HEADER TRANSFERASE 19-JAN-20 6VKA TITLE HIV INTEGRASE CORE DOMAIN (IN) IN COMPLEX WITH DIMER-SPANNING LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 50-212; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRUS, INHIBITOR, COMPLEX, HIV INTEGRASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.GORMAN,M.W.PARKER REVDAT 2 30-OCT-24 6VKA 1 REMARK REVDAT 1 20-JAN-21 6VKA 0 JRNL AUTH M.SCANLON,M.A.GORMAN JRNL TITL HIV INTEGRASE CORE DOMAIN (IN) IN COMPLEX WITH DIMERIC JRNL TITL 2 SPANNING INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 19.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 23848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.530 REMARK 3 FREE R VALUE TEST SET COUNT : 4020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.6744 - 5.0516 0.91 2156 206 0.1663 0.2450 REMARK 3 2 5.0516 - 4.0136 0.91 2186 220 0.1289 0.1868 REMARK 3 3 4.0136 - 3.5074 0.91 2181 204 0.1337 0.1974 REMARK 3 4 3.5074 - 3.1872 0.91 2185 196 0.1457 0.1968 REMARK 3 5 3.1872 - 2.9590 0.91 2154 194 0.1353 0.2057 REMARK 3 6 2.9590 - 2.7847 0.90 2198 212 0.1367 0.1934 REMARK 3 7 2.7847 - 2.6454 0.90 2140 206 0.1499 0.2189 REMARK 3 8 2.6454 - 2.5303 0.90 2152 204 0.1466 0.2453 REMARK 3 9 2.5303 - 2.4330 0.90 2126 196 0.1540 0.2148 REMARK 3 10 2.4330 - 2.3491 0.90 2170 208 0.1563 0.2740 REMARK 3 11 2.3491 - 2.2756 0.90 2163 206 0.1661 0.2155 REMARK 3 12 2.2756 - 2.2106 0.91 2129 184 0.1660 0.2241 REMARK 3 13 2.2106 - 2.1524 0.91 2196 187 0.1826 0.2044 REMARK 3 14 2.1524 - 2.1000 0.90 2141 195 0.1835 0.2522 REMARK 3 15 2.1000 - 2.0522 0.90 2128 198 0.1956 0.2457 REMARK 3 16 2.0522 - 2.0086 0.90 2144 196 0.2141 0.2912 REMARK 3 17 2.0086 - 1.9684 0.89 2171 208 0.2043 0.3096 REMARK 3 18 1.9684 - 1.9313 0.89 2058 200 0.2279 0.2658 REMARK 3 19 1.9313 - 1.8968 0.89 2173 198 0.2407 0.2744 REMARK 3 20 1.8968 - 1.8646 0.89 2125 194 0.2435 0.3022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2344 REMARK 3 ANGLE : 1.511 3175 REMARK 3 CHIRALITY : 0.061 352 REMARK 3 PLANARITY : 0.009 387 REMARK 3 DIHEDRAL : 17.272 1342 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 46.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BI-PYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 200 MM REMARK 280 POTASSIUM IODIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.02550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.53825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.51275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -166.