HEADER TRANSFERASE 06-FEB-20 6VR3 TITLE AMINOGLYCOSIDE N-2'-ACETYLTRANSFERASE-IA [AAC(2')-IA] IN COMPLEX WITH TITLE 2 ACETYLATED-NETILMICIN AND COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE 2'-N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AAC(2')-IA; COMPND 5 EC: 2.3.1.59; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROVIDENCIA STUARTII; SOURCE 3 ORGANISM_TAXID: 588; SOURCE 4 GENE: AAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ACETYLTRANSFERASE, GNAT SUPERFAMILY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.V.BASSENDEN,A.M.BERGHUIS REVDAT 3 11-OCT-23 6VR3 1 REMARK REVDAT 2 14-JUL-21 6VR3 1 JRNL REVDAT 1 02-JUN-21 6VR3 0 JRNL AUTH A.V.BASSENDEN,L.DUMALO,J.PARK,J.BLANCHET,K.MAITI,D.P.ARYA, JRNL AUTH 2 A.M.BERGHUIS JRNL TITL STRUCTURAL AND PHYLOGENETIC ANALYSES OF RESISTANCE TO JRNL TITL 2 NEXT-GENERATION AMINOGLYCOSIDES CONFERRED BY AAC(2') JRNL TITL 3 ENZYMES. JRNL REF SCI REP V. 11 11614 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 34078922 JRNL DOI 10.1038/S41598-021-89446-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17_3644: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.420 REMARK 3 FREE R VALUE TEST SET COUNT : 3770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4900 - 5.9800 1.00 2039 140 0.1782 0.2511 REMARK 3 2 5.9800 - 4.7500 1.00 2050 145 0.1633 0.1667 REMARK 3 3 4.7500 - 4.1600 1.00 2031 140 0.1281 0.1590 REMARK 3 4 4.1500 - 3.7800 1.00 2027 141 0.1347 0.1832 REMARK 3 5 3.7800 - 3.5100 1.00 1991 146 0.1441 0.1838 REMARK 3 6 3.5100 - 3.3000 1.00 2056 138 0.1543 0.1902 REMARK 3 7 3.3000 - 3.1400 1.00 2052 142 0.1606 0.1799 REMARK 3 8 3.1400 - 3.0000 1.00 2038 138 0.1693 0.1918 REMARK 3 9 3.0000 - 2.8800 1.00 2010 140 0.1712 0.2164 REMARK 3 10 2.8800 - 2.7800 1.00 2034 124 0.1803 0.2477 REMARK 3 11 2.7800 - 2.7000 1.00 2045 140 0.1952 0.2926 REMARK 3 12 2.7000 - 2.6200 1.00 2064 138 0.1963 0.2585 REMARK 3 13 2.6200 - 2.5500 1.00 2007 138 0.1898 0.2554 REMARK 3 14 2.5500 - 2.4900 1.00 2063 138 0.1992 0.2494 REMARK 3 15 2.4900 - 2.4300 1.00 1971 142 0.2084 0.2902 REMARK 3 16 2.4300 - 2.3800 1.00 2069 142 0.1863 0.2669 REMARK 3 17 2.3800 - 2.3300 1.00 2032 141 0.1983 0.2363 REMARK 3 18 2.3300 - 2.2900 1.00 2013 130 0.2052 0.2468 REMARK 3 19 2.2900 - 2.2500 1.00 2075 146 0.2164 0.3095 REMARK 3 20 2.2500 - 2.2100 1.00 1998 138 0.2238 0.2627 REMARK 3 21 2.2100 - 2.1700 1.00 2026 138 0.2234 0.2948 REMARK 3 22 2.1700 - 2.1400 1.00 2016 144 0.2376 0.2615 REMARK 3 23 2.1400 - 2.1100 1.00 2089 144 0.2445 0.3001 REMARK 3 24 2.1100 - 2.0800 1.00 2006 135 0.2634 0.3053 REMARK 3 25 2.0800 - 2.0500 1.00 2047 146 0.2727 0.3145 REMARK 3 26 2.0500 - 2.0300 0.99 2005 128 0.2986 0.3429 REMARK 3 27 2.0300 - 2.0000 1.00 2061 148 0.3166 0.3519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3050 REMARK 3 ANGLE : 0.866 4147 REMARK 3 CHIRALITY : 0.052 441 REMARK 3 PLANARITY : 0.004 515 REMARK 3 DIHEDRAL : 31.338 1061 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 59.3731 30.4961 164.