HEADER VIRAL PROTEIN 20-JAN-20 6VKF TITLE CCHFV GP38 (IBAR10200) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP38; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRIMEAN-CONGO HEMORRHAGIC FEVER SOURCE 3 ORTHONAIROVIRUS; SOURCE 4 ORGANISM_TAXID: 1980519; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SECRETORY, VIRAL, GLYCOPROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.MISHRA,J.S.MCLELLAN REVDAT 4 29-JUL-20 6VKF 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 15-APR-20 6VKF 1 JRNL REVDAT 2 11-MAR-20 6VKF 1 JRNL REVDAT 1 05-FEB-20 6VKF 0 JRNL AUTH A.K.MISHRA,C.L.MOYER,D.M.ABELSON,D.J.DEER,K.EL OMARI, JRNL AUTH 2 R.DUMAN,L.LOBEL,J.J.LUTWAMA,J.M.DYE,A.WAGNER,K.CHANDRAN, JRNL AUTH 3 R.W.CROSS,T.W.GEISBERT,L.ZEITLIN,Z.A.BORNHOLDT,J.S.MCLELLAN JRNL TITL STRUCTURE AND CHARACTERIZATION OF CRIMEAN-CONGO HEMORRHAGIC JRNL TITL 2 FEVER VIRUS GP38. JRNL REF J.VIROL. V. 94 2020 JRNL REFN ESSN 1098-5514 JRNL PMID 31996434 JRNL DOI 10.1128/JVI.02005-19 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 25070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.4810 - 5.2485 0.97 2697 146 0.2001 0.2309 REMARK 3 2 5.2485 - 4.1665 0.96 2612 151 0.1757 0.2056 REMARK 3 3 4.1665 - 3.6400 0.98 2682 151 0.2231 0.2546 REMARK 3 4 3.6400 - 3.3073 0.95 2582 138 0.2447 0.2937 REMARK 3 5 3.3073 - 3.0702 0.98 2711 124 0.2654 0.3204 REMARK 3 6 3.0702 - 2.8892 0.97 2692 99 0.3065 0.3181 REMARK 3 7 2.8892 - 2.7446 0.95 2572 124 0.2823 0.3153 REMARK 3 8 2.7446 - 2.6251 0.97 2657 135 0.2903 0.3420 REMARK 3 9 2.6251 - 2.5240 0.98 2659 138 0.3177 0.3682 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3577 71.8414 -16.3584 REMARK 3 T TENSOR REMARK 3 T11: 0.8550 T22: 0.5732 REMARK 3 T33: 0.5478 T12: -0.0614 REMARK 3 T13: 0.2190 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 3.1597 L22: 7.2648 REMARK 3 L33: 5.0511 L12: -0.2198 REMARK 3 L13: -0.5288 L23: -0.0722 REMARK 3 S TENSOR REMARK 3 S11: 0.1055 S12: 0.2947 S13: -0.0988 REMARK 3 S21: -0.3868 S22: 0.1102 S23: -0.7760 REMARK 3 S31: 0.0450 S32: 0.5264 S33: 0.1103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0954 52.0180 0.7980 REMARK 3 T TENSOR REMARK 3 T11: 1.0342 T22: 0.4726 REMARK 3 T33: 0.6766 T12: 0.1004 REMARK 3 T13: 0.2285 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.5297 L22: 5.3554 REMARK 3 L33: 4.0857 L12: 0.7028 REMARK 3 L13: -0.8847 L23: -3.1756 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: -0.0603 S13: -0.2051 REMARK 3 S21: 0.4529 S22: 0.2718 S23: 0.1814 REMARK 3 S31: 0.0706 S32: 0.0376 S33: 0.0750 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5996 29.1285 10.5992 REMARK 3 T TENSOR REMARK 3 T11: 0.9701 T22: 0.5347 REMARK 3 T33: 0.6161 T12: 0.0716 REMARK 3 T13: 0.3167 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 4.6325 L22: 3.9433 REMARK 3 L33: 5.3042 L12: 0.2675 REMARK 3 L13: 0.4163 L23: -0.7608 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: -0.0549 S13: -0.4146 