HEADER CELL CYCLE 18-JAN-20 6VK2 TITLE NMR SOLUTION STRUCTURE OF GRB2-SH2 DOMAIN AT PH 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADAPTER PROTEIN GRB2,PROTEIN ASH,SH2/SH3 ADAPTER GRB2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRB2, ASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS GRB2, SH2 DOMAIN, DYNAMICS, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SANCHES,I.P.CARUSO,F.A.MELO,F.C.L.ALMEIDA REVDAT 5 15-MAY-24 6VK2 1 REMARK REVDAT 4 14-JUN-23 6VK2 1 REMARK REVDAT 3 19-AUG-20 6VK2 1 JRNL REVDAT 2 05-AUG-20 6VK2 1 REMARK REVDAT 1 29-JUL-20 6VK2 0 JRNL AUTH K.SANCHES,I.P.CARUSO,F.C.L.ALMEIDA,F.A.MELO JRNL TITL THE DYNAMICS OF FREE AND PHOSPHOPEPTIDE-BOUND GRB2-SH2 JRNL TITL 2 REVEALS TWO DYNAMICALLY INDEPENDENT SUBDOMAINS AND AN JRNL TITL 3 ENCOUNTER COMPLEX WITH FUZZY INTERACTIONS. JRNL REF SCI REP V. 10 13040 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 32747626 JRNL DOI 10.1038/S41598-020-70034-W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SANCHES,I.P.CARUSO,F.C.L.ALMEIDA,F.A.MELO REMARK 1 TITL NMR ASSIGNMENT OF FREE 1H, 15N AND 13C-GRB2-SH2 DOMAIN. REMARK 1 REF BIOMOL NMR ASSIGN V. 13 295 2019 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 31028611 REMARK 1 DOI 10.1007/S12104-019-09894-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246531. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 138.2 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 MM SODIUM CHLORIDE, 20 MM REMARK 210 SODIUM PHOSPHATE, 1 MM EDTA, 1 REMARK 210 MM PMSF, 5 MM SODIUM AZIDE, 300 REMARK 210 UM [U-100% 13C; U-100% 15N] GRB2- REMARK 210 SH2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CS-ROSETTA 3.3, CCPNMR ANALYSIS, REMARK 210 ARIA REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 6631 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 28 H LYS A 46 1.52 REMARK 500 O GLY A 27 H ARG A 95 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 7 -104.91 55.08 REMARK 500 1 LEU A 66 -56.92 -138.31 REMARK 500 2 PHE A 7 -105.34 49.93 REMARK 500 2 LEU A 66 -61.13 -134.19 REMARK 500 2 PHE A 71 -169.00 -129.20 REMARK 500 2 SER A 85 156.85 -49.83 REMARK 500 3 PHE A 7 -105.04 48.53 REMARK 500 3 LEU A 66 -63.32 -135.06 REMARK 500 3 TRP A 67 -97.02 -91.54 REMARK 500 3 VAL A 68 -56.31 -139.19 REMARK 500 4 PRO A 5 46.62 -78.15 REMARK 500 4 LEU A 66 -62.92 -135.81 REMARK 500 5 PHE A 7 -105.74 49.78 REMARK 500 5 LEU A 66 -67.14 -131.43 REMARK 500 5 TRP A 67 -91.96 -91.83 REMARK 500 5 VAL A 68 -59.70 -139.85 REMARK 500 5 PHE A 71 -166.67 -112.29 REMARK 500 6 HIS A 25 87.28 -60.82 REMARK 500 6 LEU A 66 -63.57 -134.18 REMARK 500 6 TRP A 67 -97.96 -91.05 REMARK 500 6 VAL A 68 -56.23 -139.87 REMARK 500 7 PHE A 7 -100.12 52.79 REMARK 500 7 LYS A 10 54.29 -91.83 REMARK 500 7 LEU A 66 -62.98 -136.54 REMARK 500 7 TRP A 67 -103.19 -89.06 REMARK 500 8 PHE A 7 -77.99 60.09 REMARK 500 8 LEU A 66 -62.34 -128.18 REMARK 500 8 TRP A 67 -91.58 -96.59 REMARK 500 8 VAL A 68 -61.33 -135.43 REMARK 500 