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 MET A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 GLU A 53 REMARK 465 VAL A 54 REMARK 465 ASP A 55 REMARK 465 SER A 56 REMARK 465 TYR A 143 REMARK 465 ASN A 144 REMARK 465 PRO A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 GLN A 148 REMARK 465 GLY A 149 REMARK 465 VAL A 150 REMARK 465 ILE A 151 REMARK 465 LYS A 188 REMARK 465 GLY A 189 REMARK 465 GLY A 190 REMARK 465 ILE A 191 REMARK 465 LYS A 211 REMARK 465 GLU A 212 REMARK 465 GLY B 48 REMARK 465 SER B 49 REMARK 465 MET B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 GLU B 53 REMARK 465 VAL B 54 REMARK 465 ASP B 55 REMARK 465 SER B 56 REMARK 465 PRO B 90 REMARK 465 ALA B 91 REMARK 465 GLU B 92 REMARK 465 TYR B 143 REMARK 465 ASN B 144 REMARK 465 PRO B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 GLY B 149 REMARK 465 VAL B 150 REMARK 465 LYS B 211 REMARK 465 GLU B 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN B 137 O HOH B 401 1.47 REMARK 500 H GLY B 59 O4 SO4 B 305 1.48 REMARK 500 OD1 ASN B 117 HG SER B 119 1.49 REMARK 500 HZ3 LYS B 111 O3 SO4 B 305 1.54 REMARK 500 HE22 GLN A 164 O HOH A 408 1.56 REMARK 500 O HOH A 448 O HOH B 441 1.86 REMARK 500 O HOH A 446 O HOH A 449 2.05 REMARK 500 O SER A 57 O HOH A 401 2.05 REMARK 500 OE1 GLN A 137 O HOH A 402 2.07 REMARK 500 OG1 THR B 66 O4 SO4 B 303 2.10 REMARK 500 OD1 ASN A 120 O HOH A 403 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 434 O HOH B 436 1565 1.82 REMARK 500 O HOH B 412 O HOH B 431 3554 1.87 REMARK 500 O HOH A 408 O HOH A 411 3654 2.04 REMARK 500 O HOH A 434 O HOH B 428 1565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 142 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO B 142 C - N - CA ANGL. DEV. = 19.8 DEGREES REMARK 500 PRO B 142 C - N - CD ANGL. DEV. = -26.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QZV A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 308 DBREF 6VKA A 50 212 UNP F2WR39 F2WR39_9HIV1 50 212 DBREF 6VKA B 50 212 UNP F2WR39 F2WR39_9HIV1 50 212 SEQADV 6VKA GLY A 48 UNP F2WR39 EXPRESSION TAG SEQADV 6VKA SER A 49 UNP F2WR39 EXPRESSION TAG SEQADV 6VKA GLU A 53 UNP F2WR39 GLN 53 ENGINEERED MUTATION SEQADV 6VKA SER A 56 UNP F2WR39 CYS 56 ENGINEERED MUTATION SEQADV 6VKA GLU A 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VKA LYS A 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQADV 6VKA GLU A 209 UNP F2WR39 GLN 209 ENGINEERED MUTATION SEQADV 6VKA GLY B 48 UNP F2WR39 EXPRESSION TAG SEQADV 6VKA SER B 49 UNP F2WR39 EXPRESSION TAG SEQADV 6VKA GLU B 53 UNP F2WR39 GLN 53 ENGINEERED MUTATION SEQADV 6VKA SER B 56 