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.1465 REMARK 3 T33: 0.1243 T12: -0.0088 REMARK 3 T13: 0.0004 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.7161 L22: 2.0935 REMARK 3 L33: 0.7549 L12: -0.1581 REMARK 3 L13: -0.0638 L23: -0.0451 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.0345 S13: 0.0640 REMARK 3 S21: 0.1214 S22: -0.0686 S23: -0.0629 REMARK 3 S31: -0.0133 S32: -0.0495 S33: -0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6VR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1000246881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58685 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 26.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6VR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NASCN, MPD, ACETYL COA, NETILMICIN, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.51667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.51667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 117 REMARK 465 ASP B 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 117 OD1 OD2 REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 LYS A 121 CD CE NZ REMARK 470 LYS A 132 CE NZ REMARK 470 LYS A 139 CE NZ REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 LYS B 54 CD CE NZ REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 139 CD CE NZ REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 470 LYS B 157 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 63 O HOH A 301 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C2A COA A 202 N3A COA A 202 5677 1.13 REMARK 500 N3A COA A 202 N3A COA A 202 5677 1.61 REMARK 500 C2A COA A 202 C2A COA A 202 5677 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 -116.87 60.44 REMARK 500 ASP A 69 -116.87 47.10 REMARK 500 CYS A 107 -33.62 -130.85 REMARK 500 SER A 116 -154.49 -127.94 REMARK 500 GLU A 161 76.12 -104.29 REMARK 500 GLN B 52 -111.53 56.88 REMARK 500 ASP B 69 -107.99 65.26 REMARK 500 SER B 146 59.42 -92.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NTL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NTL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VOU RELATED DB: PDB REMARK 900 6VOU CONTAINS THE SAME PROTEIN COMPLEXED WITH COA AND ACETYLATED- REMARK 900 PLAZOMICIN REMARK 900 RELATED ID: 6VR2 RELATED DB: PDB REMARK 900 6VR2 CONTAINS THE SAME PROTEIN COMPLEXED WITH COA AND ACETYLATED- REMARK 900 TOBRAMYCIN DBREF 6VR3 A 1 178 UNP Q52424 AAC2_PROST 1 178 DBREF 6VR3 B 1 178 UNP Q52424 AAC2_PROST 1 178 SEQADV 6VR3 HIS A 0 UNP