HEADER VIRAL PROTEIN 21-JAN-20 6VKM TITLE CRYSTAL STRUCTURE OF STABILIZED GP FROM MAKONA VARIANT OF EBOLA VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRION SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZAIRE EBOLAVIRUS; SOURCE 3 ORGANISM_TAXID: 186538; SOURCE 4 GENE: GP; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F KEYWDS VIRUS, GLYCOPROTEIN, FUSION, TRIMER, PREFUSION, EBOV, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.A.GILMAN,L.RUTTEN,J.P.M.LANGEDIJK,J.S.MCLELLAN REVDAT 3 11-OCT-23 6VKM 1 HETSYN REVDAT 2 29-JUL-20 6VKM 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 15-APR-20 6VKM 0 JRNL AUTH L.RUTTEN,M.S.A.GILMAN,S.BLOKLAND,J.JURASZEK,J.S.MCLELLAN, JRNL AUTH 2 J.P.M.LANGEDIJK JRNL TITL STRUCTURE-BASED DESIGN OF PREFUSION-STABILIZED FILOVIRUS JRNL TITL 2 GLYCOPROTEIN TRIMERS. JRNL REF CELL REP V. 30 4540 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32234486 JRNL DOI 10.1016/J.CELREP.2020.03.025 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 10491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5300 - 5.5539 0.80 2481 138 0.2816 0.2774 REMARK 3 2 5.5539 - 4.4093 0.83 2484 132 0.2701 0.2786 REMARK 3 3 4.4093 - 3.8522 0.84 2482 134 0.2822 0.3462 REMARK 3 4 3.8522 - 3.5001 0.85 2519 121 0.3108 0.3312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 33:526) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3199 39.8087 -40.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.4753 T22: 0.2660 REMARK 3 T33: 0.5117 T12: 0.0191 REMARK 3 T13: 0.0370 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.8987 L22: 2.3330 REMARK 3 L33: 2.3550 L12: 0.5159 REMARK 3 L13: -0.0764 L23: -0.1009 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.2825 S13: -0.3355 REMARK 3 S21: 0.1923 S22: -0.0613 S23: 0.0220 REMARK 3 S31: 0.5194 S32: -0.1489 S33: 0.0397 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 527:620 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2472 53.8682 -61.8317 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2995 REMARK 3 T33: 0.5156 T12: -0.0188 REMARK 3 T13: -0.0887 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 1.1015 L22: 2.1727 REMARK 3 L33: 1.8912 L12: 0.2859 REMARK 3 L13: -0.5277 L23: 0.4788 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.1805 S13: -0.1850 REMARK 3 S21: -0.3244 S22: 0.0754 S23: 0.2075 REMARK 3 S31: 0.2114 S32: -0.2691 S33: -0.0426 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1000246564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10491 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.34600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 5JQ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9.8% PEG 6000, 0.1 M SODIUM CITRATE PH REMARK 280 5.2, 3% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.55500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.65204 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 131.06000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.55500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.65204 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 131.06000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.55500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.65204 