UNP F2WR39 CYS 56 ENGINEERED MUTATION SEQADV 6VKA GLU B 131 UNP F2WR39 TRP 131 ENGINEERED MUTATION SEQADV 6VKA LYS B 185 UNP F2WR39 PHE 185 ENGINEERED MUTATION SEQADV 6VKA GLU B 209 UNP F2WR39 GLN 209 ENGINEERED MUTATION SEQRES 1 A 165 GLY SER MET HIS GLY GLU VAL ASP SER SER PRO GLY ILE SEQRES 2 A 165 TRP GLN LEU ASP CSO THR HIS LEU GLU GLY LYS VAL ILE SEQRES 3 A 165 LEU VAL ALA VAL HIS VAL ALA SER GLY TYR ILE GLU ALA SEQRES 4 A 165 GLU VAL ILE PRO ALA GLU THR GLY GLN GLU THR ALA TYR SEQRES 5 A 165 PHE LEU LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS THR SEQRES 6 A 165 VAL HIS THR ASP ASN GLY SER ASN PHE THR SER THR THR SEQRES 7 A 165 VAL LYS ALA ALA CYS GLU TRP ALA GLY ILE LYS GLN GLU SEQRES 8 A 165 PHE GLY ILE PRO TYR ASN PRO GLN SER GLN GLY VAL ILE SEQRES 9 A 165 GLU SER MET ASN LYS GLU LEU LYS LYS ILE ILE GLY GLN SEQRES 10 A 165 VAL ARG ASP GLN ALA GLU HIS LEU LYS THR ALA VAL GLN SEQRES 11 A 165 MET ALA VAL PHE ILE HIS ASN LYS LYS ARG LYS GLY GLY SEQRES 12 A 165 ILE GLY GLY TYR SER ALA GLY GLU ARG ILE VAL ASP ILE SEQRES 13 A 165 ILE ALA THR ASP ILE GLU THR LYS GLU SEQRES 1 B 165 GLY SER MET HIS GLY GLU VAL ASP SER SER PRO GLY ILE SEQRES 2 B 165 TRP GLN LEU ASP CSO THR HIS LEU GLU GLY LYS VAL ILE SEQRES 3 B 165 LEU VAL ALA VAL HIS VAL ALA SER GLY TYR ILE GLU ALA SEQRES 4 B 165 GLU VAL ILE PRO ALA GLU THR GLY GLN GLU THR ALA TYR SEQRES 5 B 165 PHE LEU LEU LYS LEU ALA GLY ARG TRP PRO VAL LYS THR SEQRES 6 B 165 VAL HIS THR ASP ASN GLY SER ASN PHE THR SER THR THR SEQRES 7 B 165 VAL LYS ALA ALA CYS GLU TRP ALA GLY ILE LYS GLN GLU SEQRES 8 B 165 PHE GLY ILE PRO TYR ASN PRO GLN SER GLN GLY VAL ILE SEQRES 9 B 165 GLU SER MET ASN LYS GLU LEU LYS LYS ILE ILE GLY GLN SEQRES 10 B 165 VAL ARG ASP GLN ALA GLU HIS LEU LYS THR ALA VAL GLN SEQRES 11 B 165 MET ALA VAL PHE ILE HIS ASN LYS LYS ARG LYS GLY GLY SEQRES 12 B 165 ILE GLY GLY TYR SER ALA GLY GLU ARG ILE VAL ASP ILE SEQRES 13 B 165 ILE ALA THR ASP ILE GLU THR LYS GLU MODRES 6VKA CSO A 65 CYS MODIFIED RESIDUE MODRES 6VKA CSO B 65 CYS MODIFIED RESIDUE HET CSO A 65 11 HET CSO B 65 11 HET IOD A 301 1 HET IOD A 302 1 HET QZV A 303 96 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET IOD A 309 1 HET IOD B 301 1 HET IOD B 302 1 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HET IOD B 308 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM IOD IODIDE ION HETNAM QZV 2,2'-{ETHANE-1,2-DIYLBIS[OXYETHANE-2,1-DIYLCARBAMOYL-4, HETNAM 2 QZV 1-PHENYLENEETHYNE-2,1-DIYL(5-METHYL-1-BENZOFURAN-2,3- HETNAM 3 QZV DIYL)]}DIACETIC ACID HETNAM SO4 SULFATE ION FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 IOD 6(I 1-) FORMUL 5 QZV C46 H40 N2 O10 FORMUL 6 SO4 10(O4 S 2-) FORMUL 20 HOH *92(H2 O) HELIX 1 AA1 GLY A 94 TRP A 108 1 15 HELIX 2 AA2 GLY A 118 THR A 122 5 5 HELIX 3 AA3 SER A 123 GLY A 134 1 12 HELIX 4 AA4 SER A 153 ARG A 166 1 14 HELIX 5 AA5 ASP A 167 ALA A 169 5 3 HELIX 6 AA6 HIS A 171 LYS A 186 1 16 HELIX 7 AA7 SER A 195 GLU A 209 1 15 HELIX 8 AA8 GLY B 94 GLY B 106 1 13 HELIX 9 AA9 GLY B 118 THR B 122 5 5 HELIX 10 AB1 SER B 123 GLY B 134 1 12 HELIX 11 AB2 SER B 153 ARG B 166 1 14 HELIX 12 AB3 ASP B 167 ALA B 169 5 3 HELIX 13 AB4 HIS B 171 LYS B 186 1 16 HELIX 14 AB5 SER B 195 THR B 210 1 16 SHEET 1 AA1 5 ILE A 84 ILE A 89 0 SHEET 2 AA1 5 LYS A 71 HIS A 78 -1 N LEU A 74 O GLU A 87 SHEET 3 AA1 5 ILE A 60 LEU A 68 -1 N THR A 66 O ILE A 73 SHEET 4 AA1 5 THR A 112 THR A 115 1 O HIS A 114 N TRP A 61 SHEET 5 AA1 5 LYS A 136 PHE A 139 1 O LYS A 136 N VAL A 113 SHEET 1 AA2 5 ILE B 84 VAL B 88 0 SHEET 2 AA2 5 LYS B 71 HIS B 78 -1 N LEU B 74 O GLU B 87 SHEET 3 AA2 5 ILE B 60 LEU B 68 -1 N THR B 66 O ILE B 73 SHEET 4 AA2 5 THR B 112 THR B 115 1 O THR B 112 N TRP B 61 SHEET 5 AA2 5 LYS B 136 PHE B 139 1 O LYS B 136 N VAL B 113 LINK C ASP A 64 N CSO A 65 1555 1555 1.33 LINK C CSO A 65 N THR A 66 1555 1555 1.33 LINK C ASP B 64 N CSO B 65 1555 1555 1.33 LINK C CSO B 65 N THR B 66 1555 1555 1.32 CISPEP 1 ILE B 141 PRO B 142 0 18.22 SITE 1 AC1 2 GLY A 70 TYR B 194 SITE 1 AC2 19 GLN A 95 GLU A 96 TYR A 99 THR A 125 SITE 2 AC2 19 ALA A 129 ALA A 169 GLU A 170 HIS A 171 SITE 3 AC2 19 THR A 174 GLN B 95 GLU B 96 ALA B 98 SITE 4 AC2 19 TYR B 99 THR B 125 ALA B 129 GLU B 170 SITE 5 AC2 19 HIS B 171 LYS B 173 THR B 174 SITE 1 AC3 5 THR A 66 HIS A 67 LYS A 159 HOH A 404 SITE 2 AC3 5 HOH B 402 SITE 1 AC4 7 THR A 93 GLY A 94 SER A 123 THR A 124 SITE 2 AC4 7 THR A 125 HOH A 413 HOH A 425 SITE 1 AC5 4 PRO A 109 THR B 122 LYS B 127 LYS B 185 SITE 1 AC6 6 PRO A 90 GLU A 92 GLY A 94 GLN A 95 SITE 2 AC6 6 GLU A 96 HOH A 413 SITE 1 AC7 6 GLU A 87 TYR A 99 PHE A 100 LYS A 103 SITE 2 AC7 6 HOH A 405 LYS B 103 SITE 1 AC8 1 ARG A 187 SITE 1 AC9 1 LYS B 173 SITE 1 AD1 2 THR B 66 HIS B 67 SITE 1 AD2 5 LEU B 68 LYS B 159 ILE B 162 GLY B 163 SITE 2 AD2 5 ARG B 166 SITE 1 AD3 5 SER B 57 PRO B 58 GLY B 59 ILE B 60 SITE 2 AD3 5 LYS B 111 SITE 1 AD4 4 GLY B 94 SER B 123 THR B 124 THR B 125 SITE 1 AD5 6 LYS A 103 GLU B 87 TYR B 99 PHE B 100 SITE 2 AD5 6 LYS B 103 HOH B 404 SITE 1 AD6 1 GLY B 70 CRYST1 46.302 46.302 138.051 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007244 0.00000