HEADER TRANSLATION 04-FEB-20 6VPR TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF DENR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DENSITY-REGULATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DRP,PROTEIN DRP1,SMOOTH MUSCLE CELL-ASSOCIATED PROTEIN 3, COMPND 5 SMAP-3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DENR, DRP1, H14; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN SYNTHESIS REGULATION; TRANSLATION INITIATION; TRANSLATION KEYWDS 2 REINITIATION; TRANSLATION RECYCLING; DENSITY REGULATED PROTEIN KEYWDS 3 (DENR), TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR I.B.LOMAKIN,T.A.STEITZ REVDAT 2 22-APR-20 6VPR 1 JRNL REVDAT 1 08-APR-20 6VPR 0 JRNL AUTH I.B.LOMAKIN,S.DE,J.WANG,A.N.BORKAR,T.A.STEITZ JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF DENR. JRNL REF COMPUT STRUCT BIOTECHNOL J V. 18 696 2020 JRNL REFN ISSN 2001-0370 JRNL PMID 32257053 JRNL DOI 10.1016/J.CSBJ.2020.03.009 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1100.9800 - 4.9000 1.00 2505 138 0.1798 0.2407 REMARK 3 2 4.9000 - 3.8900 1.00 2501 133 0.1834 0.2591 REMARK 3 3 3.8900 - 3.4000 1.00 2518 124 0.2153 0.2754 REMARK 3 4 3.4000 - 3.0900 1.00 2490 138 0.2412 0.3051 REMARK 3 5 3.0800 - 2.8600 1.00 2512 136 0.2701 0.3296 REMARK 3 6 2.8600 - 2.7000 1.00 2471 148 0.2858 0.3094 REMARK 3 7 2.6900 - 2.5600 1.00 2484 143 0.3387 0.4216 REMARK 3 8 2.5600 - 2.4500 1.00 2487 138 0.3518 0.4053 REMARK 3 9 2.4500 - 2.3500 1.00 2502 115 0.3734 0.4133 REMARK 3 10 2.3500 - 2.2700 1.00 2494 146 0.3979 0.4762 REMARK 3 11 2.2700 - 2.2000 1.00 2491 142 0.4352 0.4631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28988 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.59 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.90 REMARK 200 R MERGE FOR SHELL (I) : 12.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K/NA TARTRATE, 2.5 M AMMONIUM REMARK 280 SULFATE, 0.1 M TRI-SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.07667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.15333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.07667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.15333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.07667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 50.15333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.07667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ASP A 12 REMARK 465 CYS A 13 REMARK 465 LYS A 14 REMARK 465 GLY A 15 REMARK 465 ASP A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 ASN A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 LYS A 22 REMARK 465 LEU A 23 REMARK 465 ASP A 24 REMARK 465 ALA A 25 REMARK 465 ASP A 26 REMARK 465 TYR A 27 REMARK 465 PRO A 28 REMARK 465 LEU A 29 REMARK 465 ARG A 30 REMARK 465 VAL A 31 REMARK 465 LEU A 32 REMARK 465 TYR A 33 REMARK 465 CYS A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 CYS A 37 REMARK 465 SER A 38 REMARK 465 LEU A 39 REMARK 465 PRO A 40 REMARK 465 THR A 41 REMARK 465 GLU A 42 REMARK 465 TYR A 43 REMARK 465 CYS A 44 REMARK 465 GLU A 45 REMARK 