REMARK 3 S21: -0.4777 S22: -0.1437 S23: -0.4843 REMARK 3 S31: 0.2348 S32: 0.4793 S33: 0.2618 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6879 29.8791 12.7523 REMARK 3 T TENSOR REMARK 3 T11: 1.0873 T22: 1.1594 REMARK 3 T33: 1.4746 T12: 0.0880 REMARK 3 T13: 0.4277 T23: 0.2499 REMARK 3 L TENSOR REMARK 3 L11: 7.6831 L22: 0.9996 REMARK 3 L33: 1.9819 L12: -0.4648 REMARK 3 L13: -3.7131 L23: 0.8125 REMARK 3 S TENSOR REMARK 3 S11: -0.2836 S12: -1.2075 S13: -0.6016 REMARK 3 S21: -0.6524 S22: -0.1942 S23: -1.8680 REMARK 3 S31: 0.0365 S32: 1.2923 S33: 0.7277 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7073 34.7327 30.4243 REMARK 3 T TENSOR REMARK 3 T11: 1.3346 T22: 1.0942 REMARK 3 T33: 1.0352 T12: -0.0118 REMARK 3 T13: 0.0910 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.8407 L22: 3.7574 REMARK 3 L33: 3.7026 L12: -0.8056 REMARK 3 L13: -0.0572 L23: 0.5047 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.7259 S13: 0.0881 REMARK 3 S21: 0.8554 S22: 0.0171 S23: -0.7734 REMARK 3 S31: 0.2516 S32: 1.3063 S33: 0.3907 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0673 47.4243 41.6438 REMARK 3 T TENSOR REMARK 3 T11: 1.9233 T22: 1.5339 REMARK 3 T33: 1.4683 T12: -0.3425 REMARK 3 T13: -0.1273 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 3.2173 L22: 5.0274 REMARK 3 L33: 4.1046 L12: -2.0588 REMARK 3 L13: -2.6075 L23: 2.7063 REMARK 3 S TENSOR REMARK 3 S11: 0.1879 S12: 0.0990 S13: 1.6625 REMARK 3 S21: -0.0735 S22: 0.0905 S23: -2.4136 REMARK 3 S31: -0.6200 S32: 1.7279 S33: -0.2035 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8233 37.2685 34.1161 REMARK 3 T TENSOR REMARK 3 T11: 1.3705 T22: 1.1300 REMARK 3 T33: 0.6687 T12: 0.0026 REMARK 3 T13: 0.0354 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 5.0235 L22: 4.4113 REMARK 3 L33: 5.9525 L12: -0.9209 REMARK 3 L13: -2.4534 L23: 0.8891 REMARK 3 S TENSOR REMARK 3 S11: -0.2578 S12: -0.7366 S13: -0.1194 REMARK 3 S21: 1.1925 S22: 0.0114 S23: -0.4949 REMARK 3 S31: -0.6302 S32: 0.4321 S33: 0.1458 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4047 39.1768 47.4941 REMARK 3 T TENSOR REMARK 3 T11: 2.8399 T22: 1.2618 REMARK 3 T33: 0.6338 T12: 0.2241 REMARK 3 T13: 0.6492 T23: -0.4615 REMARK 3 L TENSOR REMARK 3 L11: 3.0851 L22: 3.6338 REMARK 3 L33: 1.0548 L12: -2.5143 REMARK 3 L13: -0.0822 L23: -1.4653 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: -0.7639 S13: -0.5387 REMARK 3 S21: 0.7632 S22: 0.3512 S23: 0.8298 REMARK 3 S31: 0.7695 S32: 0.2665 S33: -0.0286 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-18; 06-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; DIAMOND REMARK 200 BEAMLINE : 19-ID; I23 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979; 2.7551 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; PIXEL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; DECTRIS REMARK 200 PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 51.481 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE PH 5.5, PEG 400, PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.93500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 248 REMARK 465 LEU A 249 REMARK 465 LYS A 250 REMARK 465 MET A 251 REMARK 465 THR A 323 REMARK 465 PRO A 324 REMARK 465 GLY A 325 REMARK 465 THR A 326 REMARK 465 LEU A 327 REMARK 465 SER A 328 REMARK 465 THR A 329 REMARK 465 THR A 330 REMARK 465 GLU A 331 REMARK 465 SER A 332 REMARK 465 THR A 333 REMARK 465 PRO A 334 REMARK 465 ALA A 335 REMARK 465 GLY A 336 REMARK 465 LEU A 337 REMARK 465 PRO A 338 REMARK 465 THR A 339 REMARK 465 ALA A 340 REMARK 465 LYS A 510 REMARK 465 ALA A 511 REMARK 465 SER A 512 REMARK 465 THR A 513 REMARK 465 GLY A 514 REMARK 465 SER A 515 REMARK 465 ASN B 248 REMARK 465 LEU B 249 REMARK 465 SER B 328 REMARK 465 THR B 329 REMARK 465 THR B 330 REMARK 465 GLU B 331 REMARK 465 SER B 332 REMARK 465 THR B 333 REMARK 465 PRO B 334 REMARK 465 ALA B 335 REMARK 465 GLY B 336 REMARK 465 LEU B 337 REMARK 465 PRO B 338 REMARK 465 THR B 339 REMARK 465 ALA B 340 REMARK 465 GLU B 341 REMARK 465 HIS B 380 REMARK 465 SER B 381 REMARK 465 THR B 382 REMARK 465 ARG B 383 REMARK 465 ILE B 384 REMARK 465 VAL B 385 REMARK 465 ASP B 386 REMARK 465 ILE B 487 REMARK 465 LYS B 488 REMARK 465 GLY B 489 REMARK 465 ARG B 490 REMARK 465 GLU B 491 REMARK 465 VAL B 492 REMARK 465 ARG B 493 REMARK 465 LYS B 494 REMARK 465 GLY B 495 REMARK 465 GLN B 496 REMARK 465 SER B 497 REMARK 465 VAL B 498 REMARK 465 SER B 515 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 287 SG CYS A 295 1.75 REMARK 500 OD2 ASP A 279 O HOH A 701 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N TYR A 346 OE2 GLU B 312 2755 1.86 REMARK 500 OE2 GLU A 457 NH2 ARG B 478 1554 2.03 REMARK 500 OD1 ASP A 444 NH2 ARG A 493 2655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 295 CB CYS A 295 SG -0.197 REMARK 500 CYS B 295 CB CYS B 295 SG -0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 295 47.81 -78.73 REMARK 500 ILE A 309 -50.42 -124.32 REMARK 500 VAL A 438 -67.73 -98.23 REMARK 500 ASP A 444 12.49 -140.82 REMARK 500 ASN A 476 48.98 -102.29 REMARK 500 CYS B 295 42.59 -83.60 REMARK 500 ILE B 309 -66.30 -103.89 REMARK 500 THR B 323 79.11 -117.37 REMARK 500 ARG B 412 47.59 37.24 REMARK 500 VAL B 438 -66.49 -92.50 REMARK 500 HIS B 456 82.75 -151.72 REMARK 500 ASN B 476 37.37 -89.72 REMARK 500 GLN B 501 116.65 179.92 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6VKF A 248 515 UNP A0A1V0G0G3_9VIRU DBREF2 6VKF A A0A1V0G0G3 248 515 DBREF1 6VKF B 248 515 UNP A0A1V0G0G3_9VIRU DBREF2 6VKF B A0A1V0G0G3 248 515 SEQRES 1 A 268 ASN LEU LYS MET GLU ILE ILE LEU THR LEU SER GLN GLY SEQRES 2 A 268 LEU LYS LYS TYR TYR GLY LYS ILE LEU ARG LEU LEU GLN SEQRES 3 A 268 LEU THR LEU GLU GLU ASP THR GLU GLY LEU LEU GLU TRP SEQRES 4 A 268 CYS LYS ARG ASN LEU GLY LEU ASP CYS ASP ASP THR PHE SEQRES 5 A 268 PHE GLN LYS ARG ILE GLU GLU PHE PHE ILE THR GLY GLU SEQRES 6 A 268 GLY HIS PHE