S6F0T8_LEGPN DBREF2 6VJU A A0A2S6F0T8 1 316 DBREF1 6VJU B 9 324 UNP A0A2S6F0T8_LEGPN DBREF2 6VJU B A0A2S6F0T8 1 316 SEQADV 6VJU MET A 1 UNP A0A2S6F0T INITIATING METHIONINE SEQADV 6VJU ALA A 2 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS A 3 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS A 4 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS A 5 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS A 6 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS A 7 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS A 8 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU MET B 1 UNP A0A2S6F0T INITIATING METHIONINE SEQADV 6VJU ALA B 2 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS B 3 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS B 4 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS B 5 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS B 6 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS B 7 UNP A0A2S6F0T EXPRESSION TAG SEQADV 6VJU HIS B 8 UNP A0A2S6F0T EXPRESSION TAG SEQRES 1 A 324 MET ALA HIS HIS HIS HIS HIS HIS MET ILE TYR PRO ASN SEQRES 2 A 324 ILE LEU ALA THR ILE GLY HIS THR PRO VAL VAL LYS ILE SEQRES 3 A 324 ASN ARG LEU GLY LYS ASP LEU GLU CYS GLU LEU TYR ALA SEQRES 4 A 324 LYS CYS GLU PHE PHE ASN PRO GLY GLY SER VAL LLP ASP SEQRES 5 A 324 ARG ILE GLY TYR GLU MET VAL VAL LYS ALA GLU LYS GLU SEQRES 6 A 324 GLY ARG ILE LYS PRO GLY ASP THR LEU ILE GLU PRO THR SEQRES 7 A 324 SER GLY ASN THR GLY ILE GLY ILE ALA LEU ALA GLY ALA SEQRES 8 A 324 VAL LEU GLY TYR LYS VAL ILE ILE THR MET PRO GLU LYS SEQRES 9 A 324 MET SER GLN GLU LYS GLN SER VAL LEU GLU ARG LEU GLY SEQRES 10 A 324 ALA ILE ILE TYR ARG THR PRO THR GLU ALA ALA TYR ASN SEQRES 11 A 324 ASP PRO ASP SER HIS ILE SER LEU ALA LYS LYS LEU GLN SEQRES 12 A 324 ALA GLU ILE PRO ASN SER HIS ILE LEU ASP GLN TYR ALA SEQRES 13 A 324 ASN PRO ASN ASN PRO ASN ALA HIS TYR PHE GLY THR ALA SEQRES 14 A 324 GLN GLU ILE ILE ASP ASP PHE GLY LYS ASP LEU HIS MET SEQRES 15 A 324 VAL VAL ALA GLY VAL GLY THR GLY GLY THR ILE THR GLY SEQRES 16 A 324 ILE ALA LYS ARG LEU LYS GLU PHE ASN PRO ALA ILE LYS SEQRES 17 A 324 ILE ILE GLY ALA ASP PRO GLU GLY SER ILE LEU GLY GLY SEQRES 18 A 324 GLY THR GLU ILE LYS SER TYR HIS VAL GLU GLY ILE GLY SEQRES 19 A 324 TYR ASP PHE PHE PRO ASP VAL LEU ASP ASN THR LEU