465 TYR A 46 REMARK 465 MET A 47 REMARK 465 PRO A 48 REMARK 465 ASP A 49 REMARK 465 VAL A 50 REMARK 465 ALA A 51 REMARK 465 LYS A 52 REMARK 465 CYS A 53 REMARK 465 ARG A 54 REMARK 465 GLN A 55 REMARK 465 TRP A 56 REMARK 465 LEU A 57 REMARK 465 GLU A 58 REMARK 465 LYS A 59 REMARK 465 ASN A 60 REMARK 465 PHE A 61 REMARK 465 PRO A 62 REMARK 465 ASN A 63 REMARK 465 GLU A 64 REMARK 465 PHE A 65 REMARK 465 ALA A 66 REMARK 465 LYS A 67 REMARK 465 LEU A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 GLU A 71 REMARK 465 ASN A 72 REMARK 465 SER A 73 REMARK 465 PRO A 74 REMARK 465 LYS A 75 REMARK 465 GLN A 76 REMARK 465 GLU A 77 REMARK 465 ALA A 78 REMARK 465 GLY A 79 REMARK 465 ILE A 80 REMARK 465 SER A 81 REMARK 465 GLU A 82 REMARK 465 GLY A 83 REMARK 465 GLN A 84 REMARK 465 GLY A 85 REMARK 465 THR A 86 REMARK 465 ALA A 87 REMARK 465 GLY A 88 REMARK 465 GLU A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 91 REMARK 465 GLU A 92 REMARK 465 LYS A 93 REMARK 465 LYS A 94 REMARK 465 LYS A 95 REMARK 465 GLN A 96 REMARK 465 LYS A 97 REMARK 465 ARG A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 ARG A 101 REMARK 465 GLY A 102 REMARK 465 GLN A 103 REMARK 465 ILE A 104 REMARK 465 LYS A 105 REMARK 465 GLN A 106 REMARK 465 LYS A 107 REMARK 465 LYS A 108 REMARK 465 LYS A 109 REMARK 465 THR A 110 REMARK 465 VAL A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 ASP B 12 REMARK 465 CYS B 13 REMARK 465 LYS B 14 REMARK 465 GLY B 15 REMARK 465 ASP B 16 REMARK 465 PRO B 17 REMARK 465 ARG B 18 REMARK 465 ASN B 19 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 LYS B 22 REMARK 465 LEU B 23 REMARK 465 ASP B 24 REMARK 465 ALA B 25 REMARK 465 ASP B 26 REMARK 465 TYR B 27 REMARK 465 PRO B 28 REMARK 465 LEU B 29 REMARK 465 ARG B 30 REMARK 465 VAL B 31 REMARK 465 LEU B 32 REMARK 465 TYR B 33 REMARK 465 CYS B 34 REMARK 465 GLY B 35 REMARK 465 VAL B 36 REMARK 465 CYS B 37 REMARK 465 SER B 38 REMARK 465 LEU B 39 REMARK 465 PRO B 40 REMARK 465 THR B 41 REMARK 465 GLU B 42 REMARK 465 TYR B 43 REMARK 465 CYS B 44 REMARK 465 GLU B 45 REMARK 465 TYR B 46 REMARK 465 MET B 47 REMARK 465 PRO B 48 REMARK 465 ASP B 49 REMARK 465 VAL B 50 REMARK 465 ALA B 51 REMARK 465 LYS B 52 REMARK 465 CYS B 53 REMARK 465 ARG B 54 REMARK 465 GLN B 55 REMARK 465 TRP B 56 REMARK 465 LEU B 57 REMARK 465 GLU B 58 REMARK 465 LYS B 59 REMARK 465 ASN B 60 REMARK 465 PHE B 61 REMARK 465 PRO B 62 REMARK 465 ASN B 63 REMARK 465 GLU B 64 REMARK 465 PHE B 65 REMARK 465 ALA B 66 REMARK 465 LYS B 67 REMARK 465 LEU B 68 REMARK 465 THR B 69 REMARK 465 VAL B 70 REMARK 465 GLU B 71 REMARK 465 ASN B 72 REMARK 465 SER B 73 REMARK 465 PRO B 74 REMARK 465 LYS B 75 REMARK 465 GLN B 76 REMARK 465 GLU B 77 REMARK 465 ALA B 78 REMARK 465 GLY B 79 REMARK 465 ILE B 80 REMARK 465 SER B 81 REMARK 465 GLU B 82 REMARK 465 GLY B 83 REMARK 465 GLN B 84 REMARK 465 GLY B 85 REMARK 465 THR B 86 REMARK 465 ALA B 87 REMARK 465 GLY B 88 REMARK 465 GLU B 89 REMARK 465 GLU B 90 REMARK 465 GLU B 91 REMARK 465 GLU B 92 REMARK 465 LYS B 93 REMARK 465 LYS B 94 REMARK 465 LYS B 95 