data_6VKF # _entry.id 6VKF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6VKF WWPDB D_1000246504 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6VKF _pdbx_database_status.recvd_initial_deposition_date 2020-01-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mishra, A.K.' 1 ? 'McLellan, J.S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Virol. _citation.journal_id_ASTM JOVIAM _citation.journal_id_CSD 0825 _citation.journal_id_ISSN 1098-5514 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 94 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure and Characterization of Crimean-Congo Hemorrhagic Fever Virus GP38.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1128/JVI.02005-19 _citation.pdbx_database_id_PubMed 31996434 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mishra, A.K.' 1 ? primary 'Moyer, C.L.' 2 ? primary 'Abelson, D.M.' 3 ? primary 'Deer, D.J.' 4 ? primary 'El Omari, K.' 5 ? primary 'Duman, R.' 6 ? primary 'Lobel, L.' 7 ? primary 'Lutwama, J.J.' 8 ? primary 'Dye, J.M.' 9 ? primary 'Wagner, A.' 10 ? primary 'Chandran, K.' 11 ? primary 'Cross, R.W.' 12 ? primary 'Geisbert, T.W.' 13 ? primary 'Zeitlin, L.' 14 ? primary 'Bornholdt, Z.A.' 15 ? primary 'McLellan, J.S.' 16 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 103.870 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6VKF _cell.details ? _cell.formula_units_Z ? _cell.length_a 62.350 _cell.length_a_esd ? _cell.length_b 97.870 _cell.length_b_esd ? _cell.length_c 66.010 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6VKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man GP38 30241.828 2 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 3 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NLKMEIILTLSQGLKKYYGKILRLLQLTLEEDTEGLLEWCKRNLGLDCDDTFFQKRIEEFFITGEGHFNEVLQFRTPGTL STTESTPAGLPTAEPFKSYFAKGFLSIDSGYYSAKCYSGTSNSGLQLINITRHSTRIVDTPGPKITNLKTINCINLKASI FKEHREVEINVLLPQVAVNLSNCHVVIKSHVCDYSLDIDGAVRLPHIYHEGVFIPGTYKIVIDKKNKLNDRCTLFTDCVI KGREVRKGQSVLRQYKTEIRIGKASTGS ; _entity_poly.pdbx_seq_one_letter_code_can ;NLKMEIILTLSQGLKKYYGKILRLLQLTLEEDTEGLLEWCKRNLGLDCDDTFFQKRIEEFFITGEGHFNEVLQFRTPGTL STTESTPAGLPTAEPFKSYFAKGFLSIDSGYYSAKCYSGTSNSGLQLINITRHSTRIVDTPGPKITNLKTINCINLKASI FKEHREVEINVLLPQVAVNLSNCHVVIKSHVCDYSLDIDGAVRLPHIYHEGVFIPGTYKIVIDKKNKLNDRCTLFTDCVI KGREVRKGQSVLRQYKTEIRIGKASTGS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 LYS n 1 4 MET n 1 5 GLU n 1 6 ILE n 1 7 ILE n 1 8 LEU n 1 9 THR n 1 10 LEU n 1 11 SER n 1 12 GLN n 1 13 GLY n 1 14 LEU n 1 15 LYS n 1 16 LYS n 1 17 TYR n 1 18 TYR n 1 19 GLY n 1 20 LYS n 1 21 ILE n 1 22 LEU n 1 23 ARG n 1 24 LEU n 1 25 LEU n 1 26 GLN n 1 27 LEU n 1 28 THR n 1 29 LEU n 1 30 GLU n 1 31 GLU n 1 32 ASP n 1 33 THR n 1 34 GLU n 1 35 GLY n 1 36 LEU n 1 37 LEU n 1 38 GLU n 1 39 TRP n 1 40 CYS n 1 41 LYS n 1 42 ARG n 1 43 ASN n 1 44 LEU n 1 45 GLY n 1 46 LEU n 1 47 ASP n 1 48 CYS n 1 49 ASP n 1 50 ASP n 1 51 THR n 1 52 PHE n 1 53 PHE n 1 54 GLN n 1 55 LYS n 1 56 ARG n 1 57 ILE n 1 58 GLU n 1 59 GLU n 1 60 PHE n 1 61 PHE n 1 62 ILE n 1 63 THR n 1 64 GLY n 1 65 GLU n 1 66 GLY n 1 67 HIS n 1 68 PHE n 1 69 ASN n 1 70 GLU n 1 71 VAL n 1 72 LEU n 1 73 GLN n 1 74 PHE n 1 75 ARG n 1 76 THR n 1 77 PRO n 1 78 GLY n 1 79 THR n 1 80 LEU n 1 81 SER n 1 82 THR n 1 83 THR n 1 84 GLU n 1 85 SER n 1 86 THR n 1 87 PRO n 1 88 ALA n 1 89 GLY n 1 90 LEU n 1 91 PRO n 1 92 THR n 1 93 ALA n 1 94 GLU n 1 95 PRO n 1 96 PHE n 1 97 LYS n 1 98 SER n 1 99 TYR n 1 100 PHE n 1 101 ALA n 1 102 LYS n 1 103 GLY n 1 104 PHE n 1 105 LEU n 1 106 SER n 1 107 ILE n 1 108 ASP n 1 109 SER n 1 110 GLY n 1 111 TYR n 1 112 TYR n 1 113 SER n 1 114 ALA n 1 115 LYS n 1 116 CYS n 1 117 TYR n 1 118 SER n 1 119 GLY n 1 120 THR n 1 121 SER n 1 122 ASN n 1 123 SER n 1 124 GLY n 1 125 LEU n 1 126 GLN n 1 127 LEU n 1 128 ILE n 1 129 ASN n 1 130 ILE n 1 131 THR n 1 132 ARG n 1 133 HIS n 1 134 SER n 1 135 THR n 1 136 ARG n 1 137 ILE n 1 138 VAL n 1 139 ASP n 1 140 THR n 1 141 PRO n 1 142 GLY n 1 143 PRO n 1 144 LYS n 1 145 ILE n 1 146 THR n 1 147 ASN n 1 148 LEU n 1 149 LYS n 1 150 THR n 1 151 ILE n 1 152 ASN n 1 153 CYS n 1 154 ILE n 1 155 ASN n 1 156 LEU n 1 157 LYS n 1 158 ALA n 1 159 SER n 1 160 ILE n 1 161 PHE n 1 162 LYS n 1 163 GLU n 1 164 HIS n 1 165 ARG n 1 166 GLU n 1 167 VAL n 1 168 GLU n 1 169 ILE n 1 170 ASN n 1 171 VAL n 1 172 LEU n 1 173 LEU n 1 174 PRO n 1 175 GLN n 1 176 VAL n 1 177 ALA n 1 178 VAL n 1 179 ASN n 1 180 LEU n 1 181 SER n 1 182 ASN n 1 183 CYS n 1 184 HIS n 1 185 VAL n 1 186 VAL n 1 187 ILE n 1 188 LYS n 1 189 SER n 1 190 HIS n 1 191 VAL n 1 192 CYS n 1 193 ASP n 1 194 TYR n 1 195 SER n 1 196 LEU n 1 197 ASP n 1 198 ILE n 1 199 ASP n 1 200 GLY n 1 201 ALA n 1 202 VAL n 1 203 ARG n 1 204 LEU n 1 205 PRO n 1 206 HIS n 1 207 ILE n 1 208 TYR n 1 209 HIS n 1 210 GLU n 1 211 GLY n 1 212 VAL n 1 213 PHE n 1 214 ILE n 1 215 PRO n 1 216 GLY n 1 217 THR n 1 218 TYR n 1 219 LYS n 1 220 ILE n 1 221 VAL n 1 222 ILE n 1 223 ASP n 1 224 LYS n 1 225 LYS n 1 226 ASN n 1 227 LYS n 1 228 LEU n 1 229 ASN n 1 230 ASP n 1 231 ARG n 1 232 CYS n 1 233 THR n 1 234 LEU n 1 235 PHE n 1 236 THR n 1 237 ASP n 1 238 CYS n 1 239 VAL n 1 240 ILE n 1 241 LYS n 1 242 GLY n 1 243 ARG n 1 244 GLU n 1 245 VAL n 1 246 ARG n 1 247 LYS n 1 248 GLY n 1 249 GLN n 1 250 SER n 1 251 VAL n 1 252 LEU n 1 253 ARG n 1 254 GLN n 1 255 TYR n 1 256 LYS n 1 257 THR n 1 258 GLU n 1 259 ILE n 1 260 ARG n 1 261 ILE n 1 262 GLY n 1 263 LYS n 1 264 ALA n 1 265 SER n 1 266 THR n 1 267 GLY n 1 268 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 268 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Crimean-Congo hemorrhagic fever orthonairovirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1980519 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name Human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A1V0G0G3_9VIRU _struct_ref.pdbx_db_accession A0A1V0G0G3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NLKMEIILTLSQGLKKYYGKILRLLQLTLEEDTEGLLEWCKRNLGLDCDDTFFQKRIEEFFITGEGHFNEVLQFRTPGTL STTESTPAGLPTAEPFKSYFAKGFLSIDSGYYSAKCYSGTSNSGLQLINITRHSTRIVDTPGPKITNLKTINCINLKASI FKEHREVEINVLLPQVAVNLSNCHVVIKSHVCDYSLDIDGAVRLPHIYHEGVFIPGTYKIVIDKKNKLNDRCTLFTDCVI KGREVRKGQSVLRQYKTEIRIGKASTGS ; _struct_ref.pdbx_align_begin 248 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6VKF A 1 ? 