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 131.06000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.55500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.65204 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 131.06000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.55500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.65204 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.06000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.55500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.65204 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 131.06000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.30409 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 262.12000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.30409 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 262.12000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.30409 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 262.12000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.30409 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 262.12000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.30409 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 262.12000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.30409 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 262.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 56.55500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.95613 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -56.55500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 97.95613 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 ASP A 12 REMARK 465 ARG A 13 REMARK 465 PHE A 14 REMARK 465 LYS A 15 REMARK 465 ARG A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 PHE A 19 REMARK 465 PHE A 20 REMARK 465 LEU A 21 REMARK 465 TRP A 22 REMARK 465 VAL A 23 REMARK 465 ILE A 24 REMARK 465 ILE A 25 REMARK 465 LEU A 26 REMARK 465 PHE A 27 REMARK 465 GLN A 28 REMARK 465 ARG A 29 REMARK 465 THR A 30 REMARK 465 PHE A 31 REMARK 465 SER A 32 REMARK 465 PHE A 193 REMARK 465 PHE A 194 REMARK 465 SER A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 PRO A 198 REMARK 465 LEU A 199 REMARK 465 ARG A 200 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 204 REMARK 465 ALA A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 SER A 211 REMARK 465 GLY A 212 REMARK 465 TYR A 213 REMARK 465 TYR A 214 REMARK 465 THR A 284 REMARK 465 ILE A 285 REMARK 465 GLY A 286 REMARK 465 GLU A 287 REMARK 465 TRP A 288 REMARK 465 LYS A 453 REMARK 465 LYS A 454 REMARK 465 ASN A 455 REMARK 465 LEU A 456 REMARK 465 THR A 457 REMARK 465 ARG A 458 REMARK 465 LYS A 459 REMARK 465 ILE A 460 REMARK 465 ARG A 461 REMARK 465 SER A 462 REMARK 465 GLU A 463 REMARK 465 GLU A 464 REMARK 465 LEU A 465 REMARK 465 SER A 466 REMARK 465 PHE A 467 REMARK 465 THR A 468 REMARK 465 ALA A 469 REMARK 465 VAL A 470 REMARK 465 SER A 471 REMARK 465 ASN A 472 REMARK 465 SER A 473 REMARK 465 ALA A 474 REMARK 465 SER A 475 REMARK 465 SER A 476 REMARK 465 GLY A 477 REMARK 465 LYS A 478 REMARK 465 LEU A 479 REMARK 465 GLY A 480 REMARK 465 LEU A 481 REMARK 465 ILE A 482 REMARK 465 THR A 483 REMARK 465 ASN A 484 REMARK 465 THR A 485 REMARK 465 ILE A 486 REMARK 465 ALA A 