ILE SEQRES 20 A 324 ASP ALA TYR ILE LYS THR ASN ASP ALA ASP SER PHE ARG SEQRES 21 A 324 THR ALA ARG ARG LEU ILE LYS GLU GLU GLY LEU LEU ILE SEQRES 22 A 324 GLY GLY SER CYS GLY ALA ALA MET TRP ALA ALA LEU GLN SEQRES 23 A 324 ALA ALA LYS SER LEU SER LYS GLY GLN LYS CYS LEU VAL SEQRES 24 A 324 ILE LEU PRO ASP SER ILE ARG ASN TYR MET SER LYS PHE SEQRES 25 A 324 ALA ASN ASP GLU TRP MET LYS GLU MET GLY PHE LEU SEQRES 1 B 324 MET ALA HIS HIS HIS HIS HIS HIS MET ILE TYR PRO ASN SEQRES 2 B 324 ILE LEU ALA THR ILE GLY HIS THR PRO VAL VAL LYS ILE SEQRES 3 B 324 ASN ARG LEU GLY LYS ASP LEU GLU CYS GLU LEU TYR ALA SEQRES 4 B 324 LYS CYS GLU PHE PHE ASN PRO GLY GLY SER VAL LYS ASP SEQRES 5 B 324 ARG ILE GLY TYR GLU MET VAL VAL LYS ALA GLU LYS GLU SEQRES 6 B 324 GLY ARG ILE LYS PRO GLY ASP THR LEU ILE GLU PRO THR SEQRES 7 B 324 SER GLY ASN THR GLY ILE GLY ILE ALA LEU ALA GLY ALA SEQRES 8 B 324 VAL LEU GLY TYR LYS VAL ILE ILE THR MET PRO GLU LYS SEQRES 9 B 324 MET SER GLN GLU LYS GLN SER VAL LEU GLU ARG LEU GLY SEQRES 10 B 324 ALA ILE ILE TYR ARG THR PRO THR GLU ALA ALA TYR ASN SEQRES 11 B 324 ASP PRO ASP SER HIS ILE SER LEU ALA LYS LYS LEU GLN SEQRES 12 B 324 ALA GLU ILE PRO ASN SER HIS ILE LEU ASP GLN TYR ALA SEQRES 13 B 324 ASN PRO ASN ASN PRO ASN ALA HIS TYR PHE GLY THR ALA SEQRES 14 B 324 GLN GLU ILE ILE ASP ASP PHE GLY LYS ASP LEU HIS MET SEQRES 15 B 324 VAL VAL ALA GLY VAL GLY THR GLY GLY THR ILE THR GLY SEQRES 16 B 324 ILE ALA LYS ARG LEU LYS GLU PHE ASN PRO ALA ILE LYS SEQRES 17 B 324 ILE ILE GLY ALA ASP PRO GLU GLY SER ILE LEU GLY GLY SEQRES 18 B 324 GLY THR GLU ILE LYS SER TYR HIS VAL GLU GLY ILE GLY SEQRES 19 B 324 TYR ASP PHE PHE PRO ASP VAL LEU ASP ASN THR LEU ILE SEQRES 20 B 324 ASP ALA TYR ILE LYS THR ASN ASP ALA ASP SER PHE ARG SEQRES 21 B 324 THR ALA ARG ARG LEU ILE LYS GLU GLU GLY LEU LEU ILE SEQRES 22 B 324 GLY GLY SER CYS GLY ALA ALA MET TRP ALA ALA LEU GLN SEQRES 23 B 324 ALA ALA LYS SER LEU SER LYS GLY GLN LYS CYS LEU VAL SEQRES 24 B 324 ILE LEU PRO ASP SER ILE ARG ASN TYR MET SER LYS PHE SEQRES 25 B 324 ALA ASN ASP GLU TRP MET LYS GLU MET GLY PHE LEU MODRES 6VJU LLP A 51 LYS MODIFIED RESIDUE HET LLP A 51 24 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET ACT A 504 4 HET ACT A 505 4 HET EDO A 506 4 HET ACT A 507 4 HET ACT A 508 4 HET HCS A 509 8 HET ACT A 510 8 