ASN GLU VAL LEU GLN PHE ARG THR PRO GLY SEQRES 7 A 268 THR LEU SER THR THR GLU SER THR PRO ALA GLY LEU PRO SEQRES 8 A 268 THR ALA GLU PRO PHE LYS SER TYR PHE ALA LYS GLY PHE SEQRES 9 A 268 LEU SER ILE ASP SER GLY TYR TYR SER ALA LYS CYS TYR SEQRES 10 A 268 SER GLY THR SER ASN SER GLY LEU GLN LEU ILE ASN ILE SEQRES 11 A 268 THR ARG HIS SER THR ARG ILE VAL ASP THR PRO GLY PRO SEQRES 12 A 268 LYS ILE THR ASN LEU LYS THR ILE ASN CYS ILE ASN LEU SEQRES 13 A 268 LYS ALA SER ILE PHE LYS GLU HIS ARG GLU VAL GLU ILE SEQRES 14 A 268 ASN VAL LEU LEU PRO GLN VAL ALA VAL ASN LEU SER ASN SEQRES 15 A 268 CYS HIS VAL VAL ILE LYS SER HIS VAL CYS ASP TYR SER SEQRES 16 A 268 LEU ASP ILE ASP GLY ALA VAL ARG LEU PRO HIS ILE TYR SEQRES 17 A 268 HIS GLU GLY VAL PHE ILE PRO GLY THR TYR LYS ILE VAL SEQRES 18 A 268 ILE ASP LYS LYS ASN LYS LEU ASN ASP ARG CYS THR LEU SEQRES 19 A 268 PHE THR ASP CYS VAL ILE LYS GLY ARG GLU VAL ARG LYS SEQRES 20 A 268 GLY GLN SER VAL LEU ARG GLN TYR LYS THR GLU ILE ARG SEQRES 21 A 268 ILE GLY LYS ALA SER THR GLY SER SEQRES 1 B 268 ASN LEU LYS MET GLU ILE ILE LEU THR LEU SER GLN GLY SEQRES 2 B 268 LEU LYS LYS TYR TYR GLY LYS ILE LEU ARG LEU LEU GLN SEQRES 3 B 268 LEU THR LEU GLU GLU ASP THR GLU GLY LEU LEU GLU TRP SEQRES 4 B 268 CYS LYS ARG ASN LEU GLY LEU ASP CYS ASP ASP THR PHE SEQRES 5 B 268 PHE GLN LYS ARG ILE GLU GLU PHE PHE ILE THR GLY GLU SEQRES 6 B 268 GLY HIS PHE ASN GLU VAL LEU GLN PHE ARG THR PRO GLY SEQRES 7 B 268 THR LEU SER THR THR GLU SER THR PRO ALA GLY LEU PRO SEQRES 8 B 268 THR ALA GLU PRO PHE LYS SER TYR PHE ALA LYS GLY PHE SEQRES 9 B 268 LEU SER ILE ASP SER GLY TYR TYR SER ALA LYS CYS TYR SEQRES 10 B 268 SER GLY THR SER ASN SER GLY LEU GLN LEU ILE ASN ILE SEQRES 11 B 268 THR ARG HIS SER THR ARG ILE VAL ASP THR PRO GLY PRO SEQRES 12 B 268 LYS ILE THR ASN LEU LYS THR ILE ASN CYS ILE ASN LEU SEQRES 13 B 268 LYS ALA SER ILE PHE LYS GLU HIS ARG GLU VAL GLU ILE SEQRES 14 B 268 ASN VAL LEU LEU PRO GLN VAL ALA VAL ASN LEU SER ASN SEQRES 15 B 268 CYS HIS VAL VAL ILE LYS SER HIS VAL CYS ASP TYR SER SEQRES 16 B 268 LEU ASP ILE ASP GLY ALA VAL ARG LEU PRO HIS ILE TYR SEQRES 17 B 268 HIS GLU GLY VAL PHE ILE PRO GLY THR TYR LYS ILE VAL SEQRES 18 B 268 ILE ASP LYS LYS ASN LYS LEU ASN ASP ARG CYS THR LEU SEQRES 19 B 268 PHE THR ASP CYS VAL ILE LYS GLY ARG GLU VAL ARG LYS SEQRES 20 B 268 GLY GLN SER VAL LEU ARG GLN TYR LYS THR GLU ILE ARG SEQRES 21 B 268 ILE GLY LYS ALA SER THR GLY SER HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG B 603 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 7 HOH *10(H2 O) HELIX 1 AA1 THR A 256 LEU A 272 1 17 HELIX 2 AA2 GLY A 282 GLY A 292 1 11 HELIX 3 AA3 ASP A 296 ILE A 309 1 14 HELIX 4 AA4 GLY A 366 ASN A 369 5 4 HELIX 5 AA5 ASN A 394 ILE A 398 5 5 HELIX 6 AA6 ASN A 473 ASP A 477 5 5 HELIX 7 AA7 THR B 256 LEU B 272 1 17 HELIX 8 AA8 GLY B 282 GLY B 292 1 11 HELIX 9 AA9 ASP B 296 ILE B 309 1 14 HELIX 10 AB1 ASN B 394 ILE B 398 5 5 