487 REMARK 465 GLY A 488 REMARK 465 VAL A 489 REMARK 465 ALA A 490 REMARK 465 GLY A 491 REMARK 465 LEU A 492 REMARK 465 ILE A 493 REMARK 465 THR A 494 REMARK 465 GLY A 495 REMARK 465 GLY A 496 REMARK 465 ARG A 497 REMARK 465 ARG A 498 REMARK 465 THR A 499 REMARK 465 ARG A 500 REMARK 465 ARG A 501 REMARK 465 ASP A 621 REMARK 465 LYS A 622 REMARK 465 ILE A 623 REMARK 465 ASP A 624 REMARK 465 GLN A 625 REMARK 465 ILE A 626 REMARK 465 ILE A 627 REMARK 465 HIS A 628 REMARK 465 ASP A 629 REMARK 465 PHE A 630 REMARK 465 VAL A 631 REMARK 465 ASP A 632 REMARK 465 LYS A 633 REMARK 465 THR A 634 REMARK 465 LEU A 635 REMARK 465 PRO A 636 REMARK 465 ASP A 637 REMARK 465 GLN A 638 REMARK 465 GLY A 639 REMARK 465 ASP A 640 REMARK 465 ASN A 641 REMARK 465 ASP A 642 REMARK 465 ASN A 643 REMARK 465 TRP A 644 REMARK 465 TRP A 645 REMARK 465 THR A 646 REMARK 465 GLY A 647 REMARK 465 HIS A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 HIS A 651 REMARK 465 HIS A 652 REMARK 465 HIS A 653 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 46 145.72 174.56 REMARK 500 ASP A 47 -46.81 -148.32 REMARK 500 TYR A 162 -157.33 -120.27 REMARK 500 ASP A 163 88.85 -66.65 REMARK 500 THR A 270 -32.79 -133.31 REMARK 500 ALA A 526 29.30 48.13 REMARK 500 ASN A 550 41.45 -82.14 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6VKM A 1 472 UNP A0A2I4PEY8_9MONO DBREF2 6VKM A A0A2I4PEY8 1 313 DBREF1 6VKM A 473 647 UNP A0A0E3XL33_9MONO DBREF2 6VKM A A0A0E3XL33 473 647 SEQADV 6VKM ALA A 42 UNP A0A2I4PEY THR 42 ENGINEERED MUTATION SEQADV 6VKM PRO A 577 UNP A0A0E3XL3 THR 577 ENGINEERED MUTATION SEQADV 6VKM PHE A 588 UNP A0A0E3XL3 LYS 588 ENGINEERED MUTATION SEQADV 6VKM HIS A 648 UNP A0A0E3XL3 EXPRESSION TAG SEQADV 6VKM HIS A 649 UNP A0A0E3XL3 EXPRESSION TAG SEQADV 6VKM HIS A 650 UNP A0A0E3XL3 EXPRESSION TAG SEQADV 6VKM HIS A 651 UNP A0A0E3XL3 EXPRESSION TAG SEQADV 6VKM HIS A 652 UNP A0A0E3XL3 EXPRESSION TAG SEQADV 6VKM HIS A 653 UNP A0A0E3XL3 EXPRESSION TAG SEQRES 1 A 494 MET GLY VAL THR GLY ILE LEU GLN LEU PRO ARG ASP ARG SEQRES 2 A 494 PHE LYS ARG THR SER PHE PHE LEU TRP VAL ILE ILE LEU SEQRES 3 A 494 PHE GLN ARG THR PHE SER ILE PRO LEU GLY VAL ILE HIS SEQRES 4 A 494 ASN SER ALA LEU GLN VAL SER ASP VAL ASP LYS LEU VAL SEQRES 5 A 494 CYS ARG ASP LYS LEU SER SER THR ASN GLN LEU ARG SER SEQRES 6 A 494 VAL GLY LEU ASN LEU GLU GLY ASN GLY VAL ALA THR ASP SEQRES 7 A 494 VAL PRO SER VAL THR LYS ARG TRP GLY PHE ARG SER GLY SEQRES 8 A 494 VAL PRO PRO LYS VAL VAL ASN TYR GLU ALA GLY GLU TRP SEQRES 9 A 494 ALA GLU ASN CYS TYR ASN LEU GLU ILE LYS LYS PRO ASP SEQRES 10 A 494 GLY SER GLU CYS LEU PRO ALA ALA PRO ASP GLY ILE ARG SEQRES 11 A 494 GLY PHE PRO ARG CYS ARG TYR VAL HIS LYS VAL SER GLY SEQRES 12 A 494 THR GLY PRO CYS ALA GLY ASP PHE ALA PHE HIS LYS GLU SEQRES 13 A 494 GLY ALA PHE PHE LEU TYR ASP ARG LEU ALA SER THR VAL SEQRES 14 A 494 ILE TYR ARG GLY THR THR PHE ALA GLU GLY VAL VAL ALA SEQRES 15 A 494 PHE LEU ILE LEU PRO GLN ALA LYS LYS ASP PHE PHE SER SEQRES 16 A 494 SER HIS PRO LEU ARG GLU PRO VAL ASN ALA THR GLU ASP SEQRES 17 A 494 PRO SER SER GLY TYR TYR SER THR THR ILE ARG TYR GLN SEQRES 18 A 494 ALA THR GLY PHE GLY THR ASN GLU THR GLU TYR LEU PHE SEQRES 19 A 494 GLU VAL ASP ASN LEU THR TYR VAL GLN LEU GLU SER