HET EDO B 501 4 HET EDO B 502 4 HET EDO B 503 4 HET EDO B 504 4 HET EDO B 505 4 HET ACT B 506 4 HET PLP B 507 31 HET EDO B 508 4 HET ACT B 509 4 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM HCS 2-AMINO-4-MERCAPTO-BUTYRIC ACID HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN HCS L-HOMOCYSTEINE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 3 EDO 10(C2 H6 O2) FORMUL 6 ACT 7(C2 H3 O2 1-) FORMUL 11 HCS C4 H9 N O2 S FORMUL 19 PLP C8 H10 N O6 P FORMUL 22 HOH *598(H2 O) HELIX 1 AA1 ASN A 13 ILE A 18 5 6 HELIX 2 AA2 PHE A 43 ASN A 45 5 3 HELIX 3 AA3 LLP A 51 GLU A 65 1 15 HELIX 4 AA4 GLY A 80 GLY A 94 1 15 HELIX 5 AA5 SER A 106 LEU A 116 1 11 HELIX 6 AA6 SER A 134 ILE A 146 1 13 HELIX 7 AA7 PRO A 158 GLY A 167 1 10 HELIX 8 AA8 GLY A 167 GLY A 177 1 11 HELIX 9 AA9 GLY A 190 ASN A 204 1 15 HELIX 10 AB1 ASP A 243 ILE A 247 5 5 HELIX 11 AB2 ASN A 254 GLY A 270 1 17 HELIX 12 AB3 GLY A 274 ALA A 288 1 15 HELIX 13 AB4 LYS A 289 LEU A 291 5 3 HELIX 14 AB5 SER A 304 MET A 309 5 6 HELIX 15 AB6 ASN A 314 MET A 321 1 8 HELIX 16 AB7 ASN B 13 ILE B 18 5 6 HELIX 17 AB8 PHE B 43 ASN B 45 5 3 HELIX 18 AB9 LYS B 51 GLU B 65 1 15 HELIX 19 AC1 GLY B 80 GLY B 94 1 15 HELIX 20 AC2 SER B 106 LEU B 116 1 11 HELIX 21 AC3 SER B 134 ILE B 146 1 13 HELIX 22 AC4 PRO B 158 GLY B 167 1 10 HELIX 23 AC5 GLY B 167 GLY B 177 1 11 HELIX 24 AC6 GLY B 190 ASN B 204 1 15 HELIX 25 AC7 ASP B 243 ILE B 247 5 5 HELIX 26 AC8 ASN B 254 GLY B 270 1 17 HELIX 27 AC9 GLY B 274 ALA B 288 1 15 HELIX 28 AD1 LYS B 289 LEU B 291 5 3 HELIX 29 AD2 SER B 304 MET B 309 5 6 HELIX 30 AD3 ASN B 314 MET B 321 1 8 SHEET 1 AA1 7 ALA A 249 THR A 253 0 SHEET 2 AA1 7 LYS A 208 PRO A 214 1 N GLY A 211 O ILE A 251 SHEET 3 AA1 7 MET A 182 GLY A 186 1 N VAL A 183 O ILE A 210 SHEET 4 AA1 7 LYS A 296 LEU A 301 1 O LEU A 298 N VAL A 184 SHEET 5 AA1 7 GLU A 36 CYS A 41 1 N LYS A 40 O VAL A 299 SHEET 6 AA1 7 VAL A 23 LYS A 25 -1 N VAL A 24 O ALA A 39 SHEET 7 AA1 7 ILE B 10 TYR B 11 1 O TYR B 11 N VAL A 23 SHEET 1 AA2 4 ILE A 119 THR A 123 0 SHEET 2 AA2 4 LYS A 96 PRO A 102 1 N ILE A 99 O ILE A 119 SHEET 3 AA2 4 THR A 73 PRO A 77 1 N LEU A 74 O LYS A 96 SHEET 4 AA2 4 SER A 149 HIS A 150 1 O HIS A 150 N ILE A 75 SHEET 1 AA3 6 VAL B 23 LYS B 25 0 SHEET 2 AA3 6 GLU B 36 CYS B 41 -1 O ALA B 39 N VAL B 24 SHEET 3 AA3 6 LYS B 296 LEU B 301 1 O