REMARK 465 GLN B 96 REMARK 465 LYS B 97 REMARK 465 ARG B 98 REMARK 465 GLY B 99 REMARK 465 GLY B 100 REMARK 465 ARG B 101 REMARK 465 GLY B 102 REMARK 465 GLN B 103 REMARK 465 ILE B 104 REMARK 465 LYS B 105 REMARK 465 GLN B 106 REMARK 465 LYS B 107 REMARK 465 LYS B 108 REMARK 465 LYS B 109 REMARK 465 VAL B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 178 CA CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 126 O1 SO4 A 203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 124 C4 TLA A 201 4445 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 154 141.10 -174.80 REMARK 500 GLN A 167 43.02 -81.75 REMARK 500 ALA B 123 139.92 -172.12 REMARK 500 CYS B 154 143.34 -174.01 REMARK 500 ASP B 162 46.21 -142.50 REMARK 500 GLN B 167 38.30 -83.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 206 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 132 SG REMARK 620 2 GLU A 163 OE2 75.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 207 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 154 SG REMARK 620 2 TLA A 201 O11 114.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 307 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 132 SG REMARK 620 2 ACT B 306 OXT 94.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 308 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 154 SG REMARK 620 2 ACT B 305 OXT 86.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VPQ RELATED DB: PDB REMARK 900 DIFFERENT CRYSTAL FORM DBREF 6VPR A 1 198 UNP O43583 DENR_HUMAN 1 198 DBREF 6VPR B 1 198 UNP O43583 DENR_HUMAN 1 198 SEQRES 1 A 198 MET ALA ALA ASP ILE SER GLU SER SER GLY ALA ASP CYS SEQRES 2 A 198 LYS GLY ASP PRO ARG ASN SER ALA LYS LEU ASP ALA ASP SEQRES 3 A 198 TYR PRO LEU ARG VAL LEU TYR CYS GLY VAL CYS SER LEU SEQRES 4 A 198 PRO THR GLU TYR CYS GLU TYR MET PRO ASP VAL ALA LYS SEQRES 5 A 198 CYS ARG GLN TRP LEU GLU LYS ASN PHE PRO ASN GLU PHE SEQRES 6 A 198 ALA LYS LEU THR VAL GLU ASN SER PRO LYS GLN GLU ALA SEQRES 7 A 198 GLY ILE SER GLU GLY GLN GLY THR ALA GLY GLU GLU GLU SEQRES 8 A 198 GLU LYS LYS LYS GLN LYS ARG GLY GLY ARG GLY GLN ILE SEQRES 9 A 198 LYS GLN LYS LYS LYS THR VAL PRO GLN LYS VAL THR ILE SEQRES 10 A 198 ALA LYS ILE PRO ARG ALA LYS LYS LYS TYR VAL THR ARG SEQRES 11 A 198 VAL CYS GLY LEU ALA THR PHE GLU ILE ASP LEU LYS GLU SEQRES 12 A 198 ALA GLN ARG PHE PHE ALA GLN LYS PHE SER CYS GLY ALA SEQRES 13 A 198 SER VAL THR GLY GLU ASP GLU ILE ILE ILE GLN GLY ASP SEQRES 14 A 198 PHE THR ASP ASP ILE ILE ASP VAL ILE GLN GLU LYS TRP SEQRES 15 A 198 PRO GLU VAL ASP ASP ASP SER ILE GLU ASP LEU GLY GLU SEQRES 16 A 198 VAL LYS LYS SEQRES 1 B 198 MET ALA ALA ASP ILE SER GLU SER SER GLY ALA ASP CYS SEQRES 2 B 198 LYS GLY ASP PRO ARG ASN SER ALA LYS LEU ASP ALA ASP SEQRES 3 B 198 TYR PRO LEU ARG VAL LEU TYR CYS GLY VAL CYS SER LEU SEQRES 4 B 198 PRO THR GLU TYR CYS GLU TYR MET PRO ASP VAL ALA LYS SEQRES 5 B 198 CYS ARG GLN TRP LEU GLU LYS ASN PHE PRO ASN GLU PHE SEQRES 6 B 198 ALA LYS LEU THR VAL GLU ASN SER PRO LYS GLN GLU ALA SEQRES 7 B 198 GLY ILE SER GLU GLY GLN GLY THR ALA GLY GLU