ARG SEQRES 20 A 494 PHE THR PRO GLN PHE LEU LEU GLN LEU ASN GLU THR ILE SEQRES 21 A 494 TYR ALA SER GLY LYS ARG SER ASN THR THR GLY LYS LEU SEQRES 22 A 494 ILE TRP LYS VAL ASN PRO GLU ILE ASP THR THR ILE GLY SEQRES 23 A 494 GLU TRP ALA PHE TRP GLU THR LYS LYS ASN LEU THR ARG SEQRES 24 A 494 LYS ILE ARG SER GLU GLU LEU SER PHE THR ALA VAL SER SEQRES 25 A 494 ASN SER ALA SER SER GLY LYS LEU GLY LEU ILE THR ASN SEQRES 26 A 494 THR ILE ALA GLY VAL ALA GLY LEU ILE THR GLY GLY ARG SEQRES 27 A 494 ARG THR ARG ARG GLU VAL ILE VAL ASN ALA GLN PRO LYS SEQRES 28 A 494 CYS ASN PRO ASN LEU HIS TYR TRP THR THR GLN ASP GLU SEQRES 29 A 494 GLY ALA ALA ILE GLY LEU ALA TRP ILE PRO TYR PHE GLY SEQRES 30 A 494 PRO ALA ALA GLU GLY ILE TYR THR GLU GLY LEU MET HIS SEQRES 31 A 494 ASN GLN ASP GLY LEU ILE CYS GLY LEU ARG GLN LEU ALA SEQRES 32 A 494 ASN GLU THR THR GLN ALA LEU GLN LEU PHE LEU ARG ALA SEQRES 33 A 494 THR PRO GLU LEU ARG THR PHE SER ILE LEU ASN ARG PHE SEQRES 34 A 494 ALA ILE ASP PHE LEU LEU GLN ARG TRP GLY GLY THR CYS SEQRES 35 A 494 HIS ILE LEU GLY PRO ASP CYS CYS ILE GLU PRO HIS ASP SEQRES 36 A 494 TRP THR LYS ASN ILE THR ASP LYS ILE ASP GLN ILE ILE SEQRES 37 A 494 HIS ASP PHE VAL ASP LYS THR LEU PRO ASP GLN GLY ASP SEQRES 38 A 494 ASN ASP ASN TRP TRP THR GLY HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG A 800 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) HELIX 1 AA1 SER A 59 ASN A 61 5 3 HELIX 2 AA2 GLU A 71 GLY A 74 5 4 HELIX 3 AA3 ASP A 78 THR A 83 1 6 HELIX 4 AA4 THR A 249 SER A 263 1 15 HELIX 5 AA5 ASN A 550 ASP A 552 5 3 HELIX 6 AA6 GLY A 553 THR A 576 1 24 HELIX 7 AA7 SER A 583 GLY A 598 1 16 HELIX 8 AA8 PRO A 612 THR A 620 1 9 SHEET 1 AA1 2 GLY A 36 HIS A 39 0 SHEET 2 AA1 2 ALA A 42 VAL A 45 -1 O ALA A 42 N HIS A 39 SHEET 1 AA2 6 LEU A 63 ASN A 69 0 SHEET 2 AA2 6 ALA A 177 ILE A 185 -1 O ALA A 182 N VAL A 66 SHEET 3 AA2 6 PHE A 159 LEU A 161 -1 N LEU A 161 O ALA A 177 SHEET 4 AA2 6 LEU A 165 SER A 167 -1 O SER A 167 N PHE A 160 SHEET 5 AA2 6 VAL A 96 ASN A 98 -1 N VAL A 97 O ALA A 166 SHEET 6 AA2 6 ARG A 580 THR A 581 1 O THR A 581 N VAL A 96 SHEET 1 AA3 2 TRP A 86 ARG A 89 0 SHEET 2 AA3 2 PHE A 151 HIS A 154 -1 O PHE A 151 N ARG A 89 SHEET 1 AA4 3 GLY A 102 GLU A 103 0 SHEET 2 AA4 3 LEU A 515 THR A 520 -1 O TRP A 518 N GLY A 102 SHEET 3 AA4 3 TYR A 543 MET A 548 -1 O THR A 544 N THR A 519 SHEET 1 AA5 6 ALA A 105 LYS A 114 0 SHEET 2 AA5 6 CYS A 135 THR A 144 1 O HIS A 139 N CYS A 108 SHEET 3 AA5 6 THR A 216 THR A 223 1 O ILE A 218 N VAL A 138 SHEET 4 AA5 6 GLU A 231 GLU A 235 -1 O GLU A 235 N ARG A 219 SHEET 5 AA5 6 THR A 240 GLN A 243 -1 O VAL A 242 N PHE A 234 SHEET 6 AA5 6 LEU A 273 TRP A 275 1 O TRP A 275 N TYR A 241 SSBOND 1 CYS A 53 CYS A 609 1555 1555 2.35 SSBOND 2 CYS A 108 CYS A 135 1555 1555 2.03 SSBOND 3 CYS A 121 CYS A 147 1555 1555 2.03 SSBOND 4 CYS A 511 CYS A 556 1555 1555 2.04 SSBOND 5 CYS A 601 CYS A 608 1555 1555 2.02 LINK ND2 ASN A 257 C1 NAG A 800 1555 1555 1.44 LINK ND2 ASN A 563 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CRYST1 113.110 113.110 393.180 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008841 0.005104 0.000000 0.00000 SCALE2 0.000000 0.010209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002543 0.00000