Q52424 EXPRESSION TAG SEQADV 6VR3 HIS B 0 UNP Q52424 EXPRESSION TAG SEQRES 1 A 179 HIS MET GLY ILE GLU TYR ARG SER LEU HIS THR SER GLN SEQRES 2 A 179 LEU THR LEU SER GLU LYS GLU ALA LEU TYR ASP LEU LEU SEQRES 3 A 179 ILE GLU GLY PHE GLU GLY ASP PHE SER HIS ASP ASP PHE SEQRES 4 A 179 ALA HIS THR LEU GLY GLY MET HIS VAL MET ALA PHE ASP SEQRES 5 A 179 GLN GLN LYS LEU VAL GLY HIS VAL ALA ILE ILE GLN ARG SEQRES 6 A 179 HIS MET ALA LEU ASP ASN THR PRO ILE SER VAL GLY TYR SEQRES 7 A 179 VAL GLU ALA MET VAL VAL GLU GLN SER TYR ARG ARG GLN SEQRES 8 A 179 GLY ILE GLY ARG GLN LEU MET LEU GLN THR ASN LYS ILE SEQRES 9 A 179 ILE ALA SER CYS TYR GLN LEU GLY LEU LEU SER ALA SER SEQRES 10 A 179 ASP ASP GLY GLN LYS LEU TYR HIS SER VAL GLY TRP GLN SEQRES 11 A 179 ILE TRP LYS GLY LYS LEU PHE GLU LEU LYS GLN GLY SER SEQRES 12 A 179 TYR ILE ARG SER ILE GLU GLU GLU GLY GLY VAL MET GLY SEQRES 13 A 179 TRP LYS ALA ASP GLY GLU VAL ASP PHE THR ALA SER LEU SEQRES 14 A 179 TYR CYS ASP PHE ARG GLY GLY ASP GLN TRP SEQRES 1 B 179 HIS MET GLY ILE GLU TYR ARG SER LEU HIS THR SER GLN SEQRES 2 B 179 LEU THR LEU SER GLU LYS GLU ALA LEU TYR ASP LEU LEU SEQRES 3 B 179 ILE GLU GLY PHE GLU GLY ASP PHE SER HIS ASP ASP PHE SEQRES 4 B 179 ALA HIS THR LEU GLY GLY MET HIS VAL MET ALA PHE ASP SEQRES 5 B 179 GLN GLN LYS LEU VAL GLY HIS VAL ALA ILE ILE GLN ARG SEQRES 6 B 179 HIS MET ALA LEU ASP ASN THR PRO ILE SER VAL GLY TYR SEQRES 7 B 179 VAL GLU ALA MET VAL VAL GLU GLN SER TYR ARG ARG GLN SEQRES 8 B 179 GLY ILE GLY ARG GLN LEU MET LEU GLN THR ASN LYS ILE SEQRES 9 B 179 ILE ALA SER CYS TYR GLN LEU GLY LEU LEU SER ALA SER SEQRES 10 B 179 ASP ASP GLY GLN LYS LEU TYR HIS SER VAL GLY TRP GLN SEQRES 11 B 179 ILE TRP LYS GLY LYS LEU PHE GLU LEU LYS GLN GLY SER SEQRES 12 B 179 TYR ILE ARG SER ILE GLU GLU GLU GLY GLY VAL MET GLY SEQRES 13 B 179 TRP LYS ALA ASP GLY GLU VAL ASP PHE THR ALA SER LEU SEQRES 14 B 179 TYR CYS ASP PHE ARG GLY GLY ASP GLN TRP HET NTL A 201 36 HET COA A 202 48 HET NTL B 201 36 HET COA B 202 48 HETNAM NTL N-[(2S,3R)-2-{[(1R,2S,3S,4R,6S)-6-AMINO-3-{[3-DEOXY-4- HETNAM 2 NTL C-METHYL-3-(METHYLAMINO)-BETA-L-LYXOPYRANOSYL]OXY}-4- HETNAM 3 NTL (ETHYLAMINO) -2-HYDROXYCYCLOHEXYL]OXY}-6- HETNAM 4 NTL (AMINOMETHYL)-3,4-DIHYDRO-2H-PYRAN-3-YL]ACETAMIDE HETNAM COA COENZYME A HETSYN NTL ACETYLATED-NETILMICIN FORMUL 3 NTL 2(C23 H43 N5 O8) FORMUL 4 COA 2(C21 H36 N7 O16 P3 S) FORMUL 7 HOH *170(H2 O) HELIX 1 AA1 SER A 11 LEU A 13 5 3 HELIX 2 AA2 THR A 14 PHE A 29 1 16 HELIX 3 AA3 SER A 34 THR A 41 1 8 HELIX 4 AA4 GLN A 85 ARG A 88 5 4 HELIX 5 AA5 GLY A 91 TYR A 108 1 18 HELIX 6 AA6 GLY A 119 SER A 125 1 7 HELIX 7 AA7 ILE A 147 GLU A 150 5 4 HELIX 8 AA8 SER B 11 LEU B 13 5 3 HELIX 9 AA9 THR B 14 GLU B 30 1 17 HELIX 10 AB1 SER B 34 LEU B 42 1 9 HELIX 