VAL B 299 N LYS B 40 SHEET 4 AA3 6 MET B 182 GLY B 186 1 N MET B 182 O LEU B 298 SHEET 5 AA3 6 LYS B 208 PRO B 214 1 O ILE B 210 N VAL B 183 SHEET 6 AA3 6 ALA B 249 THR B 253 1 O ILE B 251 N GLY B 211 SHEET 1 AA4 4 ILE B 119 THR B 123 0 SHEET 2 AA4 4 LYS B 96 PRO B 102 1 N ILE B 99 O ILE B 119 SHEET 3 AA4 4 THR B 73 PRO B 77 1 N LEU B 74 O LYS B 96 SHEET 4 AA4 4 SER B 149 HIS B 150 1 O HIS B 150 N ILE B 75 LINK C VAL A 50 N LLP A 51 1555 1555 1.33 LINK C LLP A 51 N ASP A 52 1555 1555 1.33 LINK NZ BLYS B 51 C4ABPLP B 507 1555 1555 1.47 SITE 1 AC1 3 LEU A 15 TYR A 56 HOH A 803 SITE 1 AC2 4 GLU A 103 LYS A 104 MET A 105 LYS A 311 SITE 1 AC3 5 ASN A 162 TYR A 165 LYS A 198 HOH A 682 SITE 2 AC3 5 HOH A 717 SITE 1 AC4 6 LEU A 219 GLY A 220 GLY A 221 ASN A 244 SITE 2 AC4 6 HOH A 711 HOH A 730 SITE 1 AC5 8 LLP A 51 THR A 78 SER A 79 ASN A 81 SITE 2 AC5 8 THR A 82 GLN A 154 HOH A 644 HOH A 684 SITE 1 AC6 2 HIS A 20 TYR B 11 SITE 1 AC7 7 THR A 17 GLY A 19 HIS A 20 THR A 21 SITE 2 AC7 7 PHE A 44 ASN A 45 PHE B 44 SITE 1 AC8 5 HIS A 20 ASP A 174 ASP A 175 HOH A 675 SITE 2 AC8 5 HIS B 8 SITE 1 AC9 13 TYR A 250 LYS A 252 HOH A 621 HOH A 622 SITE 2 AC9 13 HOH A 648 HOH A 793 HOH A 855 GLY B 220 SITE 3 AC9 13 TYR B 250 ILE B 251 LYS B 252 HOH B 650 SITE 4 AC9 13 HOH B 657 SITE 1 AD1 9 PHE A 43 PHE A 44 ASN A 45 GLY A 48 SITE 2 AD1 9 HOH A 607 PHE B 43 PHE B 44 ASN B 45 SITE 3 AD1 9 HOH B 647 SITE 1 AD2 3 ILE A 10 PHE B 176 ASP B 179 SITE 1 AD3 9 SER B 79 LYS B 104 MET B 105 GLU B 231 SITE 2 AD3 9 GLY B 232 ILE B 233 GLY B 234 TYR B 235 SITE 3 AD3 9 HOH B 625 SITE 1 AD4 6 LEU B 219 GLY B 221 ASN B 244 HOH B 620 SITE 2 AD4 6 HOH B 818 HOH B 824 SITE 1 AD5 3 ASN B 13 TYR B 56 HOH B 675 SITE 1 AD6 4 ASP A 174 HIS B 8 GLU B 320 HOH B 618 SITE 1 AD7 7 LYS B 51 THR B 78 SER B 79 ASN B 81 SITE 2 AD7 7 THR B 82 GLN B 154 PLP B 507 SITE 1 AD8 18 LYS B 51 SER B 79 ASN B 81 GLY B 188 SITE 2 AD8 18 THR B 189 GLY B 190 GLY B 191 THR B 192 SITE 3 AD8 18 GLY B 232 ILE B 233 SER B 276 PRO B 302 SITE 4 AD8 18 ASP B 303 ACT B 506 HOH B 612 HOH B 616 SITE 5 AD8 18 HOH B 655 HOH B 668 SITE 1 AD9 3 LEU B 15 ALA B 16 ILE B 18 SITE 1 AE1 8 PHE A 44 THR B 17 GLY B 19 HIS B 20 SITE 2 AE1 8 THR B 21 PHE B 44 ASN B 45 HOH B 779 CRYST1 65.350 91.790 93.770 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010664 0.00000