268 ? A0A1V0G0G3 248 ? 515 ? 248 515 2 1 6VKF B 1 ? 268 ? A0A1V0G0G3 248 ? 515 ? 248 515 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6VKF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Sodium acetate pH 5.5, PEG 400, PEG 3350' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.ambient_environment _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.ambient_temp_esd _diffrn.crystal_id _diffrn.crystal_support _diffrn.crystal_treatment _diffrn.details _diffrn.id _diffrn.ambient_pressure _diffrn.ambient_pressure_esd _diffrn.ambient_pressure_gt _diffrn.ambient_pressure_lt _diffrn.ambient_temp_gt _diffrn.ambient_temp_lt _diffrn.pdbx_serial_crystal_experiment ? 100 ? ? 1 ? ? ? 1 ? ? ? ? ? ? N ? 100 ? ? 1 ? ? ? 2 ? ? ? ? ? ? N # loop_ _diffrn_detector.details _diffrn_detector.detector _diffrn_detector.diffrn_id _diffrn_detector.type _diffrn_detector.area_resol_mean _diffrn_detector.dtime _diffrn_detector.pdbx_frames_total _diffrn_detector.pdbx_collection_time_total _diffrn_detector.pdbx_collection_date _diffrn_detector.pdbx_frequency ? CCD 1 'ADSC QUANTUM 315' ? ? ? ? 2018-11-09 ? ? PIXEL 2 'DECTRIS PILATUS 12M' ? ? ? ? 2019-02-06 ? # loop_ _diffrn_radiation.collimation _diffrn_radiation.diffrn_id _diffrn_radiation.filter_edge _diffrn_radiation.inhomogeneity _diffrn_radiation.monochromator _diffrn_radiation.polarisn_norm _diffrn_radiation.polarisn_ratio _diffrn_radiation.probe _diffrn_radiation.type _diffrn_radiation.xray_symbol _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_wavelength_list _diffrn_radiation.pdbx_wavelength _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_analyzer _diffrn_radiation.pdbx_scattering_type ? 1 ? ? ? ? ? ? ? ? 1 M ? ? 'SINGLE WAVELENGTH' ? x-ray ? 2 ? ? ? ? ? ? ? ? 2 M ? ? 'SINGLE WAVELENGTH' ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979 1.0 2 2.7551 1.0 # loop_ _diffrn_source.current _diffrn_source.details _diffrn_source.diffrn_id _diffrn_source.power _diffrn_source.size _diffrn_source.source _diffrn_source.target _diffrn_source.type _diffrn_source.voltage _diffrn_source.take-off_angle _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_synchrotron_site ? ? 1 ? ? SYNCHROTRON ? 'APS BEAMLINE 19-ID' ? ? 0.979 ? 19-ID APS ? ? 2 ? ? SYNCHROTRON ? 'DIAMOND BEAMLINE I23' ? ? 2.7551 ? I23 Diamond # loop_ _reflns.B_iso_Wilson_estimate _reflns.entry_id _reflns.data_reduction_details _reflns.data_reduction_method _reflns.d_resolution_high _reflns.d_resolution_low _reflns.details _reflns.limit_h_max _reflns.limit_h_min _reflns.limit_k_max _reflns.limit_k_min _reflns.limit_l_max _reflns.limit_l_min _reflns.number_all _reflns.number_obs _reflns.observed_criterion _reflns.observed_criterion_F_max _reflns.observed_criterion_F_min _reflns.observed_criterion_I_max _reflns.observed_criterion_I_min _reflns.observed_criterion_sigma_F _reflns.observed_criterion_sigma_I _reflns.percent_possible_obs _reflns.R_free_details _reflns.Rmerge_F_all _reflns.Rmerge_F_obs _reflns.Friedel_coverage _reflns.number_gt _reflns.threshold_expression _reflns.pdbx_redundancy _reflns.pdbx_Rmerge_I_obs _reflns.pdbx_Rmerge_I_all _reflns.pdbx_Rsym_value _reflns.pdbx_netI_over_av_sigmaI _reflns.pdbx_netI_over_sigmaI _reflns.pdbx_res_netI_over_av_sigmaI_2 _reflns.pdbx_res_netI_over_sigmaI_2 _reflns.pdbx_chi_squared _reflns.pdbx_scaling_rejects _reflns.pdbx_d_res_high_opt _reflns.pdbx_d_res_low_opt _reflns.pdbx_d_res_opt_method _reflns.phase_calculation_details _reflns.pdbx_Rrim_I_all _reflns.pdbx_Rpim_I_all _reflns.pdbx_d_opt _reflns.pdbx_number_measured_all _reflns.pdbx_diffrn_id _reflns.pdbx_ordinal _reflns.pdbx_CC_half _reflns.pdbx_CC_star _reflns.pdbx_R_split ? 6VKF ? ? 2.52 51.4810 ? ? ? ? ? ? ? ? 25110 ? ? ? ? ? ? ? 97 ? ? ? ? ? ? 3.2 ? ? ? ? 12.6 ? ? ? ? ? ? ? ? ? ? ? ? 1 1 0.998 ? ? ? 6VKF ? ? 2.79 64.85 ? ? ? ? ? ? ? ? 38302 ? ? ? ? ? ? ? 95.4 ? ? ? ? ? ? 15 ? ? ? ? 12 ? ? ? ? ? ? ? ? ? ? ? ? 2 2 0.999 ? ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.52 2.63 ? 2.5 ? ? ? ? 2868 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 1 0.815 ? ? 2.79 2.94 ? 1.5 ? ? ? ? 2584 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 2 0.733 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 207.440 _refine.B_iso_mean 92.7340 _refine.B_iso_min 47.500 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6VKF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.5240 _refine.ls_d_res_low 51.4810 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25070 _refine.ls_number_reflns_R_free 1206 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.6300 _refine.ls_percent_reflns_R_free 4.8100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2243 _refine.ls_R_factor_R_free 0.2558 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2227 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.1000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.5240 _refine_hist.d_res_low 51.4810 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 3901 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 472 _refine_hist.pdbx_B_iso_mean_ligand 136.23 _refine_hist.pdbx_B_iso_mean_solvent 68.43 _refine_hist.pdbx_number_atoms_protein 3793 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 98 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.5240 2.6251 . . 138 2659 98.0000 . . . 0.3682 0.0000 0.3177 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6251 2.7446 . . 135 2657 97.0000 . . . 0.3420 0.0000 0.2903 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7446 2.8892 . . 