11 AB2 GLN B 85 ARG B 88 5 4 HELIX 12 AB3 GLY B 91 TYR B 108 1 18 HELIX 13 AB4 GLY B 119 VAL B 126 1 8 SHEET 1 AA1 7 GLU A 4 HIS A 9 0 SHEET 2 AA1 7 MET A 45 ASP A 51 -1 O MET A 48 N ARG A 6 SHEET 3 AA1 7 LYS A 54 LEU A 68 -1 O VAL A 59 N VAL A 47 SHEET 4 AA1 7 THR A 71 VAL A 83 -1 O THR A 71 N LEU A 68 SHEET 5 AA1 7 LEU A 110 SER A 114 1 O LEU A 110 N GLY A 76 SHEET 6 AA1 7 VAL A 153 TRP A 156 -1 O TRP A 156 N GLY A 111 SHEET 7 AA1 7 GLN A 129 ILE A 130 -1 N GLN A 129 O GLY A 155 SHEET 1 AA2 6 GLU A 4 HIS A 9 0 SHEET 2 AA2 6 MET A 45 ASP A 51 -1 O MET A 48 N ARG A 6 SHEET 3 AA2 6 LYS A 54 LEU A 68 -1 O VAL A 59 N VAL A 47 SHEET 4 AA2 6 LEU A 168 TYR A 169 -1 O TYR A 169 N ALA A 67 SHEET 5 AA2 6 LEU A 135 LYS A 139 1 N PHE A 136 O LEU A 168 SHEET 6 AA2 6 SER A 142 ARG A 145 -1 O SER A 142 N LYS A 139 SHEET 1 AA3 7 GLU B 4 HIS B 9 0 SHEET 2 AA3 7 MET B 45 ASP B 51 -1 O HIS B 46 N LEU B 8 SHEET 3 AA3 7 LYS B 54 LEU B 68 -1 O VAL B 59 N VAL B 47 SHEET 4 AA3 7 THR B 71 VAL B 83 -1 O TYR B 77 N ILE B 62 SHEET 5 AA3 7 LEU B 110 SER B 114 1 O LEU B 110 N GLY B 76 SHEET 6 AA3 7 VAL B 153 TRP B 156 -1 O TRP B 156 N GLY B 111 SHEET 7 AA3 7 GLN B 129 ILE B 130 -1 N GLN B 129 O GLY B 155 SHEET 1 AA4 6 GLU B 4 HIS B 9 0 SHEET 2 AA4 6 MET B 45 ASP B 51 -1 O HIS B 46 N LEU B 8 SHEET 3 AA4 6 LYS B 54 LEU B 68 -1 O VAL B 59 N VAL B 47 SHEET 4 AA4 6 LEU B 168 TYR B 169 -1 O TYR B 169 N ALA B 67 SHEET 5 AA4 6 LEU B 135 LYS B 139 1 N PHE B 136 O LEU B 168 SHEET 6 AA4 6 SER B 142 ARG B 145 -1 O SER B 142 N LYS B 139 SITE 1 AC1 19 PHE A 29 ASP A 32 ASP A 37 GLU A 79 SITE 2 AC1 19 ALA A 80 MET A 81 SER A 114 ALA A 115 SITE 3 AC1 19 SER A 116 TYR A 123 GLU A 148 GLU A 149 SITE 4 AC1 19 ASP A 176 TRP A 178 COA A 202 HOH A 311 SITE 5 AC1 19 HOH A 313 HOH A 326 HOH A 351 SITE 1 AC2 21 GLY A 28 PHE A 29 MET A 81 VAL A 82 SITE 2 AC2 21 VAL A 83 ARG A 88 ARG A 89 GLN A 90 SITE 3 AC2 21 GLY A 91 GLY A 93 ARG A 94 SER A 116 SITE 4 AC2 21 LYS A 121 LEU A 122 TYR A 123 NTL A 201 SITE 5 AC2 21 HOH A 306 HOH A 317 HOH A 318 HOH A 348 SITE 6 AC2 21 HOH A 350 SITE 1 AC3 18 PHE B 29 ASP B 32 ASP B 37 GLU B 79 SITE 2 AC3 18 ALA B 80 MET B 81 SER B 114 ALA B 115 SITE 3 AC3 18 SER B 116 TYR B 123 GLU B 148 GLU B 149 SITE 4 AC3 18 TRP B 178 COA B 202 HOH B 304 HOH B 307 SITE 5 AC3 18 HOH B 310 HOH B 335 SITE 1 AC4 18 GLY B 28 PHE B 29 MET B 81 VAL B 82 SITE 2 AC4 18 VAL B 83 ARG B 88 ARG B 89 GLN B 90 SITE 3 AC4 18 GLY B 91 GLY B 93 ARG B 94 SER B 116 SITE 4 AC4 18 LEU B 122 TYR B 123 NTL B 201 HOH B 303 SITE 5 AC4 18 HOH B 312 HOH B 358 CRYST1 73.038 73.038 145.550 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013692 0.007905 0.000000 0.00000 SCALE2 0.000000 0.015810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006870 0.00000