9 PHE A 7 -99.98 52.34 REMARK 500 9 LYS A 10 56.13 -91.65 REMARK 500 9 LEU A 66 -56.80 -135.19 REMARK 500 10 PRO A 5 46.53 -77.63 REMARK 500 10 LEU A 66 -58.58 -132.36 REMARK 500 10 PHE A 71 -168.86 -123.24 REMARK 500 11 PHE A 7 -99.11 51.62 REMARK 500 11 LEU A 66 -60.77 -131.96 REMARK 500 11 TRP A 67 -96.04 -93.80 REMARK 500 12 PHE A 7 -105.60 48.82 REMARK 500 12 LEU A 66 -64.90 -133.76 REMARK 500 12 TRP A 67 -97.53 -89.96 REMARK 500 12 VAL A 68 -58.82 -142.30 REMARK 500 13 PHE A 7 -121.57 60.94 REMARK 500 13 ALA A 37 71.97 -154.40 REMARK 500 13 LEU A 66 -70.42 -102.38 REMARK 500 13 TRP A 67 -87.92 -102.14 REMARK 500 13 VAL A 68 -35.13 -135.32 REMARK 500 14 PHE A 7 -99.28 53.75 REMARK 500 14 LEU A 66 -63.95 -133.84 REMARK 500 14 PHE A 71 -167.47 -119.10 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27781 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF GRB2-SH2 DOMAIN AT PH 7 REMARK 900 RELATED ID: 1BMB RELATED DB: PDB REMARK 900 RELATED ID: 1BM2 RELATED DB: PDB REMARK 900 RELATED ID: 1FHS RELATED DB: PDB REMARK 900 RELATED ID: 1JYQ RELATED DB: PDB REMARK 900 RELATED ID: 1JYR RELATED DB: PDB REMARK 900 RELATED ID: 1JYU RELATED DB: PDB REMARK 900 RELATED ID: 1QG1 RELATED DB: PDB REMARK 900 RELATED ID: 1TZE RELATED DB: PDB REMARK 900 RELATED ID: 1ZFP RELATED DB: PDB REMARK 900 RELATED ID: 2AOA RELATED DB: PDB REMARK 900 RELATED ID: 2H46 RELATED DB: PDB REMARK 900 RELATED ID: 2H5K RELATED DB: PDB REMARK 900 RELATED ID: 2HOW RELATED DB: PDB REMARK 900 RELATED ID: 3C7I RELATED DB: PDB REMARK 900 RELATED ID: 3IMD RELATED DB: PDB REMARK 900 RELATED ID: 3IMJ RELATED DB: PDB REMARK 900 RELATED ID: 3IN7 RELATED DB: PDB REMARK 900 RELATED ID: 3KFJ RELATED DB: PDB REMARK 900 RELATED ID: 3MXC RELATED DB: PDB REMARK 900 RELATED ID: 3N7Y RELATED DB: PDB REMARK 900 RELATED ID: 3N84 RELATED DB: PDB REMARK 900 RELATED ID: 3N8M RELATED DB: PDB REMARK 900 RELATED ID: 3OV1 RELATED DB: PDB REMARK 900 RELATED ID: 3S8L RELATED DB: PDB REMARK 900 RELATED ID: 3WA4 RELATED DB: PDB DBREF 6VK2 A 1 96 UNP P62993 GRB2_HUMAN 55 150 SEQRES 1 A 96 MET LYS PRO HIS PRO TRP PHE PHE GLY LYS ILE PRO ARG SEQRES 2 A 96 ALA LYS ALA GLU GLU MET LEU SER LYS GLN ARG HIS ASP SEQRES 3 A 96 GLY ALA PHE LEU ILE ARG GLU SER GLU SER ALA PRO GLY SEQRES 4 A 96 ASP PHE SER LEU SER VAL LYS PHE GLY ASN ASP VAL GLN SEQRES 5 A 96 HIS PHE LYS VAL LEU ARG ASP GLY ALA GLY LYS TYR PHE SEQRES 6 A 96 LEU TRP VAL VAL LYS PHE ASN SER LEU ASN GLU LEU VAL SEQRES 7 A 96 ASP TYR HIS ARG SER THR SER VAL SER ARG ASN GLN GLN SEQRES 8 A 96 ILE PHE LEU ARG ASP HELIX 1 AA1 PRO A 12 ARG A 24 1 13 HELIX 2 AA2 SER A 73 THR A 84 1 12 SHEET 1 AA1 4 ALA A 28 GLU A 33 0 SHEET 2 AA1 4 PHE A 41 PHE A 47 -1 O LYS A 46 N ALA A 28 SHEET 3 AA1 4 ASP A 50 ARG A 58 -1 O PHE A 54 N LEU A 43 SHEET 4 AA1 4 TYR A 64 PHE A 65 -1 O PHE A 65 N LEU A 57 CISPEP 1 PHE A 7 PHE A 8 4 -16.87 CISPEP 2 PHE A 7 PHE A 8 6 9.87 CISPEP 3 PHE A 7 PHE A 8 10 13.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1