124 2572 95.0000 . . . 0.3153 0.0000 0.2823 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8892 3.0702 . . 99 2692 97.0000 . . . 0.3181 0.0000 0.3065 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0702 3.3073 . . 124 2711 98.0000 . . . 0.3204 0.0000 0.2654 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3073 3.6400 . . 138 2582 95.0000 . . . 0.2937 0.0000 0.2447 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6400 4.1665 . . 151 2682 98.0000 . . . 0.2546 0.0000 0.2231 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1665 5.2485 . . 151 2612 96.0000 . . . 0.2056 0.0000 0.1757 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.2485 51.4810 . . 146 2697 97.0000 . . . 0.2309 0.0000 0.2001 . . . . . . . . . . . # _struct.entry_id 6VKF _struct.title 'CCHFV GP38 (IbAr10200)' _struct.pdbx_descriptor GP38 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6VKF _struct_keywords.text 'secretory, viral, glycoprotein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 9 ? LEU A 25 ? THR A 256 LEU A 272 1 ? 17 HELX_P HELX_P2 AA2 GLY A 35 ? GLY A 45 ? GLY A 282 GLY A 292 1 ? 11 HELX_P HELX_P3 AA3 ASP A 49 ? ILE A 62 ? ASP A 296 ILE A 309 1 ? 14 HELX_P HELX_P4 AA4 GLY A 119 ? ASN A 122 ? GLY A 366 ASN A 369 5 ? 4 HELX_P HELX_P5 AA5 ASN A 147 ? ILE A 151 ? ASN A 394 ILE A 398 5 ? 5 HELX_P HELX_P6 AA6 ASN A 226 ? ASP A 230 ? ASN A 473 ASP A 477 5 ? 5 HELX_P HELX_P7 AA7 THR B 9 ? LEU B 25 ? THR B 256 LEU B 272 1 ? 17 HELX_P HELX_P8 AA8 GLY B 35 ? GLY B 45 ? GLY B 282 GLY B 292 1 ? 11 HELX_P HELX_P9 AA9 ASP B 49 ? ILE B 62 ? ASP B 296 ILE B 309 1 ? 14 HELX_P HELX_P10 AB1 ASN B 147 ? ILE B 151 ? ASN B 394 ILE B 398 5 ? 5 HELX_P HELX_P11 AB2 LYS B 162 ? HIS B 164 ? LYS B 409 HIS B 411 5 ? 3 HELX_P HELX_P12 AB3 LYS B 227 ? ARG B 231 ? LYS B 474 ARG B 478 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 116 SG ? ? ? 1_555 A CYS 192 SG ? ? A CYS 363 A CYS 439 1_555 ? ? ? ? ? ? ? 2.065 ? ? disulf2 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 238 SG ? ? A CYS 400 A CYS 485 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf3 disulf ? ? A CYS 183 SG ? ? ? 1_555 A CYS 232 SG ? ? A CYS 430 A CYS 479 1_555 ? ? ? ? ? ? ? 2.074 ? ? disulf4 disulf ? ? B CYS 40 SG ? ? ? 1_555 B CYS 48 SG ? ? B CYS 287 B CYS 295 1_555 ? ? ? ? ? ? ? 1.823 ? ? disulf5 disulf ? ? B CYS 116 SG ? ? ? 1_555 B CYS 192 SG ? ? B CYS 363 B CYS 439 1_555 ? ? ? ? ? ? ? 2.100 ? ? disulf6 disulf ? ? B CYS 153 SG ? ? ? 1_555 B CYS 238 SG ? ? B CYS 400 B CYS 485 1_555 ? ? ? ? ? ? ? 2.072 ? ? disulf7 disulf ? ? B CYS 183 SG ? ? ? 1_555 B CYS 232 SG ? ? B CYS 430 B CYS 479 1_555 ? ? ? ? ? ? ? 2.043 ? ? covale1 covale one ? A ASN 129 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 376 D NAG 1 1_555 ? ? ? ? ? ? ? 1.435 ? N-Glycosylation covale2 covale one ? A ASN 179 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 426 C NAG 1 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale3 covale one ? B ASN 129 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 376 E NAG 1 1_555 ? ? ? ? ? ? ? 1.479 ? N-Glycosylation covale4 covale one ? B ASN 179 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 426 B NAG 603 1_555 ? ? ? ? ? ? ? 1.465 ? N-Glycosylation covale5 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale6 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale7 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.454 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 7 ? AA3 ? 3 ? AA4 ? 5 ? AA5 ? 4 ? AA6 ? 2 ? AA7 ? 7 ? AA8 ? 3 ? AA9 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA7 5 6 ? anti-parallel AA7 6 7 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 68 ? ASN A 69 ? PHE A 315 ASN A 316 AA1 2 TYR A 99 ? PHE A 100 ? TYR A 346 PHE A 347 AA2 1 PHE A 104 ? ASP A 108 ? PHE A 351 ASP A 355 AA2 2 SER A 113 ? TYR A 117 ? SER A 360 TYR A 364 AA2 3 CYS A 192 ? LEU A 196 ? CYS A 439 LEU A 443 AA2 4 VAL A 185 ? LYS A 188 ? VAL A 432 LYS A 435 AA2 5 TYR A 218 ? ASP A 223 ? TYR A 465 ASP A 470 AA2 6 GLU A 166 ? VAL A 171 ? GLU A 413 VAL A 418 AA2 7 LEU A 156 ? PHE A 161 ? LEU A 403 PHE A 408 AA3 1 LEU A 127 ? ASN A 129 ? LEU A 374 ASN A 376 AA3 2 VAL A 212 ? PRO A 215 ? VAL A 459 PRO A 462 AA3 3 ILE A 207 ? TYR A 208 ? ILE A 454 TYR A 455 AA4 1 VAL A 138 ? ASP A 139 ? VAL A 385 ASP A 386 AA4 2 SER A 250 ? ARG A 260 ? SER A 497 ARG A 507 AA4 3 THR A 233 ? GLU A 244 ? THR A 480 GLU A 491 AA4 4 VAL A 178 ? SER A 181 ? VAL A 425 SER A 428 AA4 5 GLY A 200 ? ALA A 201 ? GLY A 447 ALA A 448 AA5 1 ILE A 145 ? THR A 146 ? ILE A 392 THR A 393 AA5 2 SER A 250 ? ARG A 260 ? SER A 497 ARG A 507 AA5 3 THR A 233 ? GLU A 244 ? THR A 480 GLU A 491 AA5 4 MET B 4 ? ILE B 6 ? MET B 251 ILE B 253 AA6 1 HIS B 67 ? PHE B 68 ? HIS B 314 PHE B 315 AA6 2 PHE B 74 ? ARG B 75 ? PHE B 321 ARG B 322 AA7 1 PHE B 104 ? ASP B 108 ? PHE B 351 ASP B 355 AA7 2 SER B 113 ? TYR B 117 ? SER B 360 TYR B 364 AA7 3 CYS B 192 ? LEU B 196 ? CYS B 439 LEU B 443 AA7 4 VAL B 185 ? LYS B 188 ? VAL B 432 LYS B 435 AA7 5 TYR B 218 ? ASP B 223 ? TYR B 465 ASP B 470 AA7 6 GLU B 166 ? VAL B 171 ? GLU B 413 VAL B 418 AA7 7 LEU B 156 ? PHE B 161 ? LEU B 403 PHE B 408 AA8 1 LEU B 127 ? ASN B 129 ? LEU B 374 ASN B 376 AA8 2 VAL B 212 ? PRO B 215 ? VAL B 459 PRO B 462 AA8 3 ILE B 207 ? TYR B 208 ? ILE B 454 TYR B 455 AA9 1 ILE B 145 ? THR B 146 ? ILE B 392 THR B 393 AA9 2 TYR B 255 ? ARG B 260 ? TYR B 502 ARG B 507 AA9 3 THR B 233 ? CYS B 238 ? THR B 480 CYS B 485 AA9 4 VAL B 178 ? SER B 181 ? VAL B 425 SER B 428 AA9 5 GLY B 200 ? ALA B 201 ? GLY B 447 ALA B 448 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 68 ? N PHE A 315 O PHE A 100 ? O PHE A 347 AA2 1 2 N LEU A 105 ? N LEU A 352 O CYS A 116 ? O CYS A 363 AA2 2 3 N LYS A 115 ? N LYS A 362 O ASP A 193 ? O ASP A 440 AA2 3 4 O TYR A 194 ? O TYR A 441 N ILE A 187 ? N ILE A 434 AA2 4 5 N LYS A 188 ? N LYS A 435 