GLU GLU SEQRES 8 B 198 GLU LYS LYS LYS GLN LYS ARG GLY GLY ARG GLY GLN ILE SEQRES 9 B 198 LYS GLN LYS LYS LYS THR VAL PRO GLN LYS VAL THR ILE SEQRES 10 B 198 ALA LYS ILE PRO ARG ALA LYS LYS LYS TYR VAL THR ARG SEQRES 11 B 198 VAL CYS GLY LEU ALA THR PHE GLU ILE ASP LEU LYS GLU SEQRES 12 B 198 ALA GLN ARG PHE PHE ALA GLN LYS PHE SER CYS GLY ALA SEQRES 13 B 198 SER VAL THR GLY GLU ASP GLU ILE ILE ILE GLN GLY ASP SEQRES 14 B 198 PHE THR ASP ASP ILE ILE ASP VAL ILE GLN GLU LYS TRP SEQRES 15 B 198 PRO GLU VAL ASP ASP ASP SER ILE GLU ASP LEU GLY GLU SEQRES 16 B 198 VAL LYS LYS HET TLA A 201 10 HET TLA A 202 10 HET SO4 A 203 5 HET SO4 A 204 5 HET ACT A 205 4 HET HG A 206 1 HET HG A 207 1 HET TLA B 301 10 HET TLA B 302 10 HET PO4 B 303 5 HET SO4 B 304 5 HET ACT B 305 4 HET ACT B 306 4 HET HG B 307 1 HET HG B 308 1 HETNAM TLA L(+)-TARTARIC ACID HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM HG MERCURY (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 3 TLA 4(C4 H6 O6) FORMUL 5 SO4 3(O4 S 2-) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 8 HG 4(HG 2+) FORMUL 12 PO4 O4 P 3- FORMUL 18 HOH *14(H2 O) HELIX 1 AA1 LEU A 134 GLU A 138 5 5 HELIX 2 AA2 ASP A 140 SER A 153 1 14 HELIX 3 AA3 ASP A 173 TRP A 182 1 10 HELIX 4 AA4 ASP A 186 ILE A 190 5 5 HELIX 5 AA5 LEU B 134 GLU B 138 5 5 HELIX 6 AA6 ASP B 140 PHE B 152 1 13 HELIX 7 AA7 ASP B 173 TRP B 182 1 10 HELIX 8 AA8 ASP B 186 ILE B 190 5 5 SHEET 1 AA1 3 THR A 129 CYS A 132 0 SHEET 2 AA1 3 GLU A 163 ILE A 166 -1 O ILE A 166 N THR A 129 SHEET 3 AA1 3 ALA A 156 GLY A 160 -1 N SER A 157 O ILE A 165 SHEET 1 AA2 3 THR B 129 CYS B 132 0 SHEET 2 AA2 3 GLU B 163 ILE B 166 -1 O ILE B 164 N VAL B 131 SHEET 3 AA2 3 ALA B 156 GLY B 160 -1 N SER B 157 O ILE B 165 LINK SG CYS A 132 HG HG A 206 1555 1555 2.75 LINK SG CYS A 154 HG HG A 207 1555 1555 2.73 LINK OE2 GLU A 163 HG HG A 206 1555 1555 2.90 LINK SG CYS B 132 HG HG B 307 1555 1555 2.48 LINK SG CYS B 154 HG HG B 308 1555 1555 2.78 LINK O11 TLA A 201 HG HG A 207 1555 1555 3.19 LINK OXT ACT B 305 HG HG B 308 1555 1555 2.89 LINK OXT ACT B 306 HG HG B 307 1555 1555 2.62 LINK NZ LYS A 124 O4 TLA A 201 1555 4445 1.30 SITE 1 AC1 6 ARG A 122 LYS A 124 LYS A 126 GLN A 167 SITE 2 AC1 6 HG A 207 TLA B 301 SITE 1 AC2 4 LYS A 142 ARG A 146 GLY B 160 GLU B 161 SITE 1 AC3 4 LYS A 126 TYR A 127 GLY A 168 ASP A 169 SITE 1 AC4 2 GLU A 161 ARG B 122 SITE 1 AC5 1 HG A 207 SITE 1 AC6 2 CYS A 132 GLU A 163 SITE 1 AC7 4 CYS A 154 GLN A 167 TLA A 201 ACT A 205 SITE 1 AC8 6 GLN A 167 TLA A 201 ARG B 130 LEU B 193 SITE 2 AC8 6 GLU B 195 HOH B 401 SITE 1 AC9 5 ARG A 122 ALA A 123 LYS A 125 LYS B 125 SITE 2 AC9 5 TYR B 127 SITE 1 AD1 2 GLN B 145 ARG B 146 SITE 1 AD2 1 ASP B 169 SITE 1 AD3 3 GLY B 155 HG B 308 HOH B 407 SITE 1 AD4 2 HG B 307 HOH B 401 SITE 1 AD5 3 CYS B 132 GLU B 163 ACT B 306 SITE 1 AD6 3 CYS B 154 GLN B 167 ACT B 305 CRYST1 116.600 116.600 75.230 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008576 0.004952 0.000000 0.00000 SCALE2 0.000000 0.009903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013293 0.00000