HELIX 11 AB2 LYS B 409 HIS B 411 5 3 HELIX 12 AB3 LYS B 474 ARG B 478 5 5 SHEET 1 AA1 2 PHE A 315 ASN A 316 0 SHEET 2 AA1 2 TYR A 346 PHE A 347 -1 O PHE A 347 N PHE A 315 SHEET 1 AA2 7 PHE A 351 ASP A 355 0 SHEET 2 AA2 7 SER A 360 TYR A 364 -1 O CYS A 363 N LEU A 352 SHEET 3 AA2 7 CYS A 439 LEU A 443 -1 O ASP A 440 N LYS A 362 SHEET 4 AA2 7 VAL A 432 LYS A 435 -1 N ILE A 434 O TYR A 441 SHEET 5 AA2 7 TYR A 465 ASP A 470 -1 O LYS A 466 N LYS A 435 SHEET 6 AA2 7 GLU A 413 VAL A 418 -1 N VAL A 418 O TYR A 465 SHEET 7 AA2 7 LEU A 403 PHE A 408 -1 N LYS A 404 O ASN A 417 SHEET 1 AA3 3 LEU A 374 ASN A 376 0 SHEET 2 AA3 3 VAL A 459 PRO A 462 -1 O ILE A 461 N ILE A 375 SHEET 3 AA3 3 ILE A 454 TYR A 455 -1 N ILE A 454 O PHE A 460 SHEET 1 AA4 5 VAL A 385 ASP A 386 0 SHEET 2 AA4 5 SER A 497 ARG A 507 1 O GLN A 501 N VAL A 385 SHEET 3 AA4 5 THR A 480 GLU A 491 -1 N LEU A 481 O ILE A 506 SHEET 4 AA4 5 VAL A 425 SER A 428 -1 N ASN A 426 O PHE A 482 SHEET 5 AA4 5 GLY A 447 ALA A 448 -1 O GLY A 447 N LEU A 427 SHEET 1 AA5 4 ILE A 392 THR A 393 0 SHEET 2 AA5 4 SER A 497 ARG A 507 1 O GLU A 505 N THR A 393 SHEET 3 AA5 4 THR A 480 GLU A 491 -1 N LEU A 481 O ILE A 506 SHEET 4 AA5 4 MET B 251 ILE B 253 -1 O GLU B 252 N ARG A 490 SHEET 1 AA6 2 HIS B 314 PHE B 315 0 SHEET 2 AA6 2 PHE B 321 ARG B 322 -1 O ARG B 322 N HIS B 314 SHEET 1 AA7 7 PHE B 351 ASP B 355 0 SHEET 2 AA7 7 SER B 360 TYR B 364 -1 O CYS B 363 N LEU B 352 SHEET 3 AA7 7 CYS B 439 LEU B 443 -1 O ASP B 440 N LYS B 362 SHEET 4 AA7 7 VAL B 432 LYS B 435 -1 N ILE B 434 O TYR B 441 SHEET 5 AA7 7 TYR B 465 ASP B 470 -1 O VAL B 468 N VAL B 433 SHEET 6 AA7 7 GLU B 413 VAL B 418 -1 N ILE B 416 O ILE B 467 SHEET 7 AA7 7 LEU B 403 PHE B 408 -1 N LYS B 404 O ASN B 417 SHEET 1 AA8 3 LEU B 374 ASN B 376 0 SHEET 2 AA8 3 VAL B 459 PRO B 462 -1 O ILE B 461 N ILE B 375 SHEET 3 AA8 3 ILE B 454 TYR B 455 -1 N ILE B 454 O PHE B 460 SHEET 1 AA9 5 ILE B 392 THR B 393 0 SHEET 2 AA9 5 TYR B 502 ARG B 507 1 O GLU B 505 N THR B 393 SHEET 3 AA9 5 THR B 480 CYS B 485 -1 N LEU B 481 O ILE B 506 SHEET 4 AA9 5 VAL B 425 SER B 428 -1 N ASN B 426 O PHE B 482 SHEET 5 AA9 5 GLY B 447 ALA B 448 -1 O GLY B 447 N LEU B 427 SSBOND 1 CYS A 363 CYS A 439 1555 1555 2.07 SSBOND 2 CYS A 400 CYS A 485 1555 1555 2.04 SSBOND 3 CYS A 430 CYS A 479 1555 1555 2.07 SSBOND 4 CYS B 287 CYS B 295 1555 1555 1.82 SSBOND 5 CYS B 363 CYS B 439 1555 1555 2.10 SSBOND 6 CYS B 400 CYS B 485 1555 1555 2.07 SSBOND 7 CYS B 430 CYS B 479 1555 1555 2.04 LINK ND2 ASN A 376 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 426 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 376 C1 NAG E 1 1555 1555 1.48 LINK ND2 ASN B 426 C1 NAG B 603 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 CRYST1 62.350 97.870 66.010 90.00 103.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016039 0.000000 0.003960 0.00000 SCALE2 0.000000 0.010218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015604 0.00000