O LYS A 219 ? O LYS A 466 AA2 5 6 O TYR A 218 ? O TYR A 465 N VAL A 171 ? N VAL A 418 AA2 6 7 O ASN A 170 ? O ASN A 417 N LYS A 157 ? N LYS A 404 AA3 1 2 N ILE A 128 ? N ILE A 375 O ILE A 214 ? O ILE A 461 AA3 2 3 O PHE A 213 ? O PHE A 460 N ILE A 207 ? N ILE A 454 AA4 1 2 N VAL A 138 ? N VAL A 385 O GLN A 254 ? O GLN A 501 AA4 2 3 O ILE A 259 ? O ILE A 506 N LEU A 234 ? N LEU A 481 AA4 3 4 O PHE A 235 ? O PHE A 482 N ASN A 179 ? N ASN A 426 AA4 4 5 N LEU A 180 ? N LEU A 427 O GLY A 200 ? O GLY A 447 AA5 1 2 N THR A 146 ? N THR A 393 O GLU A 258 ? O GLU A 505 AA5 2 3 O ILE A 259 ? O ILE A 506 N LEU A 234 ? N LEU A 481 AA5 3 4 N ARG A 243 ? N ARG A 490 O GLU B 5 ? O GLU B 252 AA6 1 2 N HIS B 67 ? N HIS B 314 O ARG B 75 ? O ARG B 322 AA7 1 2 N LEU B 105 ? N LEU B 352 O CYS B 116 ? O CYS B 363 AA7 2 3 N LYS B 115 ? N LYS B 362 O ASP B 193 ? O ASP B 440 AA7 3 4 O TYR B 194 ? O TYR B 441 N ILE B 187 ? N ILE B 434 AA7 4 5 N VAL B 186 ? N VAL B 433 O VAL B 221 ? O VAL B 468 AA7 5 6 O ILE B 220 ? O ILE B 467 N ILE B 169 ? N ILE B 416 AA7 6 7 O ASN B 170 ? O ASN B 417 N LYS B 157 ? N LYS B 404 AA8 1 2 N ILE B 128 ? N ILE B 375 O ILE B 214 ? O ILE B 461 AA8 2 3 O PHE B 213 ? O PHE B 460 N ILE B 207 ? N ILE B 454 AA9 1 2 N THR B 146 ? N THR B 393 O GLU B 258 ? O GLU B 505 AA9 2 3 O ILE B 259 ? O ILE B 506 N LEU B 234 ? N LEU B 481 AA9 3 4 O PHE B 235 ? O PHE B 482 N ASN B 179 ? N ASN B 426 AA9 4 5 N LEU B 180 ? N LEU B 427 O GLY B 200 ? O GLY B 447 # _atom_sites.entry_id 6VKF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.016039 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003960 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010218 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015604 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 248 ? ? ? A . n A 1 2 LEU 2 249 ? ? ? A . n A 1 3 LYS 3 250 ? ? ? A . n A 1 4 MET 4 251 ? ? ? A . n A 1 5 GLU 5 252 252 GLU GLU A . n A 1 6 ILE 6 253 253 ILE ILE A . n A 1 7 ILE 7 254 254 ILE ILE A . n A 1 8 LEU 8 255 255 LEU LEU A . n A 1 9 THR 9 256 256 THR THR A . n A 1 10 LEU 10 257 257 LEU LEU A . n A 1 11 SER 11 258 258 SER SER A . n A 1 12 GLN 12 259 259 GLN GLN A . n A 1 13 GLY 13 260 260 GLY GLY A . n A 1 14 LEU 14 261 261 LEU LEU A . n A 1 15 LYS 15 262 262 LYS LYS A . n A 1 16 LYS 16 263 263 LYS LYS A . n A 1 17 TYR 17 264 264 TYR TYR A . n A 1 18 TYR 18 265 265 TYR TYR A . n A 1 19 GLY 19 266 266 GLY GLY A . n A 1 20 LYS 20 267 267 LYS LYS A . n A 1 21 ILE 21 268 268 ILE ILE A . n A 1 22 LEU 22 269 269 LEU LEU A . n A 1 23 ARG 23 270 270 ARG ARG A . n A 1 24 LEU 24 271 271 LEU LEU A . n A 1 25 LEU 25 272 272 LEU LEU A . n A 1 26 GLN 26 273 273 GLN GLN A . n A 1 27 LEU 27 274 274 LEU LEU A . n A 1 28 THR 28 275 275 THR THR A . n A 1 29 LEU 29 276 276 LEU LEU A . n A 1 30 GLU 30 277 277 GLU GLU A . n A 1 31 GLU 31 278 278 GLU GLU A . n A 1 32 ASP 32 279 279 ASP ASP A . n A 1 33 THR 33 280 280 THR THR A . n A 1 34 GLU 34 281 281 GLU GLU A . n A 1 35 GLY 35 282 282 GLY GLY A . n A 1 36 LEU 36 283 283 LEU LEU A . n A 1 37 LEU 37 284 284 LEU LEU A . n A 1 38 GLU 38 285 285 GLU GLU A . n A 1 39 TRP 39 286 286 TRP TRP A . n A 1 40 CYS 40 287 287 CYS CYS A . n A 1 41 LYS 41 288 288 LYS LYS A . n A 1 42 ARG 42 289 289 ARG ARG A . n A 1 43 ASN 43 290 290 ASN ASN A . n A 1 44 LEU 44 291 291 LEU LEU A . n A 1 45 GLY 45 292 292 GLY GLY A . n A 1 46 LEU 46 293 293 LEU LEU A . n A 1 47 ASP 47 294 294 ASP ASP A . n A 1 48 CYS 48 295 295 CYS CYS A . n A 1 49 ASP 49 296 296 ASP ASP A . n A 1 50 ASP 50 297 297 ASP ASP A . n A 1 51 THR 51 298 298 THR THR A . n A 1 52 PHE 52 299 299 PHE PHE A . n A 1 53 PHE 53 300 300 PHE PHE A . n A 1 54 GLN 54 301 301 GLN GLN A . n A 1 55 LYS 55 302 302 LYS LYS A . n A 1 56 ARG 56 303 303 ARG ARG A . n A 1 57 ILE 57 304 304 ILE ILE A . n A 1 58 GLU 58 305 305 GLU GLU A . n A 1 59 GLU 59 306 306 GLU GLU A . n A 1 60 PHE 60 307 307 PHE PHE A . n A 1 61 PHE 61 308 308 PHE PHE A . n A 1 62 ILE 62 309 309 ILE ILE A . n A 1 63 THR 63 310 310 THR THR A . n A 1 64 GLY 64 311 311 GLY GLY A . n A 1 65 GLU 65 312 312 GLU GLU A . n A 1 66 GLY 66 313 313 GLY GLY A . n A 1 67 HIS 67 314 314 HIS HIS A . n A 1 68 PHE 68 315 315 PHE PHE A . n A 1 69 ASN 69 316 316 ASN ASN A . n A 1 70 GLU 70 317 317 GLU GLU A . n A 1 71 VAL 71 318 318 VAL VAL A . n A 1 72 LEU 72 319 319 LEU LEU A . n A 1 73 GLN 73 320 320 GLN GLN A . n A 1 74 PHE 74 321 321 PHE PHE A . n A 1 75 ARG 75 322 322 ARG ARG A . n A 1 76 THR 76 323 ? ? ? A . n A 1 77 PRO 77 324 ? ? ? A . n A 1 78 GLY 78 325 ? ? ? A . n A 1 79 THR 79 326 ? ? ? A . n A 1 80 LEU 80 327 ? ? ? A . n A 1 81 SER 81 328 ? ? ? A . n A 1 82 THR 82 329 ? ? ? A . n A 1 83 THR 83 330 ? ? ? A . n A 1 84 GLU 84 331 ? ? ? A . n A 1 85 SER 85 332 ? ? ? A . n A 1 86 THR 86 333 ? ? ? A . n A 1 87 PRO 87 334 ? ? ? A . n A 1 88 ALA 88 335 ? ? ? A . n A 1 89 GLY 89 336 ? ? ? A . n A 1 90 LEU 90 337 ? ? ? A . n A 1 91 PRO 91 338 ? ? ? A . n A 1 92 THR 92 339 ? ? ? A . n A 1 93 ALA 93 340 ? ? ? A . n A 1 94 GLU 94 341 341 GLU GLU A . n A 1 95 PRO 95 342 342 PRO PRO A . n A 1 96 PHE 96 343 343 PHE PHE A . n A 1 97 LYS 97 344 344 LYS LYS A . n A 1 98 SER 98 345 345 SER SER A . n A 1 99 TYR 99 346 346 TYR TYR A . n A 1 100 PHE 100 347 347 PHE PHE A . n A 1 101 ALA 101 348 348 ALA ALA A . n A 1 102 LYS 102 349 349 LYS LYS A . n A 1 103 GLY 103 350 350 GLY GLY A . n A 1 104 PHE 104 351 351 PHE PHE A . n A 1 105 LEU 105 352 352 LEU LEU A . n A 1 106 SER 106 353 353 SER SER A . n A 1 107 ILE 107 354 354 ILE ILE A . n A 1 108 ASP 108 355 355 ASP ASP A . n A 1 109 SER 109 356 356 SER SER A . n A 1 110 GLY 110 357 357 GLY GLY A . n A 1 111 TYR 111 358 358 TYR TYR A . n A 1 112 TYR 112 359 359 TYR TYR A . n A 1 113 SER 113 360 360 SER SER A . n A 1 114 ALA 114 361 361 ALA ALA A . n A 1 115 LYS 115 362 362 LYS LYS A . n A 1 116 CYS 116 363 363 CYS CYS A . n A 1 117 TYR 117 364 364 TYR TYR A . n A 1 118 SER 118 365 365 SER SER A . n A 1 119 GLY 119 366 366 GLY GLY A . n A 1 120 THR 120 367 367 THR THR A . n A 1 121 SER 121 368 368 SER SER A . n A 1 122 ASN 122 369 369 ASN ASN A . n A 1 123 SER 123 370 370 SER SER A . n A 1 124 GLY 124 371 371 GLY GLY A . n A 1 125 LEU 125 372 372 LEU LEU A . n A 1 126 GLN 126 373 373 GLN GLN A . n A 1 127 LEU 127 374 374 LEU LEU A . n A 1 128 ILE 128 375 375 ILE ILE A . n A 1 129 ASN 129 376 376 ASN ASN A . n A 1 130 ILE 130 377 377 ILE ILE A . n A 1 131 THR 131 378 378 THR THR A . n A 1 132 ARG 132 379 379 ARG ARG A . n A 1 133 HIS 133 380 380 HIS HIS A . n A 1 134 SER 134 381 381 SER SER A . n A 1 135 THR 135 382 382 THR THR A . n A 1 136 ARG 136 383 383 ARG ARG A . n A 1 137 ILE 137 384 384 ILE ILE A . n A 1 138 VAL 138 385 385 VAL VAL A . n A 1 139 ASP 139 386 386 ASP ASP A . n A 1 140 THR 140 387 387 THR THR A . n A 1 141 PRO 141 388 388 PRO PRO A . n A 1 142 GLY 142 389 389 GLY GLY A . n A 1 143 PRO 143 390 390 PRO PRO A . n A 1 144 LYS 144 391 391 LYS LYS A . n A 1 145 ILE 145 392 392 ILE ILE A . n A 1 146 THR 146 393 393 THR THR A . n A 1 147 ASN 147 394 394 ASN ASN A . n A 1 148 LEU 148 395 395 LEU LEU A . n A 1 149 LYS 149 396 396 LYS LYS A . n A 1 150 THR 150 397 397 THR THR A . n A 1 151 ILE 151 398 398 ILE ILE A . n A 1 152 ASN 152 399 399 ASN ASN A . n A 1 153 CYS 153 400 400 CYS CYS A . n A 1 154 ILE 154 401 401 ILE ILE A . n A 1 155 ASN 155 402 402 ASN ASN A . n A 1 156 LEU 156 403 403 LEU LEU A . n A 1 157 LYS 157 404 404 LYS LYS A . n A 1 158 ALA 158 405 405 ALA ALA A . n A 1 159 SER 159 406 406 SER SER A . n A 1 160 ILE 160 407 407 ILE ILE A . n A 1 161 PHE 161 408 408 PHE PHE A . n A 1 162 LYS 162 409 409 LYS LYS A . n A 1 163 GLU 163 410 410 GLU GLU A . n A 1 164 HIS 164 411 411 HIS HIS A . n A 1 165 ARG 165 412 412 ARG ARG A . n A 1 166 GLU 166 413 413 GLU GLU A . n A 1 167 VAL 167 414 414 VAL VAL A . n A 1 168 GLU 168 415 415 GLU GLU A . n A 1 169 ILE 169 416 416 ILE ILE A . n A 1 170 ASN 170 417 417 ASN ASN A . n A 1 171 VAL 171 418 418 VAL VAL A . n A 1 172 LEU 172 419 419 LEU LEU A . n A 1 173 LEU 173 420 420 LEU LEU A . n A 1 174 PRO 174 421 421 PRO PRO A . n A 1 175 GLN 175 422 422 GLN GLN A . n A 1 176 VAL 176 423 423 VAL VAL A . n A 1 177 ALA 177 424 424 ALA ALA A . n A 1 178 VAL 178 425 425 VAL VAL A . n A 1 179 ASN 179 426 426 ASN ASN A . n A 1 180 LEU 180 427 427 LEU LEU A . n A 1 181 SER 181 428 428 SER SER A . n A 1 182 ASN 182 429 429 ASN ASN A . n A 1 183 CYS 183 430 430 CYS CYS A . n A 1 184 HIS 184 431 431 HIS HIS A . n A 1 185 VAL 185 432 432 VAL VAL A . n A 1 186 VAL 186 433 433 VAL VAL A . n A 1 187 ILE 187 434 434 ILE ILE A . n A 1 188 LYS 188 435 435 LYS LYS A . n A 1 189 SER 189 436 436 SER SER A . n A 1 190 HIS 190 437 437 HIS HIS A . n A 1 191 VAL 191 438 438 VAL VAL A . n A 1 192 CYS 192 439 439 CYS CYS A . n A 1 193 ASP 193 440 440 ASP ASP A . n A 1 194 TYR 194 441 441 TYR TYR A . n A 1 195 SER 195 442 442 SER SER A . n A 1 196 LEU 196 443 443 LEU LEU A . n A 1 197 ASP 197 444 444 ASP ASP A . n A 1 198 ILE 198 445 445 ILE ILE A . n A 1 199 ASP 199 446 446 ASP ASP A . n A 1 200 GLY 200 447 447 GLY GLY A . n A 1 201 ALA 201 448 448 ALA ALA A . n A 1 202 VAL 202 449 449 VAL VAL A . n A 1 203 ARG 203 450 450 ARG ARG A . n A 1 204 LEU 204 451 451 LEU LEU A . n A 1 205 PRO 205 452 452 PRO PRO A . n A 1 206 HIS 206 453 453 HIS HIS A . n A 1 207 ILE 207 454 454 ILE ILE A . n A 1 208 TYR 208 455 455 TYR TYR A . n A 1 209 HIS 209 456 456 HIS HIS A . n A 1 210 GLU 210 457 457 GLU GLU A . n A 1 211 GLY 211 458 458 GLY GLY A . n A 1 212 VAL 212 459 459 VAL VAL A . n A 1 213 PHE 213 460 460 PHE PHE A . n A 1 214 ILE 214 461 461 ILE ILE A . n A 1 215 PRO 215 462 462 PRO PRO A . n A 1 216 GLY 216 463 463 GLY GLY A . n A 1 217 THR 217 464 464 THR THR A . n A 1 218 TYR 218 465 465 TYR TYR A . n A 1 219 LYS 219 466 466 LYS LYS A . n A 1 220 ILE 220 467 467 ILE ILE A . n A 1 221 VAL 221 468 468 VAL VAL A . n A 1 222 ILE 222 469 469 ILE ILE A . n A 1 223 ASP 223 470 470 ASP ASP A . n A 1 224 LYS 224 471 471 LYS LYS A . n A 1 225 LYS 225 472 472 LYS LYS A . n A 1 226 ASN 226 473 473 ASN ASN A . n A 1 227 LYS 227 474 474 LYS LYS A . n A 1 228 LEU 228 475 475 LEU LEU A . n A 1 229 ASN 229 476 476 ASN ASN A . n A 1 230 ASP 230 477 477 ASP ASP A . n A 1 231 ARG 231 478 478 ARG ARG A . n A 1 232 CYS 232 479 479 CYS CYS A . n A 1 233 THR 233 480 480 THR THR A . n A 1 234 LEU 234 481 481 LEU LEU A . n A 1 235 PHE 235 482 482 PHE PHE A . n A 1 236 THR 236 483 483 THR THR A . n A 1 237 ASP 237 484 484 ASP ASP A . n A 1 238 CYS 238 485 485 CYS CYS A . n A 1 239 VAL 239 486 486 VAL VAL A . n A 1 240 ILE 240 487 487 ILE ILE A . n A 1 241 LYS 241 488 488 LYS LYS A . n A 1 242 GLY 242 489 489 GLY GLY A . n A 1 243 ARG 243 490 490 ARG ARG A . n A 1 244 GLU 244 491 491 GLU GLU A . n A 1 245 VAL 245 492 492 VAL VAL A . n A 1 246 ARG 246 493 493 ARG ARG A . n A 1 247 LYS 247 494 494 LYS LYS A . n A 1 248 GLY 248 495 495 GLY GLY A . n A 1 249 GLN 249 496 496 GLN GLN A . n A 1 250 SER 250 497 497 SER SER A . n A 1 251 VAL 251 498 498 VAL VAL A . n A 1 252 LEU 252 499 499 LEU LEU A . n A 1 253 ARG 253 500 500 ARG ARG A . n A 1 254 GLN 254 501 501 GLN GLN A . n A 1 255 TYR 255 502 502 TYR TYR A . n A 1 256 LYS 256 503 503 LYS LYS A . n A 1 257 THR 257 504 504 THR THR A . n A 1 258 GLU 258 505 505 GLU GLU A . n A 1 259 ILE 259 506 506 ILE ILE A . n A 1 260 ARG 260 507 507 ARG ARG A . n A 1 261 ILE 261 508 508 ILE ILE A . n A 1 262 GLY 262 509 509 GLY GLY A . n A 1 263 LYS 263 510 ? ? ? A . n A 1 264 ALA 264 511 ? ? ? A . n A 1 265 SER 265 512 ? ? ? A . n A 1 266 THR 266 513 ? ? ? A . n A 1 267 GLY 267 514 ? ? ? A . n A 1 268 SER 268 515 ? ? ? A . n B 1 1 ASN 1 248 ? ? ? B . n B 1 2 LEU 2 249 ? ? ? B . n B 1 3 LYS 3 250 250 LYS LYS B . n B 1 4 MET 4 251 251 MET MET B . n B 1 5 GLU 5 252 252 GLU GLU B . n B 1 6 ILE 6 253 253 ILE ILE B . n B 1 7 ILE 7 254 254 ILE ILE B . n B 1 8 LEU 8 255 255 LEU LEU B . n B 1 9 THR 9 256 256 THR THR B . n B 1 10 LEU 10 257 257 LEU LEU B . n B 1 11 SER 11 258 258 SER SER B . n B 1 12 GLN 12 259 259 GLN GLN B . n B 1 13 GLY 13 260 260 GLY GLY B . n B 1 14 LEU 14 261 261 LEU LEU B . n B 1 15 LYS 15 262 262 LYS LYS B . n B 1 16 LYS 16 263 263 LYS LYS B . n B 1 17 TYR 17 264 264 TYR TYR B . n B 1 18 TYR 18 265 265 TYR TYR B . n B 1 19 GLY 19 266 266 GLY GLY B . n B 1 20 LYS 20 267 267 LYS LYS B . n B 1 21 ILE 21 268 268 ILE ILE B . n B 1 22 LEU 22 269 269 LEU LEU B . n B 1 23 ARG 23 270 270 ARG ARG B . n B 1 24 LEU 24 271 271 LEU LEU B . n B 1 25 LEU 25 272 272 LEU LEU B . n B 1 26 GLN 26 273 273 GLN GLN B . n B 1 27 LEU 27 274 274 LEU LEU B . n B 1 28 THR 28 275 275 THR THR B . n B 1 29 LEU 29 276 276 LEU LEU B . n B 1 30 GLU 30 277 277 GLU GLU B . n B 1 31 GLU 31 278 278 GLU GLU B . n B 1 32 ASP 32 279 279 ASP ASP B . n B 1 33 THR 33 280 280 THR THR B . n B 1 34 GLU 34 281 281 GLU GLU B . n B 1 35 GLY 35 282 282 GLY GLY B . n B 1 36 LEU 36 283 283 LEU LEU B . n B 1 37 LEU 37 284 284 LEU LEU B . n B 1 38 GLU 38 285 285 GLU GLU B . n B 1 39 TRP 39 286 286 TRP TRP B . n B 1 40 CYS 40 287 287 CYS CYS B . n B 1 41 LYS 41 288 288 LYS LYS B . n B 1 42 ARG 42 289 289 ARG ARG B . n B 1 43 ASN 43 290 290 ASN ASN B . n B 1 44 LEU 44 291 291 LEU LEU B . n B 1 45 GLY 45 292 292 GLY GLY B . n B 1 46 LEU 46 293 293 LEU LEU B . n B 1 47 ASP 47 294 294 ASP ASP B . n B 1 48 CYS 48 295 295 CYS CYS B . n B 1 49 ASP 49 296 296 ASP ASP B . n B 1 50 ASP 50 297 297 ASP ASP B . n B 1 51 THR 51 298 298 THR THR B . n B 1 52 PHE 52 299 299 PHE PHE B . n B 1 53 PHE 53 300 300 PHE PHE B . n B 1 54 GLN 54 301 301 GLN GLN B . n B 1 55 LYS 55 302 302 LYS LYS B . n B 1 56 ARG 56 303 303 ARG ARG B . n B 1 57 ILE 57 304 304 ILE ILE B . n B 1 58 GLU 58 305 305 GLU GLU B . n B 1 59 GLU 59 306 306 GLU GLU B . n B 1 60 PHE 60 307 307 PHE PHE B . n B 1 61 PHE 61 308 308 PHE PHE B . n B 1 62 ILE 62 309 309 ILE ILE B . n B 1 63 THR 63 310 310 THR THR B . n B 1 64 GLY 64 311 311 GLY GLY B . n B 1 65 GLU 65 312 312 GLU GLU B . n B 1 66 GLY 66 313 313 GLY GLY B . n B 1 67 HIS 67 314 314 HIS HIS B . n B 1 68 PHE 68 315 315 PHE PHE B . n B 1 69 ASN 69 316 316 ASN ASN B . n B 1 70 GLU 70 317 317 GLU GLU B . n B 1 71 VAL 71 318 318 VAL VAL B . n B 1 72 LEU 72 319 319 LEU LEU B . n B 1 73 GLN 73 320 320 GLN GLN B . n B 1 74 PHE 74 321 321 PHE PHE B . n B 1 75 ARG 75 322 322 ARG ARG B . n B 1 76 THR 76 323 323 THR THR B . n B 1 77 PRO 77 324 324 PRO PRO B . n B 1 78 GLY 78 325 325 GLY GLY B . n B 1 79 THR 79 326 326 THR THR B . n B 1 80 LEU 80 327 327 LEU LEU B . n B 1 81 SER 81 328 ? ? ? B . n B 1 82 THR 82 329 ? ? ? B . n B 1 83 THR 83 330 ? ? ? B . n B 1 84 GLU 84 331 ? ? ? B . n B 1 85 SER 85 332 ? ? ? B . n B 1 86 THR 86 333 ? ? ? B . n B 1 87 PRO 87 334 ? ? ? B . n B 1 88 ALA 88 335 ? ? ? B . n B 1 89 GLY 89 336 ? ? ? B . n B 1 90 LEU 90 337 ? ? ? B . n B 1 91 PRO 91 338 ? ? ? B . n B 1 92 THR 92 339 ? ? ? B . n B 1 93 ALA 93 340 ? ? ? B . n B 1 94 GLU 94 341 ? ? ? B . n B 1 95 PRO 95 342 342 PRO PRO B . n B 1 96 PHE 96 343 343 PHE PHE B . n B 1 97 LYS 97 344 344 LYS LYS B . n B 1 98 SER 98 345 345 SER SER B . n B 1 99 TYR 99 346 346 TYR TYR B . n B 1 100 PHE 100 347 347 PHE PHE B . n B 1 101 ALA 101 348 348 ALA ALA B . n B 1 102 LYS 102 349 349 LYS LYS B . n B 1 103 GLY 103 350 350 GLY GLY B . n B 1 104 PHE 104 351 351 PHE PHE B . n B 1 105 LEU 105 352 352 LEU LEU B . n B 1 106 SER 106 353 353 SER SER B . n B 1 107 ILE 107 354 354 ILE ILE B . n B 1 108 ASP 108 355 355 ASP ASP B . n B 1 109 SER 109 356 356 SER SER B . n B 1 110 GLY 110 357 357 GLY GLY B . n B 1 111 TYR 111 358 358 TYR TYR B . n B 1 112 TYR 112 359 359 TYR TYR B . n B 1 113 SER 113 360 360 SER SER B . n B 1 114 ALA 114 361 361 ALA ALA B . n B 1 115 LYS 115 362 362 LYS LYS B . n B 1 116 CYS 116 363 363 CYS CYS B . n B 1 117 TYR 117 364 364 TYR TYR B . n B 1 118 SER 118 365 365 SER SER B . n B 1 119 GLY 119 366 366 GLY GLY B . n B 1 120 THR 120 367 367 THR THR B . n B 1 121 SER 121 368 368 SER SER B . n B 1 122 ASN 122 369 369 ASN ASN B . n B 1 123 SER 123 370 370 SER SER B . n B 1 124 GLY 124 371 371 GLY GLY B . n B 1 125 LEU 125 372 372 LEU LEU B . n B 1 126 GLN 126 373 373 GLN GLN B . n B 1 127 LEU 127 374 374 LEU LEU B . n B 1 128 ILE 128 375 375 ILE ILE B . n B 1 129 ASN 129 376 376 ASN ASN B . n B 1 130 ILE 130 377 377 ILE ILE B . n B 1 131 THR 131 378 378 THR THR B . n B 1 132 ARG 132 379 379 ARG ARG B . n B 1 133 HIS 133 380 ? ? ? B . n B 1 134 SER 134 381 ? ? ? B . n B 1 135 THR 135 382 ? ? ? B . n B 1 136 ARG 136 383 ? ? ? B . n B 1 137 ILE 137 384 ? ? ? B . n B 1 138 VAL 138 385 ? ? ? B . n B 1 139 ASP 139 386 ? ? ? B . n B 1 140 THR 140 387 387 THR THR B . n B 1 141 PRO 141 388 388 PRO PRO B . n B 1 142 GLY 142 389 389 GLY GLY B . n B 1 143 PRO 143 390 390 PRO PRO B . n B 1 144 LYS 144 391 391 LYS LYS B . n B 1 145 ILE 145 392 392 ILE ILE B . n B 1 146 THR 146 393 393 THR THR B . n B 1 147 ASN 147 394 394 ASN ASN B . n B 1 148 LEU 148 395 395 LEU LEU B . n B 1 149 LYS 149 396 396 LYS LYS B . n B 1 150 THR 150 397 397 THR THR B . n B 1 151 ILE 151 398 398 ILE ILE B . n B 1 152 ASN 152 399 399 ASN ASN B . n B 1 153 CYS 153 400 400 CYS CYS B . n B 1 154 ILE 154 401 401 ILE ILE B . n B 1 155 ASN 155 402 402 ASN ASN B . n B 1 156 LEU 156 403 403 LEU LEU B . n B 1 157 LYS 157 404 404 LYS LYS B . n B 1 158 ALA 158 405 405 ALA ALA B . n B 1 159 SER 159 406 406 SER SER B . n B 1 160 ILE 160 407 407 ILE ILE B . n B 1 161 PHE 161 408 408 PHE PHE B . n B 1 162 LYS 162 409 409 LYS LYS B . n B 1 163 GLU 163 410 410 GLU GLU B . n B 1 164 HIS 164 411 411 HIS HIS B . n B 1 165 ARG 165 412 412 ARG ARG B . n B 1 166 GLU 166 413 413 GLU GLU B . n B 1 167 VAL 167 414 414 VAL VAL B . n B 1 168 GLU 168 415 415 GLU GLU B . n B 1 169 ILE 169 416 416 ILE ILE B . n B 1 170 ASN 170 417 417 ASN ASN B . n B 1 171 VAL 171 418 418 VAL VAL B . n B 1 172 LEU 172 419 419 LEU LEU B . n B 1 173 LEU 173 420 420 LEU LEU B . n B 1 174 PRO 174 421 421 PRO PRO B . n B 1 175 GLN 175 422 422 GLN GLN B . n B 1 176 VAL 176 423 423 VAL VAL B . n B 1 177 ALA 177 424 424 ALA ALA B . n B 1 178 VAL 178 425 425 VAL VAL B . n B 1 179 ASN 179 426 426 ASN ASN B . n B 1 180 LEU 180 427 427 LEU LEU B . n B 1 181 SER 181 428 428 SER SER B . n B 1 182 ASN 182 429 429 ASN ASN B . n B 1 183 CYS 183 430 430 CYS CYS B . n B 1 184 HIS 184 431 431 HIS HIS B . n B 1 185 VAL 185 432 432 VAL VAL B . n B 1 186 VAL 186 433 433 VAL VAL B . n B 1 187 ILE 187 434 434 ILE ILE B . n B 1 188 LYS 188 435 435 LYS LYS B . n B 1 189 SER 189 436 436 SER SER B . n B 1 190 HIS 190 437 437 HIS HIS B . n B 1 191 VAL 191 438 438 VAL VAL B . n B 1 192 CYS 192 439 439 CYS CYS B . n B 1 193 ASP 193 440 440 ASP ASP B . n B 1 194 TYR 194 441 441 TYR TYR B . n B 1 195 SER 195 442 442 SER SER B . n B 1 196 LEU 196 443 443 LEU LEU B . n B 1 197 ASP 197 444 444 ASP ASP B . n B 1 198 ILE 198 445 445 ILE ILE B . n B 1 199 ASP 199 446 446 ASP ASP B . n B 1 200 GLY 200 447 447 GLY GLY B . n B 1 201 ALA 201 448 448 ALA ALA B . n B 1 202 VAL 202 449 449 VAL VAL B . n B 1 203 ARG 203 450 450 ARG ARG B . n B 1 204 LEU 204 451 451 LEU LEU B . n B 1 205 PRO 205 452 452 PRO PRO B . n B 1 206 HIS 206 453 453 HIS HIS B . n B 1 207 ILE 207 454 454 ILE ILE B . n B 1 208 TYR 208 455 455 TYR TYR B . n B 1 209 HIS 209 456 456 HIS HIS B . n B 1 210 GLU 210 457 457 GLU GLU B . n B 1 211 GLY 211 458 458 GLY GLY B . n B 1 212 VAL 212 459 459 VAL VAL B . n B 1 213 PHE 213 460 460 PHE PHE B . n B 1 214 ILE 214 461 461 ILE ILE B . n B 1 215 PRO 215 462 462 PRO PRO B . n B 1 216 GLY 216 463 463 GLY GLY B . n B 1 217 THR 217 464 464 THR THR B . n B 1 218 TYR 218 465 465 TYR TYR B . n B 1 219 LYS 219 466 466 LYS LYS B . n B 1 220 ILE 220 467 467 ILE ILE B . n B 1 221 VAL 221 468 468 VAL VAL B . n B 1 222 ILE 222 469 469 ILE ILE B . n B 1 223 ASP 223 470 470 ASP ASP B . n B 1 224 LYS 224 471 471 LYS LYS B . n B 1 225 LYS 225 472 472 LYS LYS B . n B 1 226 ASN 226 473 473 ASN ASN B . n B 1 227 LYS 227 474 474 LYS LYS B . n B 1 228 LEU 228 475 475 LEU LEU B . n B 1 229 ASN 229 476 476 ASN ASN B . n B 1 230 ASP 230 477 477 ASP ASP B . n B 1 231 ARG 231 478 478 ARG ARG B . n B 1 232 CYS 232 479 479 CYS CYS B . n B 1 233 THR 233 480 480 THR THR B . n B 1 234 LEU 234 481 481 LEU LEU B . n B 1 235 PHE 235 482 482 PHE PHE B . n B 1 236 THR 236 483 483 THR THR B . n B 1 237 ASP 237 484 484 ASP ASP B . n B 1 238 CYS 238 485 485 CYS CYS B . n B 1 239 VAL 239 486 486 VAL VAL B . n B 1 240 ILE 240 487 ? ? ? B . n B 1 241 LYS 241 488 ? ? ? B . n B 1 242 GLY 242 489 ? ? ? B . n B 1 243 ARG 243 490 ? ? ? B . n B 1 244 GLU 244 491 ? ? ? B . n B 1 245 VAL 245 492 ? ? ? B . n B 1 246 ARG 246 493 ? ? ? B . n B 1 247 LYS 247 494 ? ? ? B . n B 1 248 GLY 248 495 ? ? ? B . n B 1 249 GLN 249 496 ? ? ? B . n B 1 250 SER 250 497 ? ? ? B . n B 1 251 VAL 251 498 ? ? ? B . n B 1 252 LEU 252 499 499 LEU LEU B . n B 1 253 ARG 253 500 500 ARG ARG B . n B 1 254 GLN 254 501 501 GLN GLN B . n B 1 255 TYR 255 502 502 TYR TYR B . n B 1 256 LYS 256 503 503 LYS LYS B . n B 1 257 THR 257 504 504 THR THR B . n B 1 258 GLU 258 505 505 GLU GLU B . n B 1 259 ILE 259 506 506 ILE ILE B . n B 1 260 ARG 260 507 507 ARG ARG B . n B 1 261 ILE 261 508 508 ILE ILE B . n B 1 262 GLY 262 509 509 GLY GLY B . n B 1 263 LYS 263 510 510 LYS LYS B . n B 1 264 ALA 264 511 511 ALA ALA B . n B 1 265 SER 265 512 512 SER SER B . n B 1 266 THR 266 513 513 THR THR B . n B 1 267 GLY 267 514 514 GLY GLY B . n B 1 268 SER 268 515 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG 1 603 518 NAG NAG B . G 4 HOH 1 701 4 HOH HOH A . G 4 HOH 2 702 10 HOH HOH A . G 4 HOH 3 703 8 HOH HOH A . G 4 HOH 4 704 3 HOH HOH A . G 4 HOH 5 705 9 HOH HOH A . G 4 HOH 6 706 6 HOH HOH A . H 4 HOH 1 701 5 HOH HOH B . H 4 HOH 2 702 1 HOH HOH B . H 4 HOH 3 703 7 HOH HOH B . H 4 HOH 4 704 2 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-02-05 2 'Structure model' 1 1 2020-03-11 3 'Structure model' 1 2 2020-04-15 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' atom_site 6 4 'Structure model' chem_comp 7 4 'Structure model' entity 8 4 'Structure model' pdbx_branch_scheme 9 4 'Structure model' pdbx_chem_comp_identifier 10 4 'Structure model' pdbx_entity_branch 11 4 'Structure model' pdbx_entity_branch_descriptor 12 4 'Structure model' pdbx_entity_branch_link 13 4 'Structure model' pdbx_entity_branch_list 14 4 'Structure model' pdbx_entity_nonpoly 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' pdbx_struct_assembly_gen 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation_author.identifier_ORCID' 12 4 'Structure model' '_atom_site.auth_asym_id' 13 4 'Structure model' '_atom_site.auth_seq_id' 14 4 'Structure model' '_atom_site.label_asym_id' 15 4 'Structure model' '_atom_site.label_entity_id' 16 4 'Structure model' '_chem_comp.name' 17 4 'Structure model' '_pdbx_entity_nonpoly.entity_id' 18 4 'Structure model' '_pdbx_entity_nonpoly.name' 19 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 20 4 'Structure model' '_struct_conn.pdbx_role' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 43.3577 71.8414 -16.3584 0.8550 ? -0.0614 ? 0.2190 ? 0.5732 ? -0.0968 ? 0.5478 ? 3.1597 ? -0.2198 ? -0.5288 ? 7.2648 ? -0.0722 ? 5.0511 ? 0.1055 ? 0.2947 ? -0.0988 ? -0.3868 ? 0.1102 ? -0.7760 ? 0.0450 ? 0.5264 ? 0.1103 ? 2 'X-RAY DIFFRACTION' ? refined 34.0954 52.0180 0.7980 1.0342 ? 0.1004 ? 0.2285 ? 0.4726 ? -0.0123 ? 0.6766 ? 2.5297 ? 0.7028 ? -0.8847 ? 5.3554 ? -3.1756 ? 4.0857 ? -0.0887 ? -0.0603 ? -0.2051 ? 0.4529 ? 0.2718 ? 0.1814 ? 0.0706 ? 0.0376 ? 0.0750 ? 3 'X-RAY DIFFRACTION' ? refined 41.5996 29.1285 10.5992 0.9701 ? 0.0716 ? 0.3167 ? 0.5347 ? 0.0595 ? 0.6161 ? 4.6325 ? 0.2675 ? 0.4163 ? 3.9433 ? -0.7608 ? 5.3042 ? -0.0382 ? -0.0549 ? -0.4146 ? -0.4777 ? -0.1437 ? -0.4843 ? 0.2348 ? 0.4793 ? 0.2618 ? 4 'X-RAY DIFFRACTION' ? refined 59.6879 29.8791 12.7523 1.0873 ? 0.0880 ? 0.4277 ? 1.1594 ? 0.2499 ? 1.4746 ? 7.6831 ? -0.4648 ? -3.7131 ? 0.9996 ? 0.8125 ? 1.9819 ? -0.2836 ? -1.2075 ? -0.6016 ? -0.6524 ? -0.1942 ? -1.8680 ? 0.0365 ? 1.2923 ? 0.7277 ? 5 'X-RAY DIFFRACTION' ? refined 47.7073 34.7327 30.4243 1.3346 ? -0.0118 ? 0.0910 ? 1.0942 ? 0.0325 ? 1.0352 ? 2.8407 ? -0.8056 ? -0.0572 ? 3.7574 ? 0.5047 ? 3.7026 ? 0.0097 ? -0.7259 ? 0.0881 ? 0.8554 ? 0.0171 ? -0.7734 ? 0.2516 ? 1.3063 ? 0.3907 ? 6 'X-RAY DIFFRACTION' ? refined 47.0673 47.4243 41.6438 1.9233 ? -0.3425 ? -0.1273 ? 1.5339 ? -0.0099 ? 1.4683 ? 3.2173 ? -2.0588 ? -2.6075 ? 5.0274 ? 2.7063 ? 4.1046 ? 0.1879 ? 0.0990 ? 1.6625 ? -0.0735 ? 0.0905 ? -2.4136 ? -0.6200 ? 1.7279 ? -0.2035 ? 7 'X-RAY DIFFRACTION' ? refined 40.8233 37.2685 34.1161 1.3705 ? 0.0026 ? 0.0354 ? 1.1300 ? 0.0125 ? 0.6687 ? 5.0235 ? -0.9209 ? -2.4534 ? 4.4113 ? 0.8891 ? 5.9525 ? -0.2578 ? -0.7366 ? -0.1194 ? 1.1925 ? 0.0114 ? -0.4949 ? -0.6302 ? 0.4321 ? 0.1458 ? 8 'X-RAY DIFFRACTION' ? refined 34.4047 39.1768 47.4941 2.8399 ? 0.2241 ? 0.6492 ? 1.2618 ? -0.4615 ? 0.6338 ? 3.0851 ? -2.5143 ? -0.0822 ? 3.6338 ? -1.4653 ? 1.0548 ? -0.0714 ? -0.7639 ? -0.5387 ? 0.7632 ? 0.3512 ? 0.8298 ? 0.7695 ? 0.2665 ? -0.0286 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 5 ? ? A 134 ? ;chain 'A' and (resid 5 through 134 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 135 ? ? A 262 ? ;chain 'A' and (resid 135 through 262 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? B 3 ? ? B 61 ? ;chain 'B' and (resid 3 through 61 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? B 62 ? ? B 95 ? ;chain 'B' and (resid 62 through 95 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? B 96 ? ? B 155 ? ;chain 'B' and (resid 96 through 155 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? B 156 ? ? B 171 ? ;chain 'B' and (resid 156 through 171 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? B 172 ? ? B 238 ? ;chain 'B' and (resid 172 through 238 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? B 239 ? ? B 267 ? ;chain 'B' and (resid 239 through 267 ) ; # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 6 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 7 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? BUCCANEER ? ? ? . 8 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 9 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 10 # _pdbx_entry_details.entry_id 6VKF _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG A CYS 287 ? ? SG A CYS 295 ? ? 1.75 2 1 OD2 A ASP 279 ? ? O A HOH 701 ? ? 2.03 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 N A TYR 346 ? ? 1_555 OE2 B GLU 312 ? ? 2_755 1.86 2 1 OE2 A GLU 457 ? ? 1_555 NH2 B ARG 478 ? ? 1_554 2.03 3 1 OD1 A ASP 444 ? ? 1_555 NH2 A ARG 493 ? ? 2_655 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A CYS 295 ? ? SG A CYS 295 ? ? 1.615 1.812 -0.197 0.016 N 2 1 CB B CYS 295 ? ? SG B CYS 295 ? ? 1.654 1.812 -0.158 0.016 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 295 ? ? -78.73 47.81 2 1 ILE A 309 ? ? -124.32 -50.42 3 1 VAL A 438 ? ? -98.23 -67.73 4 1 ASP A 444 ? ? -140.82 12.49 5 1 ASN A 476 ? ? -102.29 48.98 6 1 CYS B 295 ? ? -83.60 42.59 7 1 ILE B 309 ? ? -103.89 -66.30 8 1 THR B 323 ? ? -117.37 79.11 9 1 ARG B 412 ? ? 37.24 47.59 10 1 VAL B 438 ? ? -92.50 -66.49 11 1 HIS B 456 ? ? -151.72 82.75 12 1 ASN B 476 ? ? -89.72 37.37 13 1 GLN B 501 ? ? 179.92 116.65 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 248 ? A ASN 1 2 1 Y 1 A LEU 249 ? A LEU 2 3 1 Y 1 A LYS 250 ? A LYS 3 4 1 Y 1 A MET 251 ? A MET 4 5 1 Y 1 A THR 323 ? A THR 76 6 1 Y 1 A PRO 324 ? A PRO 77 7 1 Y 1 A GLY 325 ? A GLY 78 8 1 Y 1 A THR 326 ? A THR 79 9 1 Y 1 A LEU 327 ? A LEU 80 10 1 Y 1 A SER 328 ? A SER 81 11 1 Y 1 A THR 329 ? A THR 82 12 1 Y 1 A THR 330 ? A THR 83 13 1 Y 1 A GLU 331 ? A GLU 84 14 1 Y 1 A SER 332 ? A SER 85 15 1 Y 1 A THR 333 ? A THR 86 16 1 Y 1 A PRO 334 ? A PRO 87 17 1 Y 1 A ALA 335 ? A ALA 88 18 1 Y 1 A GLY 336 ? A GLY 89 19 1 Y 1 A LEU 337 ? A LEU 90 20 1 Y 1 A PRO 338 ? A PRO 91 21 1 Y 1 A THR 339 ? A THR 92 22 1 Y 1 A ALA 340 ? A ALA 93 23 1 Y 1 A LYS 510 ? A LYS 263 24 1 Y 1 A ALA 511 ? A ALA 264 25 1 Y 1 A SER 512 ? A SER 265 26 1 Y 1 A THR 513 ? A THR 266 27 1 Y 1 A GLY 514 ? A GLY 267 28 1 Y 1 A SER 515 ? A SER 268 29 1 Y 1 B ASN 248 ? B ASN 1 30 1 Y 1 B LEU 249 ? B LEU 2 31 1 Y 1 B SER 328 ? B SER 81 32 1 Y 1 B THR 329 ? B THR 82 33 1 Y 1 B THR 330 ? B THR 83 34 1 Y 1 B GLU 331 ? B GLU 84 35 1 Y 1 B SER 332 ? B SER 85 36 1 Y 1 B THR 333 ? B THR 86 37 1 Y 1 B PRO 334 ? B PRO 87 38 1 Y 1 B ALA 335 ? B ALA 88 39 1 Y 1 B GLY 336 ? B GLY 89 40 1 Y 1 B LEU 337 ? B LEU 90 41 1 Y 1 B PRO 338 ? B PRO 91 42 1 Y 1 B THR 339 ? B THR 92 43 1 Y 1 B ALA 340 ? B ALA 93 44 1 Y 1 B GLU 341 ? B GLU 94 45 1 Y 1 B HIS 380 ? B HIS 133 46 1 Y 1 B SER 381 ? B SER 134 47 1 Y 1 B THR 382 ? B THR 135 48 1 Y 1 B ARG 383 ? B ARG 136 49 1 Y 1 B ILE 384 ? B ILE 137 50 1 Y 1 B VAL 385 ? B VAL 138 51 1 Y 1 B ASP 386 ? B ASP 139 52 1 Y 1 B ILE 487 ? B ILE 240 53 1 Y 1 B LYS 488 ? B LYS 241 54 1 Y 1 B GLY 489 ? B GLY 242 55 1 Y 1 B ARG 490 ? B ARG 243 56 1 Y 1 B GLU 491 ? B GLU 244 57 1 Y 1 B VAL 492 ? B VAL 245 58 1 Y 1 B ARG 493 ? B ARG 246 59 1 Y 1 B LYS 494 ? B LYS 247 60 1 Y 1 B GLY 495 ? B GLY 248 61 1 Y 1 B GLN 496 ? B GLN 249 62 1 Y 1 B SER 497 ? B SER 250 63 1 Y 1 B VAL 498 ? B VAL 251 64 1 Y 1 B SER 515 ? B SER 268 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 NAG 1 C NAG 1 A NAG 513 n C 2 NAG 2 C NAG 2 A NAG 514 n D 2 NAG 1 D NAG 1 A NAG 515 n D 2 NAG 2 D NAG 2 A NAG 516 n E 2 NAG 1 E NAG 1 B NAG 516 n E 2 NAG 2 E NAG 2 B NAG 517 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #